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Articles 1231 - 1260 of 2419

Full-Text Articles in Physical Sciences and Mathematics

High-Powered Led Assembly As Replacement For Conventional Hbo Lamps In High Resolution, High Magnification Microscopy System, Christian Y. Miranda Solis May 2019

High-Powered Led Assembly As Replacement For Conventional Hbo Lamps In High Resolution, High Magnification Microscopy System, Christian Y. Miranda Solis

Theses and Dissertations

Through decades, fluorescence microscopy has relied on mercury vapor lamps as its main light source due to their high power, broad spectrum, and bright bands generated. The use of mercury vapor lamps has remained fundamentally associated with the required lighting equipment of research laboratories. However, as time progresses, mercury vapor lamps have been slowly replaced with technologies that offered longer lifetimes, less hazardous waste, and output light at similar intensities. LED technology has been actively used in biological research, but was limited by price, lower intensities, and stability. The recent development of LED technology has allowed for further understanding and …


Studies On Regulation Of Dihydrotestosterone Binding To And Releasing From The Androgen Receptor, Tahyra M. Resto Santos May 2019

Studies On Regulation Of Dihydrotestosterone Binding To And Releasing From The Androgen Receptor, Tahyra M. Resto Santos

Theses and Dissertations

The androgen receptor (AR) is a nuclear receptor that responds to testosterone and 5α-dihydrotestosterone (DHT) by modulating gene expression in a variety of cells, including prostate and muscle tissues. Studies of small molecule interaction with AR have shown diphenyl compounds inhibiting through a binding site labeled Binding Function 3 (BF3). The goal of this research is to analyze the interaction of the BF3 site with DDT and related compounds. Amino acids that are exposed on the surface of the BF3 that might interact with different compounds were mutated. Mutant proteins were tested experimentally for their impact on the inhibition the …


The Development Of Screening Platforms To Identify Novel Anti-Infectives That Inhibit Protein Synthesis In Pseudomonas Aeruginosa, Casey Anne Hughes May 2019

The Development Of Screening Platforms To Identify Novel Anti-Infectives That Inhibit Protein Synthesis In Pseudomonas Aeruginosa, Casey Anne Hughes

Theses and Dissertations

Pseudomonas aeruginosa, a Gram-negative opportunistic pathogen, is a leading cause of nosocomial infections and is becoming increasingly antibiotic resistant. Aminoacyl-tRNA synthetases (aaRSs) catalyze the covalent attachment of amino acids to their cognate tRNAs and serve as validated targets for the development of new anti-infectives. In P. aeruginosa, the genome contains two genes (tyrS and tyrZ) which encode two distinct TyrRS enzymes. The genes encoding both P. aeruginosa TyrRS-Z and TyrRS-S were cloned, overexpressed in E. coli cells, and purified to homogeneity. Both forms of TyrRS were active in aminoacylation and were developed into screening platforms using scintillation proximity …


Comparative, Lithology-Based Biogeography Of Phreatophytic And Non-Phreatophytic Matrices Along A North-South Gradient Of The South Texas Sand Sheet, Christopher Joaquin Munoz May 2019

Comparative, Lithology-Based Biogeography Of Phreatophytic And Non-Phreatophytic Matrices Along A North-South Gradient Of The South Texas Sand Sheet, Christopher Joaquin Munoz

Theses and Dissertations

A 70km-long, N-S stratigraphic cross-section spanning the entirety of the South Texas Sand Sheet (STSS) has been rendered along Texas Interstate 69C. The cross-section indicates localized zones of substantial STSS thickness (>4m) as well as zones where the underlying Goliad Formation is either exposed or just below the surface (<0.5m). Spatial patterns of both phreatophytic and non-phreatophytic vegetation assemblages were analyzed by means of remote sensing and in situ herbaceous species evaluations. Biogeographic patterns were comprised of three vegetation matrices: P. glandulosa-dominated, Q. virginiana-dominated and a matrix of herbaceous plants. The geographic distribution of vegetation assemblages corresponded to specific lithological parameters and features. Namely, Q. virginiana concentration exhibited a positive linear relationship with the lithological parameter of STSS thickness (P =2.122x10-11) (α = 0.05). P. glandulosa/V. farnesiana …


First Measurement Of The Hubble Constant From A Dark Standard Siren Using The Dark Energy Survey Galaxies And The Ligo/Virgo Binary–Black-Hole Merger Gw170814, M. Soares-Santos, A. Palmese, Teviet Creighton, Mario C. Diaz, Soma Mukherjee, Volker Quetschke, Malik Rakhmanov, Karla E. Ramirez, Satzhan Sitmukhambetov, Robert Stone, D. Tuyenbayev, Wenhui Wang, Adam Zadrozny May 2019

First Measurement Of The Hubble Constant From A Dark Standard Siren Using The Dark Energy Survey Galaxies And The Ligo/Virgo Binary–Black-Hole Merger Gw170814, M. Soares-Santos, A. Palmese, Teviet Creighton, Mario C. Diaz, Soma Mukherjee, Volker Quetschke, Malik Rakhmanov, Karla E. Ramirez, Satzhan Sitmukhambetov, Robert Stone, D. Tuyenbayev, Wenhui Wang, Adam Zadrozny

Physics and Astronomy Faculty Publications and Presentations

We present a multi-messenger measurement of the Hubble constant H0 using the binary–black-hole merger GW170814 as a standard siren, combined with a photometric redshift catalog from the Dark Energy Survey (DES). The luminosity distance is obtained from the gravitational wave signal detected by the Laser Interferometer Gravitational-Wave Observatory (LIGO)/Virgo Collaboration (LVC) on 2017 August 14, and the redshift information is provided by the DES Year 3 data. Black hole mergers such as GW170814 are expected to lack bright electromagnetic emission to uniquely identify their host galaxies and build an object-by-object Hubble diagram. However, they are suitable for a statistical measurement, …


Roles Of Oxygen Vacancies And Ph Induced Size Changes On Photo- And Radioluminescence Of Undoped And Eu3+-Doped La2zr2o7 Nanoparticles, Santosh K. Gupta, Maya Abdou, Jose P. Zuniga, Partha Sarathi Ghosh, Enrique Molina, Ben Xu, Mircea Chipara, Yuanbing Mao May 2019

Roles Of Oxygen Vacancies And Ph Induced Size Changes On Photo- And Radioluminescence Of Undoped And Eu3+-Doped La2zr2o7 Nanoparticles, Santosh K. Gupta, Maya Abdou, Jose P. Zuniga, Partha Sarathi Ghosh, Enrique Molina, Ben Xu, Mircea Chipara, Yuanbing Mao

Chemistry Faculty Publications and Presentations

Defect, doping and particle size play important roles on the optical performance of nanophosphors. In this study, undoped La2Zr2O7 NPs (LZO) displayed multicolor emission under UV irradiation due to the presence of ionized oxygen vacancies in the band gap. In addition, we explored the effect of particle size of La2Zr2O7:Eu3+ (LZOE) NPs on their structure, surface area, photoluminescence, radioluminescence, lifetime and quantum yield. There is progressive decrease in luminescence output and quantum yield as the coprecipitation pH is raised to prepare the single-source precursors for the molten salt synthesis of the NPs. Under X-ray irradiation, the LZOE …


Modelling Water Fluxes In Plants: From Tissues To Biosphere, Maurizio Mencuccini, Stefano Manzoni, Bradley O. Christoffersen May 2019

Modelling Water Fluxes In Plants: From Tissues To Biosphere, Maurizio Mencuccini, Stefano Manzoni, Bradley O. Christoffersen

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

Contents Summary 1207 I. Introduction 1207 II. A brief history of modelling plant water fluxes 1208 III. Main components of plant water transport models 1208 IV. Stand-scale water fluxes and coupling to climate and soil 1213 V. Water fluxes in terrestrial biosphere models and feedbacks to community dynamics 1215 VI. Outstanding challenges in modelling water fluxes in the soil-plant-atmosphere continuum 1217 Acknowledgements 1218 References 1218 SUMMARY: Models of plant water fluxes have evolved from studies focussed on understanding the detailed structure and functioning of specific components of the soil-plant-atmosphere (SPA) continuum to architectures often incorporated inside eco-hydrological and terrestrial biosphere …


Comment On Rojas-Bracho And Colleagues (2019): Unsubstantiated Claims Can Lead To Tragic Conservation Outcomes, Karl W. Flessa, Luis Calderon-Aguilera, Carlos E. Cintra-Buenrostro, David L. Dettman, Gregory P. Dietl, David H. Goodwin, David K. Jacobs, Michal Kowalewski, Steven M. Nelson, Kirsten Rowell, Bernard R. Schone, Jansen A. Smith, Francisco Zamora-Arroyo May 2019

Comment On Rojas-Bracho And Colleagues (2019): Unsubstantiated Claims Can Lead To Tragic Conservation Outcomes, Karl W. Flessa, Luis Calderon-Aguilera, Carlos E. Cintra-Buenrostro, David L. Dettman, Gregory P. Dietl, David H. Goodwin, David K. Jacobs, Michal Kowalewski, Steven M. Nelson, Kirsten Rowell, Bernard R. Schone, Jansen A. Smith, Francisco Zamora-Arroyo

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

The vaquita’s decline is a tragic story indeed. However, the lack of action to prevent the extinction of this species is not due to unsubstantiated claims and scientific uncertainty.


Tree-Ring Reconstructions Of Streamflow For The Tennessee Valley, Sallyrose Anderson, Ross Ogle, Glenn Tootle, Abdoul Oubeidillah Apr 2019

Tree-Ring Reconstructions Of Streamflow For The Tennessee Valley, Sallyrose Anderson, Ross Ogle, Glenn Tootle, Abdoul Oubeidillah

Civil Engineering Faculty Publications and Presentations

This study reports the preliminary results from a statistical screening of tree-ring width records from the International Tree-Ring Data Bank (ITRDB), to evaluate the strength of the hydrological signal, in dendrochronological records from the Tennessee Valley. We used United States Geological Survey (USGS) streamflow data from 11 gages, within the Tennessee Valley, and regional tree-ring chronologies, to analyze the dendroclimatic potential of the region, and create seasonal flow reconstructions. Prescreening methods included correlation, date, and temporal stability analysis of predictors to ensure practical and reliable reconstructions. Seasonal correlation analysis revealed that large numbers of regional tree-ring chronologies were significantly correlated …


Agricultural Intensification And Urbanization Negatively Impact Soil Nematode Richness And Abundance: A Meta-Analysis, Satyendra K. Pothula, Parwinder Grewal, Robert M. Auge, Arnold M. Saxton, Ernest C. Bernard Apr 2019

Agricultural Intensification And Urbanization Negatively Impact Soil Nematode Richness And Abundance: A Meta-Analysis, Satyendra K. Pothula, Parwinder Grewal, Robert M. Auge, Arnold M. Saxton, Ernest C. Bernard

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

Human activity has extensively transformed the land surface by agricultural intensification and urbanization. In soil, nematodes are the most abundant invertebrates. The effect of human interventions was assessed on overall richness, overall abundance, richness and abundance of nematodes of each trophic group and colonizer-persister (c-p) guild by comparing urban, agriculture and disturbed grassland (DGL) with natural grassland (NGL) and forest ecosystems. Meta-analyses were conducted to generate quantitative summaries from 111 published articles that met the inclusion criteria, 91 expressed data in grams and 20 expressed data in cm3. Results from data expressed per 100 g of soil indicated that overall …


Low-Latency Gravitational-Wave Alerts For Multimessenger Astronomy During The Second Advanced Ligo And Virgo Observing Run, B. P. Abbott, R. Abbott, T. D. Abbott, S. Abraham, F. Acernese, K. Ackley, C. Adams, R. X. Adhikari, V. B. Adya, C. Affeldt, M. Agathos, K. Agatsuma, N. Aggarwal, O. D. Aguiar, L. Aiello, A. Ain, P. Ajith, G. Allen, A. Allocca, M. A. Aloy, P. A. Altin, A. Amato, A. Ananyeva, S. B. Anderson, W. G. Anderson, S. V. Angelova, S. Antier, S. Appert, K. Arai, M. C. Araya Apr 2019

Low-Latency Gravitational-Wave Alerts For Multimessenger Astronomy During The Second Advanced Ligo And Virgo Observing Run, B. P. Abbott, R. Abbott, T. D. Abbott, S. Abraham, F. Acernese, K. Ackley, C. Adams, R. X. Adhikari, V. B. Adya, C. Affeldt, M. Agathos, K. Agatsuma, N. Aggarwal, O. D. Aguiar, L. Aiello, A. Ain, P. Ajith, G. Allen, A. Allocca, M. A. Aloy, P. A. Altin, A. Amato, A. Ananyeva, S. B. Anderson, W. G. Anderson, S. V. Angelova, S. Antier, S. Appert, K. Arai, M. C. Araya

Physics and Astronomy Faculty Publications and Presentations

Advanced LIGO's second observing run (O2), conducted from 2016 November 30 to 2017 August 25, combined with Advanced Virgo's first observations in 2017 August, witnessed the birth of gravitational-wave multimessenger astronomy. The first ever gravitational-wave detection from the coalescence of two neutron stars, GW170817, and its gamma-ray counterpart, GRB 170817A, led to an electromagnetic follow-up of the event at an unprecedented scale. Several teams from across the world searched for EM/neutrino counterparts to GW170817, paving the way for the discovery of optical, X-ray, and radio counterparts. In this article, we describe the online identification of gravitational-wave transients and the distribution …


Evaluating A New Algorithm For Satellite-Based Evapotranspiration For North American Ecosystems: Model Development And Validation, Bassil El Masri, Abdullah F. Rahman, Danilo Dragoni Apr 2019

Evaluating A New Algorithm For Satellite-Based Evapotranspiration For North American Ecosystems: Model Development And Validation, Bassil El Masri, Abdullah F. Rahman, Danilo Dragoni

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

Highlights

  • We developed an algorithm to estimate evapotranspiration based solely on satellite data.

  • Our model is able to track the seasonal changes in the flux tower observations.

  • The errors in the model ET output were lower than the MODIS ET product.

  • The modeled and observed ET strong relationship implies that our model has the potential to be applied to different ecosystems.

Abstract

We introduce a different operational approach to estimate 8-day average daily evapotranspiration (ET) using both routinely available data and the Penman-Monteith (P-M) equation for canopy transpiration and evaporation of intercepted water and Priestley and Taylor for soil evaporation. …


Vaquita Face Extinction From Bycatch. Comment On Manjarrez-Bringas, N. Et Al., Lessons For Sustainable Development: Marine Mammal Conservation Policies And Its Social And Economic Effects., Karl W. Flessa, Luis Calderon-Aguilera, Carlos E. Cintra-Buenrostro, David L. Dettman, Gregory P. Dietl, David H. Goodwin, David K. Jacobs, Michal Kowalewski, Steven M. Nelson, Kirsten Rowell, Bernard R. Schone, Jansen A. Smith, Francisco Zamora-Arroyo Apr 2019

Vaquita Face Extinction From Bycatch. Comment On Manjarrez-Bringas, N. Et Al., Lessons For Sustainable Development: Marine Mammal Conservation Policies And Its Social And Economic Effects., Karl W. Flessa, Luis Calderon-Aguilera, Carlos E. Cintra-Buenrostro, David L. Dettman, Gregory P. Dietl, David H. Goodwin, David K. Jacobs, Michal Kowalewski, Steven M. Nelson, Kirsten Rowell, Bernard R. Schone, Jansen A. Smith, Francisco Zamora-Arroyo

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

We are among the scientists who have documented the environmental and ecological changes to the Upper Gulf of California following the reduction in the Colorado River’s flow. We object to any suggestion that our research supports Manjarrez-Bringas et al.’s conclusion that the decline in the Colorado River’s flow is the reason for the decline in the population of the endangered vaquita porpoise (Phocoena sinus). Manjarrez-Bringas et al.’s conclusions are incongruent with their own data, their logic is untenable, their analyses fail to consider current illegal fishing practices, and their recommendations are unjustified and misdirected. Vaquita face extinction because of bycatch, …


Phytochemical Investigation Of Magnolia Grandiflora Green Seed Cones: Analytical And Phytoceutical Studies, Bo Garza, Alondra Echeverria, Felipe Gonzalez, Orlando Castillo, Thomas Eubanks, Debasish Bandyopadhyay Apr 2019

Phytochemical Investigation Of Magnolia Grandiflora Green Seed Cones: Analytical And Phytoceutical Studies, Bo Garza, Alondra Echeverria, Felipe Gonzalez, Orlando Castillo, Thomas Eubanks, Debasish Bandyopadhyay

Chemistry Faculty Publications and Presentations

Phytochemicals are inevitable part of human civilization. It is impossible to say exactly when menfolk started to take plant portions to cure various diseases. Phytochemical investigation of diethyl ether and ethanol extracts of Magnolia grandiflora green seed cones has been carried out. Extraction, isolation, and identification of the phytochemicals were carried out. Structures were determined by various analytical methods including extensive nuclear magnetic resonance, gas chromatography‐ mass spectroscopy, and X‐ray crystallographic analyses. Structures of the three compounds viz. 5,5′‐diallyl‐[1,1′‐biphenyl]‐2,2′‐diol (I), 3′,5‐diallyl‐[1,1′‐biphenyl]‐2,4′‐ diol (II), and (3S,3aS,8S,9aS,10aR,10bS,E)‐8‐hydroxy‐3,6,9a‐trimethyl‐3a,4,5,8,9,9a, 10a,10b‐octahydrooxireno[2′,3′:9,10]cyclodeca[1,2‐b]furan‐2(3H)‐one (III) were confirmed by X‐ray crystallographic analysis. GS‐MS studies of the isolated oil, eluted …


“Diabesity” Among Latinos: A Culturally Relevant Mathematics Activity By A Mathematics Teacher Candidate, Olga Ramirez, Cherie Mccollough Apr 2019

“Diabesity” Among Latinos: A Culturally Relevant Mathematics Activity By A Mathematics Teacher Candidate, Olga Ramirez, Cherie Mccollough

School of Mathematical and Statistical Sciences Faculty Publications and Presentations

This paper summarizes a culturally relevant mathematics project conducted by a mentored secondary-level Latino teacher candidate (TC) as a requirement for an undergraduate mathematics project course at a south Texas university. The culturally relevant math project involved four secondary Latino students and their parents. The topic was “diabesity”; that is, diabetes and obesity among Latinos southern region in the United States of America with an emphasis on body mass index, proper diet, and exercise. Remarks by the faculty mentor and a faculty consultant about the TC work and reflections regarding this project are also included and provide perspectives on how …


Pharmacological Aspects Of Resveratrol, Raisa Ramirez, Debasish Bandyopadhyay Mar 2019

Pharmacological Aspects Of Resveratrol, Raisa Ramirez, Debasish Bandyopadhyay

Chemistry Faculty Publications and Presentations

Resveratrol [(E)-5-(4-hydroxystyryl) benzene-1,3-diol], also known as 3,4′,5-trihydroxystilbene also known as resveratrol is classified as a phytoalexin in plants such as nuts, cocoa, berries and grapes for self-defense against injury and pathogenic attacks by bacteria and fungi. Research on this compound did not gain popularity until the 1990s when a published paper implied the relationship between resveratrol and the decrease in cardiovascular complications due to the consumption of grape fermented wine in French populations. This observation sparked research on resveratrol even though its concentration in wine is relatively low, leading to the realization that resveratrol has potential for benefits in other …


Cophosk: A Method For Comprehensive Kinase Substrate Annotation Using Co-Phosphorylation Analysis, Marzieh Ayati, Danica Wiredja, Daniela Schlatzer, Sean Maxwell, Ming Li, Mehmet Koyutürk, Mark R. Chance Feb 2019

Cophosk: A Method For Comprehensive Kinase Substrate Annotation Using Co-Phosphorylation Analysis, Marzieh Ayati, Danica Wiredja, Daniela Schlatzer, Sean Maxwell, Ming Li, Mehmet Koyutürk, Mark R. Chance

Computer Science Faculty Publications and Presentations

We present CoPhosK to predict kinase-substrate associations for phosphopeptide substrates detected by mass spectrometry (MS). The tool utilizes a Naïve Bayes framework with priors of known kinase-substrate associations (KSAs) to generate its predictions. Through the mining of MS data for the collective dynamic signatures of the kinases’ substrates revealed by correlation analysis of phosphopeptide intensity data, the tool infers KSAs in the data for the considerable body of substrates lacking such annotations. We benchmarked the tool against existing approaches for predicting KSAs that rely on static information (e.g. sequences, structures and interactions) using publically available MS data, including breast, colon, …


Randomized Parameterized Algorithms For The Kidney Exchange Problem, Mugang Lin, Jianxin Wang, Qilong Feng, Bin Fu Feb 2019

Randomized Parameterized Algorithms For The Kidney Exchange Problem, Mugang Lin, Jianxin Wang, Qilong Feng, Bin Fu

Computer Science Faculty Publications and Presentations

In order to increase the potential kidney transplants between patients and their incompatible donors, kidney exchange programs have been created in many countries. In the programs, designing algorithms for the kidney exchange problem plays a critical role. The graph theory model of the kidney exchange problem is to find a maximum weight packing of vertex-disjoint cycles and chains for a given weighted digraph. In general, the length of cycles is not more than a given constant L (typically 2 L 5), and the objective function corresponds to maximizing the number of possible kidney transplants. In this paper, we study the …


Li And Na Adsorption On Graphene And Graphene Oxide Examined By Density Functional Theory Quantum Theory Of Atoms In Molecules And Electron Localization Function, N. Dimakis, Isaiah Salas, Luis Gonzalez, Om Vadodaria, Korinna Ruiz, Muhammad I. Bhatti Feb 2019

Li And Na Adsorption On Graphene And Graphene Oxide Examined By Density Functional Theory Quantum Theory Of Atoms In Molecules And Electron Localization Function, N. Dimakis, Isaiah Salas, Luis Gonzalez, Om Vadodaria, Korinna Ruiz, Muhammad I. Bhatti

Physics and Astronomy Faculty Publications and Presentations

Adsorption of Li and Na on pristine and defective graphene and graphene oxide (GO) is studied using density functional theory (DFT) structural and electronic calculations, quantum theory of atoms in molecules (QTAIM), and electron localization function (ELF) analyses. DFT calculations show that Li and Na adsorptions on pristine graphene are not stable at all metal coverages examined here. However, the presence of defects on graphene support stabilizes both Li and Na adsorptions. Increased Li and Na coverages cause metal nucleation and weaken adsorption. Defective graphene is associated with the presence of band gaps and, thus, Li and Na adsorptions can …


Thermally Induced Disorder-Order Phase Transition Of Gd 2 Hf 2 O 7 :Eu 3+ Nanoparticles And Its Implication On Photo-And Radioluminescence, Santosh K. Gupta, Maya Abdou, Partha Sarathi Ghosh, Jose P. Zuniga, Yuanbing Mao Feb 2019

Thermally Induced Disorder-Order Phase Transition Of Gd 2 Hf 2 O 7 :Eu 3+ Nanoparticles And Its Implication On Photo-And Radioluminescence, Santosh K. Gupta, Maya Abdou, Partha Sarathi Ghosh, Jose P. Zuniga, Yuanbing Mao

Chemistry Faculty Publications and Presentations

Crystal structure has a strong influence on the luminescence properties of lanthanide-doped materials. In this work, we have investigated the thermally induced structural transition in Gd 2 Hf 2 O 7 (GHO) using Eu 3+ ions as the spectroscopic probe. It was found that complete phase transition from the disordered fluorite phase (DFP) to the ordered pyrochlore phase (OPP) can be achieved in GHO with the increase of annealing temperature from 650 ? 1100 ? 1300 °C. OPP is the more stable structural form for the GHOE nanoparticles (NPs) annealed at a higher temperature based on the energy calculation by …


A Concept Of Biopharmaceutical Nanosatellite, Jakub Mielczarek, Adam Zadrozny Feb 2019

A Concept Of Biopharmaceutical Nanosatellite, Jakub Mielczarek, Adam Zadrozny

Physics and Astronomy Faculty Publications and Presentations

The article is a short overview of a proposal of a CubeSat type nanosatellite designed to conduct biopharmaceutical tests on the low earth orbit. Motivations behind the emerging demand for such solution nowadays and in the close future are emphasized. The possible objectives and challenges to be addressed in the planned biopharmaceutical CubeSat missions are discussed. In particular, it is hard to imagine progress of the space tourism and colonization of Mars without a wide-ranging development of pharmaceutics dedicated to be used in space. Finally, an exemplary layout of a 3U type CubeSat is presented. We stress that, thanks to …


Molecular Cloning And Characterization Of Two Arnt (Arnt-1 And Arnt-2) Genes In Atlantic Croaker And Their Expression During Coexposure To Hypoxia And Pcb77, Md. Saydur Rahman, Peter Thomas Feb 2019

Molecular Cloning And Characterization Of Two Arnt (Arnt-1 And Arnt-2) Genes In Atlantic Croaker And Their Expression During Coexposure To Hypoxia And Pcb77, Md. Saydur Rahman, Peter Thomas

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

Aryl hydrocarbon receptor nuclear translocator (ARNT) is an important transcriptions factor that binds/coactivates drug-metabolizing genes in vertebrates. In this study, we report the cloning and characterization of two ARNT (ARNT-1 and ARNT-2) genes and their mRNA and protein expression in liver tissues of Atlantic croaker after co-exposure to hypoxia and 3,3',4,4'-tetrachlorobiphenyl (PCB77). The full-length croaker ARNT-1 and ARNT-2 genes encode proteins of 537 and 530 amino acids, respectively, and are highly homologous to ARNT-1 and ARNT-2 genes of other vertebrates. ARNT mRNAs are ubiquitously expressed in all tissues. Hypoxia (dissolved oxygen: 1.7 mg/L) exposure (1-4 weeks) did not affect hepatic …


Ocean Robots Uncover Microbial Secrets, Susan Evans, Jim Birch, John A. Breier, Michael V. Jakuba, Mak A. Saito, Julie Robidart Feb 2019

Ocean Robots Uncover Microbial Secrets, Susan Evans, Jim Birch, John A. Breier, Michael V. Jakuba, Mak A. Saito, Julie Robidart

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

Life on Earth began in the sea, and the oceans continue to support life on our planet. Of particular importance is the ability of marine microbes to exist in a complex web of relationships where substances are continually transformed and exchanged.


A Heuristic Classification Of Woody Plants Based On Contrasting Shade And Drought Strategies, Liang Wei, Chonggang Xu, Steven Jansen, Hang Zhou, Bradley O. Christoffersen, William T. Pockman, Richard S. Middleton, John D. Marshall, Nate G. Mcdowell Jan 2019

A Heuristic Classification Of Woody Plants Based On Contrasting Shade And Drought Strategies, Liang Wei, Chonggang Xu, Steven Jansen, Hang Zhou, Bradley O. Christoffersen, William T. Pockman, Richard S. Middleton, John D. Marshall, Nate G. Mcdowell

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

Woody plants vary in their adaptations to drought and shade. For a better prediction of vegetation responses to drought and shade within dynamic global vegetation models, it is critical to group species into functional types with similar adaptations. One of the key challenges is that the adaptations are generally determined by a large number of plant traits that may not be available for a large number of species. In this study, we present two heuristic woody plant groups that were separated using cluster analysis in a three-dimensional trait–environment space based on three key metrics for each species: mean xylem embolism …


The Generalized Weierstrass System In Three-Dimensional Euclidean Space, Paul Bracken Jan 2019

The Generalized Weierstrass System In Three-Dimensional Euclidean Space, Paul Bracken

School of Mathematical and Statistical Sciences Faculty Publications and Presentations

In this chapter, some recent advances in the area of generalized Weierstrass representations will be given. This is an approach to the theory of surfaces in Euclidean three space. Weierstrass representations permit the explicit construction of surfaces in the designated space. The discussion proceeds in a novel and introductory manner. The inducing formulas for the coordinates of a surface are derived and important conservation laws are formulated. These lead to the inducing mechanism of a surface in terms of solutions to a system of two-dimensional Dirac equations. A set of fundamental forms as well as expressions for the mean and …


A Fermi Gamma-Ray Burst Monitor Search For Electromagnetic Signals Coincident With Gravitational-Wave Candidates In Advanced Ligo's First Observing Run, E. Burns, A. Goldstein, C. M. Hui, L. Blackburn, M. S. Briggs, V. Connaughton, R. Hamburg, D. Kocevski, P. Veres, C. A. Wilson-Hodge, E. Bissaldi, W. H. Cleveland, M. M. Giles, B. Mailyan, C. A. Meegan, W. A. Paciesas, S. Poolakkil, R. D. Preece, J. L. Racusin, O. J. Roberts, A. Von Kienlin, B. P. Abbott, R. Abbott, T. D. Abbott, F. Acernese, K. Ackley, C. Adams, T. Adams, P. Addesso, R. X. Adhikari Jan 2019

A Fermi Gamma-Ray Burst Monitor Search For Electromagnetic Signals Coincident With Gravitational-Wave Candidates In Advanced Ligo's First Observing Run, E. Burns, A. Goldstein, C. M. Hui, L. Blackburn, M. S. Briggs, V. Connaughton, R. Hamburg, D. Kocevski, P. Veres, C. A. Wilson-Hodge, E. Bissaldi, W. H. Cleveland, M. M. Giles, B. Mailyan, C. A. Meegan, W. A. Paciesas, S. Poolakkil, R. D. Preece, J. L. Racusin, O. J. Roberts, A. Von Kienlin, B. P. Abbott, R. Abbott, T. D. Abbott, F. Acernese, K. Ackley, C. Adams, T. Adams, P. Addesso, R. X. Adhikari

Physics and Astronomy Faculty Publications and Presentations

We present a search for prompt gamma-ray counterparts to compact binary coalescence gravitational wave (GW) candidates from Advanced LIGO's first observing run (O1). As demonstrated by the multimessenger observations of GW170817/GRB 170817A, electromagnetic and GW observations provide complementary information about the astrophysical source, and in the case of weaker candidates, may strengthen the case for an astrophysical origin. Here we investigate low-significance GW candidates from the O1 compact binary coalescence searches using the Fermi Gamma-Ray Burst Monitor (GBM), leveraging its all sky and broad energy coverage. Candidates are ranked and compared to background to measure the significance. Those with false …


Effect Of Hot Water Treatment Of In-Shell Pecans On Physicochemical Properties And Consumer Acceptability Of Roasted Pecan Kernels, Karuna Kharel, Witoon Prinyawiwatkul, Veerachandra K. Yemmireddy, Charles J. Graham, Achyut Adhikari Jan 2019

Effect Of Hot Water Treatment Of In-Shell Pecans On Physicochemical Properties And Consumer Acceptability Of Roasted Pecan Kernels, Karuna Kharel, Witoon Prinyawiwatkul, Veerachandra K. Yemmireddy, Charles J. Graham, Achyut Adhikari

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

The effect of hot water pre-treatment of in-shell pecans on physicochemical properties, consumer acceptance and purchase intent of dehulled and roasted kernels was evaluated. In-shell pecans were first subjected to hot water at 70, 80 and 90 °C for 8.6, 6.6 and 4.6 min respectively and kernels were later dry roasted at 160 °C for 10 min. The physicochemical properties of hot water treated and untreated nuts, before and after roasting were determined. Furthermore, consumer acceptance and purchase intent of the roasted kernels were determined. Hot water treatment, alone and subsequent roasting had minimal effect on pecans’ physicochemical properties. Consumers …


Search For Multimessenger Sources Of Gravitational Waves And High-Energy Neutrinos With Advanced Ligo During Its First Observing Run Antares And Icecube, A. Albert, M. André, M. Anghinolfi, M. Ardid, J. J. Aubert, J. Aublin, T. Avgitas, B. Baret, J. Barrios-Martí, S. Basa, B. Belhorma, V. Bertin, S. Biagi, R. Bormuth, J. Boumaaza, S. Bourret, M. C. Bouwhuis, H. Bró¢Nzaåÿ, R. Bruijn, J. Brunner, J. Busto, A. Capone, L. Caramete, J. Carr, S. Celli, M. Chabab, R. Cherkaoui El Moursli, T. Chiarusi, M. Circella, J. A.B. Coelho Jan 2019

Search For Multimessenger Sources Of Gravitational Waves And High-Energy Neutrinos With Advanced Ligo During Its First Observing Run Antares And Icecube, A. Albert, M. André, M. Anghinolfi, M. Ardid, J. J. Aubert, J. Aublin, T. Avgitas, B. Baret, J. Barrios-Martí, S. Basa, B. Belhorma, V. Bertin, S. Biagi, R. Bormuth, J. Boumaaza, S. Bourret, M. C. Bouwhuis, H. Bró¢Nzaåÿ, R. Bruijn, J. Brunner, J. Busto, A. Capone, L. Caramete, J. Carr, S. Celli, M. Chabab, R. Cherkaoui El Moursli, T. Chiarusi, M. Circella, J. A.B. Coelho

Physics and Astronomy Faculty Publications and Presentations

Astrophysical sources of gravitational waves, such as binary neutron star and black hole mergers or core-collapse supernovae, can drive relativistic outflows, giving rise to non-thermal high-energy emission. High-energy neutrinos are signatures of such outflows. The detection of gravitational waves and high-energy neutrinos from common sources could help establish the connection between the dynamics of the progenitor and the properties of the outflow. We searched for associated emission of gravitational waves and high-energy neutrinos from astrophysical transients with minimal assumptions using data from Advanced LIGO from its first observing run O1, and data from the Antares and IceCube neutrino observatories from …


Electron Density Topological And Adsorbate Orbital Analyses Of Water And Carbon Monoxide Co-Adsorption On Platinum, N. Dimakis, Isaiah Salas, Luis Gonzalez, Neili Loupe, Eugene S. Smotkin Jan 2019

Electron Density Topological And Adsorbate Orbital Analyses Of Water And Carbon Monoxide Co-Adsorption On Platinum, N. Dimakis, Isaiah Salas, Luis Gonzalez, Neili Loupe, Eugene S. Smotkin

Physics and Astronomy Faculty Publications and Presentations

The electron density topology of carbon monoxide (CO) on dry and hydrated platinum is evaluated under the quantum theory of atoms in molecules (QTAIM) and by adsorbate orbital approaches. The impact of water co-adsorbate on the electronic, structural, and vibrational properties of CO on Pt are modelled by periodic density functional theory (DFT). At low CO coverage, increased hydration weakens C-O bonds and strengthens C-Pt bonds, as verified by changes in bond lengths and stretching frequencies. These results are consistent with QTAIM, the 5σ donation-2π∗ backdonation model, and our extended Ï€-attraction σ-repulsion model (extended Ï€-σ model). This work links changes …


Wallaby Early Science – Ii. The Ngc 7232 Galaxy Group, K. Lee-Waddell, Bärbel S. Koribalski, Tobias Westmeier, A. Elagali, B-Q For, D. Kleiner, Juan P. Madrid, A. Popping, T. N. Reynolds, J. Rhee Jan 2019

Wallaby Early Science – Ii. The Ngc 7232 Galaxy Group, K. Lee-Waddell, Bärbel S. Koribalski, Tobias Westmeier, A. Elagali, B-Q For, D. Kleiner, Juan P. Madrid, A. Popping, T. N. Reynolds, J. Rhee

Physics and Astronomy Faculty Publications and Presentations

We report on neutral hydrogen (H I) observations of the NGC 7232 group with the Australian Square Kilometre Array Pathfinder (ASKAP). These observations were conducted as part of the Wide-field ASKAP L-Band Legacy All-sky Blind surveY (WALLABY) Early Science program with an array of 12 ASKAP antennas equipped with Phased Array Feeds, which were used to form 36 beams to map a field of view of 30 deg2. Analysing a subregion of the central beams, we detect 17 H I sources. Eleven of these detections are identified as galaxies and have stellar counterparts, of which five are newly resolved H …