Physical Sciences and Mathematics Commons^™

The P14 Fusion-Associated Small Transmembrane (Fast) Protein Effects Membrane Fusion From A Subset Of Membrane Microdomains, Jennifer A. Corcoran, Jayme Salsman, Roberto De Antueno, Ahmed Touhami, Manfred H. Jericho, Eileen K. Clancy, Roy Duncan

Physics and Astronomy Faculty Publications and Presentations

The reovirus fusion-associated small transmembrane (FAST) proteins are a unique family of viral membrane fusion proteins. These nonstructural viral proteins induce efficient cell-cell rather than virus-cell membrane fusion. We analyzed the lipid environment in which the reptilian reovirus p14 FAST protein resides to determine the influence of the cell membrane on the fusion activity of the FAST proteins. Topographical mapping of the surface of fusogenic p14-containing liposomes by atomic force microscopy under aqueous conditions revealed that p14 resides almost exclusively in thickened membrane microdomains. In transfected cells, p14 was found in both Lubrol WX-and Triton X-100-resistant membrane complexes. Cholesterol depletion …

Spinning-Black-Hole Binaries: The Orbital Hang-Up, Manuela Campanelli, Carlos O. Lousto, Y. Zlochower

Physics and Astronomy Faculty Publications and Presentations

We present the first fully-nonlinear numerical study of the dynamics of highly-spinning-black-hole binaries. We evolve binaries from quasicircular orbits (as inferred from post-Newtonian theory), and find that the last stages of the orbital motion of black-hole binaries are profoundly affected by their individual spins. In order to cleanly display its effects, we consider two equal-mass holes with individual spin parameters S/m2=0.757, both aligned and antialigned with the orbital angular momentum (and compare with the spinless case), and with an initial orbital period of 125M. We find that the aligned case completes three orbits and merges significantly after the antialigned case, …

4,4′-(1,1,1,3,3,3-Hexafluoro­Propane-2,2-Diyl)Bis­(Benzoyl Chloride), Cecilia Rodriguez De Barbarin, Sylvain Bernes, Javier Macossay-Torres, Patrick E. Cassidy

Chemistry Faculty Publications and Presentations

In the structure of the title mol­ecule, C17H8Cl2F6O2, the dihedral angle between the least-squares planes of the benzene rings is 66.31 (15)°. The CF3 groups adopt an eclipsed conformation.

Image Up-Sampling Using The Discrete Wavelet Transform, Laleh Asgharian

Theses and Dissertations - UTB/UTPA

Image up-sampling is an effective technique, useful in today's digital image processing applications and rendering devices. In image up-sampling, an image is enhanced from a lower resolution to a higher resolution with the degree of enhancement depending upon application requirements. It is known that the traditional interpolation based approaches for up-sampling, such as the Bilinear or Bicubic interpolations, blur the resultant images along edges and image features. Furthermore, in color imagery, these interpolation-based up-sampling methods may have color infringing artifacts in the areas where the images contain sharp edges and fine textures. We present an interesting up-sampling algorithm based on …

Consequences Of Disk Scale Height On Lisa Confusion Noise From Close White Dwarf Binaries, M. Benacquista, K. Holley-Bockelmann

Physics and Astronomy Faculty Publications and Presentations

Gravitational radiation from the Galactic population of close white dwarf binaries (CWDBs) is expected to produce a confusion-limited signal at the lower end of the sensitivity band of the Laser Interferometer Space Antenna (LISA). The canonical scale height of the disk population has been taken to be 90 pc for most studies of the nature of this confusion-limited signal. This estimate is probably too low, and the consequences of a more realistic scale height are investigated with a model of the LISA signal due to populations of CWDBs with different scale heights. If the local space density of CWDBs is …

Measurement Of Orbital Decay In The Double Neutron Star Binary Psr B2127+11c, B. A. Jacoby, P. B. Cameron, F. A. Jenet, S. B. Anderson, R. N. Murty, S. R. Kulkarni

Physics and Astronomy Faculty Publications and Presentations

We report the direct measurement of orbital period decay in the double neutron star pulsar system PSR B2127 + 11C in the globular cluster M15 at the rate of (-3.95 ± 0.13) × 10-12, consistent with the prediction of general relativity at the ∼3% level. We find the pulsar mass to be mp = 1.358 ± 0.010 M⊙ and the companion mc = 1.354 ± 0.010 M⊙. We also report long-term pulse timing results for the pulsars PSR B2127+11A and PSR B2127+11B, including confirmation of the cluster proper motion.

Joint Ligo And Tama300 Search For Gravitational Waves From Inspiralling Neutron Star Binaries, B. P. Abbott, R. Abbott, W. G. Anderson, Mario C. Diaz, Wm. R. Johnston, Soma Mukherjee, Cristina V. Torres

Physics and Astronomy Faculty Publications and Presentations

We search for coincident gravitational wave signals from inspiralling neutron star binaries using LIGO and TAMA300 data taken during early 2003. Using a simple trigger exchange method, we perform an intercollaboration coincidence search during times when TAMA300 and only one of the LIGO sites were operational. We find no evidence of any gravitational wave signals. We place an observational upper limit on the rate of binary neutron star coalescence with component masses between 1 and 3M⊙ of 49 per year per Milky Way equivalent galaxy at a 90% confidence level. The methods developed during this search will find application in …

Tomographic Approach To Resolving The Distribution Of Lisa Galactic Binaries, Soumya Mohanty, Rajesh K. Nayak

Physics and Astronomy Faculty Publications and Presentations

The space based gravitational wave detector LISA (Laser Interferometer Space Antenna) is expected to observe a large population of Galactic white dwarf binaries whose collective signal is likely to dominate instrumental noise at observational frequencies in the range 10−4 to 10−3  Hz. The motion of LISA modulates the signal of each binary in both frequency and amplitude—the exact modulation depending on the source direction and frequency. Starting with the observed response of one LISA interferometer and assuming only Doppler modulation due to the orbital motion of LISA, we show how the distribution of the entire binary population in frequency and …

Accurate Evolutions Of Orbiting Black-Hole Binaries Without Excision, M. Campanelli, C. O. Lousto, P. Marronetti, Z. Zlochower

Physics and Astronomy Faculty Publications and Presentations

We present a new algorithm for evolving orbiting black-hole binaries that does not require excision or a corotating shift. Our algorithm is based on a novel technique to handle the singular puncture conformal factor. This system, based on the Baumgarte-Shapiro-Shibata-Nakamura formulation of Einstein’s equations, when used with a ‘‘precollapsed’’ initial lapse, is nonsingular at the start of the evolution and remains nonsingular and stable provided that a good choice is made for the gauge. As a test case, we use this technique to fully evolve orbiting black-hole binaries from near the innermost stable circular orbit regime. We show fourth-order convergence …

Mercury Concentrations In South Texas Game Fishes, E. Anthony Reisinger

Theses and Dissertations - UTB/UTPA

Mercury (Hg) is one of the most ubiquitous and controversial metals in the world primarily due to the toxicity of the organic form of the metal, methylmercury (MeHg). MeHg is a neurotoxin at high levels, known to manifest its effects on humans primarily through consumption of certain fish and marine mammals, which tend to bioaccumulate MeHg in their tissues over time. Increased fish consumption and, thus, mercury intake in residents of coastal areas necessitates a better awareness of MeHg content in game fish species, thus the subject of this study.

Three hundred thirty-nine tissue samples were taken from 19 south …

High-Resolution Studies Of Tropolone In The S 0 And S 1 Electronic States: Isotope Driven Dynamics In The Zero-Point Energy Levels, John C. Keske, Wei Lin, Wallace C. Pringle, Stewart E. Novick, Thomas A. Blake, David F. Plusquellic

Chemistry Faculty Publications and Presentations

Rotationally resolved microwave (MW) and ultraviolet (UV) spectra of jet-cooled tropolone have been obtained in S0 and S1 electronic states using Fourier-transform microwave and UV-laser/molecular-beam spectrometers. In the ground electronic state, the MW spectra of all heavy-atom isotopomers including one O18 and four C13 isotopomers were observed in natural abundance. The OD isotopomer was obtained from isotopically enriched samples. The two lowest tunneling states of each isotopomer except O18 have been assigned. The observed inversion splitting for the OD isotopomer is 1523.227(5) MHz. For the asymmetric C13 structures, the magnitudes of tunneling-rotation interactions are found to diminish with decreasing distance …

Relativistic Binaries In Globular Clusters, Matthew J. Benacquista

Physics and Astronomy Faculty Publications and Presentations

The galactic population of globular- cluster's are old, dense star systems, with a typical cluster containing 104 -107 stars. As an old population of stars, globular clusters contain many collapsed and degenerate objects. As a dense population of stars, globular clusters are the scene of many interesting close dynamical interactions between stars. These dynamical interactions can alter the evolution of individual stars and can produce tight binary systems containing one or- two compact objects. In this review, we discuss the theoretical models of globular cluster evolution and binary evolution, techniques for simulating this evolution which lead to relativistic binaries, and …

Relativistic Three-Body Effects In Black Hole Coalescence, Manuela Campanelli, Miranda Dettwyler, Mark Hannam, Carlos O. Lousto

Physics and Astronomy Faculty Publications and Presentations

Three-body interactions are expected to be common in globular clusters and in galactic cores hosting supermassive black holes. We consider an equal-mass binary black hole system in the presence of a third black hole. Using numerically generated binary black hole initial data sets, and first and second-order post-Newtonian (1PN and 2PN) techniques, we find that the presence of the third black hole has nonnegligible relativistic effects on the location of the binary’s innermost stable circular orbit (ISCO), and that these effects arise at 2PN order. For a stellar-mass black hole binary in orbit about a supermassive black hole, the massive …

Search For Gravitational Waves From Binary Black Hole Inspirals In Ligo Data, B. P. Abbott, R. Abbott, W. G. Anderson, Mario C. Diaz, Wm. R. Johnston, Soumya Mohanty, Soma Mukherjee, Cristina V. Torres

Physics and Astronomy Faculty Publications and Presentations

We report on a search for gravitational waves from binary black hole inspirals in the data from the second science run of the LIGO interferometers. The search focused on binary systems with component masses between 3 and 20M⊙. Optimally oriented binaries with distances up to 1 Mpc could be detected with efficiency of at least 90%. We found no events that could be identified as gravitational waves in the 385.6 hours of data that we searched.

Ferromagnetic Resonance Investigations On Ga0.965mn0.035as Film, S. Balascuta, X. Liu, D. V. Baxter, J. Carini, T. Wojtowicz, Y. Sasaki, J. Furdyna, Mircea Chipara

Physics and Astronomy Faculty Publications and Presentations

Ferromagnetic resonance studies of the temperature dependence of magnetic anisotropies in a Ga0.965Mn0.035As film between 5 and 40K are reported. The in-plane and out-of-the-plane angular dependences of the resonance field were analyzed within the Landau-Lifshitz-Gilbert approach. The second- and fourth-order magnetic anisotropy energies were derived. The temperature dependence of magnetization and of magnetic anisotropy were studied by superconducting quantum interference device and ferromagnetic resonance.

Study Of Metals In Leached Soils Of A Municipal Dumpsite In Tampico, Tamaulipas, Mexico: Preliminary Results, P. F. Rodríguez-Espinosa, D. Chazaro Mendoza, J. A. Montes De Oca, G. Sánchez Torres E., Alejandro Fierro-Cabo

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

The Zapote dumpsite measures 420000 m 2 and is 28 years old; an estimated 2.5 millions tons of waste have accumulated on the site (household waste, clinical waste, commercial waste). The thickness of the waste is 3 to 9 meters. Since operations began, no control regulations have existed on the residues received. The Zapote dumpsite is located within a salt-marsh between a system of channels and river lagoons of brackish water, located in a tropical sedimentary environment in the urban zone of Tampico, Tamaulipas, Mexico. Recently, the Zapote has been closed and work is presently underway in its rehabilitation since …

Electrical Pulse Formation During High Temperature Reaction Between Ni And Al, Mona Setoodeh, Karen S. Martirosyan, Dan Luss

Physics and Astronomy Faculty Publications and Presentations

An electric voltage pulse (duration of about 2ms) with an amplitude of up to 0.6V was generated during the reaction between nickel and aluminum powders by a high temperature moving reaction front. The electrical signal formed during the initial stages of the combustion was annihilated before the moving front attained its maximum temperature. The voltage amplitude and combustion temperature depended on the particle size of the reactants as well as the Al to Ni ratio in the reactant mixture, and their largest values were attained for a mixture containing 27–31.5wt% Al. The combustion temperature increased when smaller Al particles were …

The Lazarus Project. Ii. Spacelike Extraction With The Quasi-Kinnersley Tetrad, Manuela Campanelli, Bernard Kelly, Carlos O. Lousto

Physics and Astronomy Faculty Publications and Presentations

The Lazarus project was designed to make the most of limited 3D binary black-hole simulations, through the identification of perturbations at late times, and subsequent evolution of the Weyl scalar Ψ4 via the Teukolsky formulation. Here we report on new developments, employing the concept of the “quasi-Kinnersley” (transverse) frame, valid in the full nonlinear regime, to analyze late-time numerical space-times that should differ only slightly from Kerr. This allows us to extract the essential information about the background Kerr solution, and through this, to identify the radiation present. We explicitly test this procedure with full-numerical evolutions of Bowen-York data for …

Detecting Submarine Groundwater Discharge With Synoptic Surveys Of Sediment Resistivity, Radium, And Salinity, John A. Breier, Crystaline F. Breier, Henrietta Edmonds

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

A synoptic geophysical and geochemical survey was used to investigate the occurrence and spatial distribution of submarine discharges of water to upper Nueces Bay, Texas. The 17 km survey incorporated continuous resistivity profiling; measurements of surface water salinity, temperature, and dissolved oxygen; and point measurements of dissolved Ra isotopes. The survey revealed areas of interleaving, vertical fingers of high and low conductivity extending up through 7 m of bay bottom sediments into the surface water, located within 100 m of surface salinity and dissolved Ra maxima along with peaks in water temperature and lows in dissolved oxygen. These results indicate …

Discovery And Characterization Of The Cryptic Psi Subunit Of The Pseudomonad Dna Replicase, Thale C. Jarvis, Amber A. Beaudry, James M. Bullard, Urs Ochsner, H. Garry Dallmann, Charles S. Mchenry

Chemistry Faculty Publications and Presentations

We previously reconstituted a minimal DNA replicase from Pseudomonas aeruginosa consisting of α and ϵ (polymerase and editing nuclease), β (processivity factor), and the essential τ, δ, and δ′ components of the clamp loader complex (Jarvis, T., Beaudry, A., Bullard, J., Janjic, N., and McHenry, C. (2005) J. Biol. Chem. 280, 7890-7900). In Escherichia coli DNA polymerase III holoenzyme, χ and Ψ are tightly associated clamp loader accessory subunits. The addition of E. coli χΨ to the minimal P. aeruginosa replicase stimulated its activity, suggesting the existence of χ and Ψ counterparts in P. aeruginosa. The P. aeruginosa χ …

An Improvement And A Generalization Of Zippel's Sparse Multivariate Polynomial Interpolation Algorithm, Michael D. Brazier

Theses and Dissertations - UTB/UTPA

The algorithm most often used for the problem of interpolating sparse multivariate polynomials from their values is Zippel's probabilistic algorithm (1988). The algorithm evaluates the function to be interpolated at a significant number of points, and for many problems of interest processing evaluations dominates the running time. This thesis presents an improvement of Zippel's algorithm, which decreases the number of evaluations needed for an interpolation by using transposed Vandermonde systems for the univariate interpolation step of Zippel's algorithm. The technique also allows a more general form of the algorithm: it becomes possible to interpolate more than one variable within a …

Improving The Performance Of Nested Loop Algorithm Using Separators, Nachiappan N. Nachiappan

Theses and Dissertations - UTB/UTPA

This thesis studies the properties of distance-based outliers and a better detection method for large multi-dimensional datasets. Outlier detection is an important task to find out the objects that deviate in a high ratio from the rest of the objects. The proposed algorithm breaks the data set into divisions and sets the area of access for each division, thus reducing the unnecessary access for a major set of elements. This algorithm reduces the run time of the existing algorithm by using separators. Datasets of varying sizes have been tested to analyze the empirical values of these procedures. Effective data structures …

Numerical Integration Of The Teukolsky Equation In The Time Domain, Enrique Pazos-Avalos, Carlos O. Lousto

Physics and Astronomy Faculty Publications and Presentations

We present a fourth-order convergent, (2+1)-dimensional, numerical formalism to solve the Teukolsky equation in the time domain. Our approach is first to rewrite the Teukolsky equation as a system of first-order differential equations. In this way we get a system that has the form of an advection equation. This is then used in combination with a series expansion of the solution in powers of time. To obtain a fourth-order scheme we kept terms up to fourth derivative in time and use the advectionlike system of differential equations to substitute the temporal derivatives by spatial derivatives. This scheme is applied to …

Potential Of Modis Evi And Surface Temperature For Directly Estimating Per-Pixel Ecosystem C Fluxes, Abdullah Rahman, Daniel A. Sims, Vicente D. Cordova, Bassil Z. El-Masri

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

We tested the potential of estimating per-pixel gross primary production (GPP) directly from the MODIS enhanced vegetation index (EVI) and respiration directly from MODIS surface temperature (MOD11). Carbon flux data were obtained from 10 eddy covariance tower sites representing a wide range of North American vegetations. The correlation between across-site tower GPP and EVI was comparable (r = 0.77) to that between tower GPP and MOD17-GPP (r = 0.73), suggesting that EVI could be used to provide reasonably accurate direct estimates of GPP on a truly per-pixel basis. There was also a strong relationship (r2 = 0.67) between respiration and …

A Bacillus Thuringiensis Isolation Method Utilizing A Novel Stain, Low Selection And High Throughput Produced Atypical Results, Joanne Rampersad-Ammons, David R. Ammons

Chemistry Faculty Publications and Presentations

Background

Bacillus thuringiensis is a bacterium known for producing protein crystals with insecticidal properties. These toxins are widely sought after for controlling agricultural pests due to both their specificity and their applicability in transgenic plants. There is great interest in isolating strains with improved or novel toxin characteristics, however isolating B. thuringiensis from the environment is time consuming and yields relatively few isolates of interest. New approaches to B. thuringiensis isolation have been, and continue to be sought. In this report, candidate B. thuringiensis isolates were recovered from environmental samples using a combination of a novel stain, high throughput and …

Α-Enhanced Integrated Lick/Ids Spectral Indices And Milky Way And M31 Globular Clusters And Early-Type Galaxies, Hyun Chul Lee, Guy Worthey

Physics and Astronomy Faculty Publications and Presentations

All 25 Lick/IDS spectral indices have been computed for the integrated light of simple stellar populations over broad ranges of age and metallicity and with effects from horizontal-branch stars fully implemented. Our models employ α-enhanced isochrones at the sub-solar metallicity regime, but solar-scaled ones at solar and super-solar metallicity. We have also employed the updated response functions of Houdashelt et al. at the solar and super-solar metallicity regime, so that we could assess the light-element enhancement phenomena seen from metal-rich early-type galaxies. For Balmer indices a significant response was noted for Hγ and Hδ when α-elements are enhanced, but Hβ …

A Nested-Pcr With An Internal Amplification Control For The Detection And Differentiation Of Bartonella Henselae And B. Clarridgeiae: An Examination Of Cats In Trinidad, Joanne Rampersad, John D. Watkins, Michael S. Samlal, Raymond Deonanan, Shalini Ramsubeik, David Ammons

Chemistry Faculty Publications and Presentations

Background

Bartonella species are bacterial blood parasites of animals capable of causing disease in both animals and man. Cat-Scratch Disease (CSD) in humans is caused mainly by Bartonella henselae and is acquired from the cat, which serves as a reservoir for the bacteria. A second species, B. clarridgeiae is also implicated in the disease. Diagnosis of Bartonellosis by culture requires a week or more of incubation on enriched media containing blood, and recovery is often complicated by faster growing contaminating bacteria and fungi. PCR has been explored as an alternative to culture for both the detection and species identification of …

Entropy-Based 2d Image Dissimilarity Measure, Meng-Hung Wu

Theses and Dissertations - UTB/UTPA

Traditional histogram or statistics based 2D image similarity/dissimilarity metrics fail to handle conjugate pair of black and white images, due to the lack of spatial information in the measurement. Recently proposed Compression-based Dissimilarity Measure (CDM) [1] based on the concept of Kolmogorov complexity has provided a different paradise for similarity measurement. However, without a clear definition how to “concatenate” two 2D images, CDM has difficulties to directly apply with 2D images. In this thesis, an entropy -based 2D image dissimilarity measure is proposed within the same Kolmogorov complexity paradise. The spatial relationship between images is embedded in our metric, and …

Naboh System: Gathering Intelligence From Traffic Patterns, Angelica M. Delgado

Theses and Dissertations - UTB/UTPA

Network traffic anomalies are important indicators of problematic traffic over a network. Network activity has patterns associated with it depending on the applications running on the local hosts connected to the network. There are traffic parameters into which network traffic of a local host can be divided: bandwidth usage, number of remote hosts that a local host is connecting to and vice versa, and number of ports used by the local host. This thesis develops a system for detecting and profiling network anomalies by analyzing traffic parameters using intelligent computational techniques. The developed system gathers intelligence by examining only the …

Pulsar Timing And The Detection Of Black Hole Binary Systems In Globular Clusters, Fredrick A. Jenet, Teviet Creighton, Andrea Lommen

Physics and Astronomy Faculty Publications and Presentations

The possible existence of intermediate-mass binary black holes (IMBBHs) in globular clusters (GCs) offers us a unique geometry in which to detect spacetime oscillations. For certain pulsar-IMBBH configurations possible within a GC, the usual far-field plane wave approximation for the IMBBH metric perturbation severely underestimates the induced pulse time-of-arrival (TOA) fluctuations. In this Letter, the expected TOA fluctuations induced by an IMBBH lying close to the line of sight between a pulsar and the Earth are calculated for the first time. For an IMBBH consisting of 10 and 103 M⊙ components, a 10 yr orbital period, and located 0.1 lt-yr …