Physical Sciences and Mathematics Commons^™

Ground State Phase Diagram Of The One-Dimensional Bose-Hubbard Model From Restricted Boltzmann Machines, Kristopher Mcbrian, Giuseppe Carleo, Ehsan Khatami

Faculty Publications

Motivated by recent advances in the representation of ground state wavefunctions of quantum many-body systems using restricted Boltzmann machines as variational ansatz, we utilize an open-source platform for constructing such ansatz called NetKet to explore the extent of applicability of restricted Boltzmann machines to bosonic lattice models. Within NetKet, we design and train these machines for the one-dimensional Bose-Hubbard model through a Monte Carlo sampling of the Fock space. We vary parameters such as the strength of the onsite repulsion, the chemical potential, the system size and the maximum site occupancy and use converged equations of state to identify phase …

Clarifying The Interpretation Of Carbon Use Efficiency In Soil Through Methods Comparison, Kevin M. Geyer, Paul Dijkstra, Robert Sinsabaugh, Serita D. Frey

Faculty Publications

Accurate estimates of microbial carbon use efficiency (CUE) are required to predict how global change will impact microbially-mediated ecosystem functions such as organic matter decomposition. Multiple approaches are currently used to quantify CUE but the extent to which estimates reflect methodological variability is unknown. This limits our ability to apply or cross-compare published CUE values. Here we evaluated the performance of five methods in a single soil under standard conditions. The microbial response to three substrate amendment rates (0.0, 0.05, and 2.0 mg glucose-C g−1 soil) was examined using: 13C and 18O isotope tracing approaches which estimate CUE based on …

Internet Of Things In Smart Agriculture: Enabling Technologies, Abdul Salam, Syed Shah

Faculty Publications

In this paper, an IoT technology research and innovation roadmap for the field of precision agriculture (PA) is presented. Many recent practical trends and the challenges have been highlighted. Some important objectives for integrated technology research and education in precision agriculture are described. Effective IoT based communications and sensing approaches to mitigate challenges in the area of precision agriculture are presented.

Variations In The Abundance And Distribution Of Aggregates In The Ross Sea, Antarctica, Vernon L. Asper, Walker O. Smith

Faculty Publications

The vertical distribution and temporal changes in aggregate abundance and sizes were measured in the Ross Sea, Antarctica between 2002 and 2005 to acquire a more complete understanding of the mechanisms and rates of carbon export from the euphotic layer. Aggregate abundance was determined by photographic techniques, and water column parameters (temperature, salinity, fluorescence, transmissometry) were assessed from CTD profiles. During the first three years the numbers of aggregates increased seasonally, being much more abundant within the upper 200 m in late summer than in early summer from 50 to 100 m (12.5 L^–1 in early summer vs. 42.9 …

Galileo's Telescope, Christopher Sirola

Faculty Publications

One of the most consequential inventions of modern times is the telescope. Almost immediately upon turning it to the skies, Galileo made discoveries that altered our perceptions of our place in the cosmos forever: features on the Moon, the rotation of the Sun, the composition of the Milky Way, the phases of Venus, and the four large moons of Jupiter.

Principal Component Analysis Of The Magnetic Transition In The Three-Dimensional Fermi-Hubbard Model, Ehsan Khatami

Faculty Publications

Machine learning techniques have been widely used in the study of strongly correlated systems in recent years. Here, we review some applications to classical and quantum many-body systems and present results from an unsupervised machine learning technique, the principal component analysis, employed to identify the finite-temperature phase transition of the three-dimensional Fermi-Hubbard model to the antiferromagnetically ordered state. We find that this linear method can capture the phase transition as well as other more complicated and nonlinear counterparts.

The Search For Microbial Martian Life And American Buddhist Ethics, Daniel S. Capper

Faculty Publications

Multiple searches hunt for extraterrestrial life, yet the ethics of such searches in terms of fossil and possible extant life on Mars have not been sufficiently delineated. In response, in this essay I propose a tripartite ethic for searches for microbial Martian life that consists of default nonharm toward potential living beings, default nonharm to the habitats of potential living beings, but also responsible, restrained scientific harvesting of some microbes in limited transgression of these default nonharm modes. Although this multifaceted ethic remains secular and hence adaptable to space research settings, it arises from both a qualitative analysis of authoritative …

Improved N-Dimensional Data Visualization From Hyper-Radial Values, Todd J. Paciencia, Trevor J. Bihl, Kenneth W. Bauer

Faculty Publications

Higher-dimensional data, which is becoming common in many disciplines due to big data problems, are inherently difficult to visualize in a meaningful way. While many visualization methods exist, they are often difficult to interpret, involve multiple plots and overlaid points, or require simultaneous interpretations. This research adapts and extends hyper-radial visualization, a technique used to visualize Pareto fronts in multi-objective optimizations, to become an n-dimensional visualization tool. Hyper-radial visualization is seen to offer many advantages by presenting a low-dimensionality representation of data through easily understood calculations. First, hyper-radial visualization is extended for use with general multivariate data. Second, a method …

Y2O3 Optical Constants Between 5 Nm And 50 Nm, Joseph B. Muhlestein, Benjamin D. Smith, Margaret Miles, Stephanie M. Thomas, Anthony Willey, David D. Allred, R. Steven Turley

Faculty Publications

We report optical constants of e-beam evaporated yttrium oxide Y₂O₃ thin films as determined from angle-dependent reflectance measurements at wavelengths from 5 to 50 nm. Samples were measured using synchrotron radiation at the Advanced Light Source. The experimental reflectance data were fit to obtain values for the index of refraction and thin film roughness. We compare our computed constants with those of previous researchers and those computed using the independent atom approximation from the CXRO website. We found that the index of refraction near 36 nm is much lower than previous data from Tomiki as reported by …

Developmental Test And Requirements Best Practices Of Successful Information Systems Efforts Using Agile Methods, Jeremy D. Kramer, Torrey J. Wagner

Faculty Publications

This article provides insights into the current state of developmental testing (DT) and requirements management in Department of Defense information systems employing Agile development. The authors describe the study methodology and provide an overview of Agile development and testing. Insights are described for requirements, detailed planning, test execution, and reporting. This work articulates best practices related to DT and requirements management strategies for programs employing modernized Software Development Life Cycle practices.

Laser-Induced Plasma Analysis For Surrogate Nuclear Debris, Michael B. Shattan, John Auxier, A. C. Stowe, Christian G. Parigger

Faculty Publications

This work identifies analytical lines in laser-induced plasma for chemical analyses of major elements found in surrogate nuclear debris. These lines are evaluated for interferences and signal strength to insure they would be useful to measure relative concentrations. Compact, portable instruments are employed and can be included as part of a mobile nuclear forensics laboratory for field screening of nuclear debris and contamination. The average plasma temperature is measured using the well-established Boltzmann plot technique, and plasma's average electron density is determined using empirical formulae based on Stark broadening of the H-alpha line. These measurements suggest existence of partial local …

Carbon In The Deep Biosphere: Forms, Fates, And Biogeochemical Cycling, Susan Q. Lang, Magdalena R. Osburn, Andrew D. Steen

Faculty Publications

Building on the synthesis of carbon reservoirs in Earth's subsurface, this chapter focuses on the forms, cycling, and fate of the carbon supporting microbial life in the terrestrial and marine subsurface. As the subsurface is estimated to host a vast reservoir of life on Earth, identifying the carbon compounds that life uses for energy and growth is key to understanding ecosystem functioning in the past and at present, and also for extrapolating these findings to the search for life in the universe. This chapter highlights advances in quantifying small carbon compounds, measuring rates of carbon turnover, and the fate of …

Study Of The Reactions E+E-→Π+Π-Π0Π0Π0 And Π+Π-Π0Π0Η At Center-Of-Mass Energies From Threshold To 4.35 Gev Using Initial-State Radiation, J. P. Lees, V. Poireau, V. Tisserand, E. Grauges, A. Palano, G. Eigen, D. N. Brown, Yu G. Kolomensky, M. Fritsch, H. Koch, T. Schroeder, C. Hearty, T. S. Mattison, J. A. Mckenna, R. Y. So, V. E. Blinov, A. R. Buzykaev, V. P. Druzhinin, V. B. Golubev, E. A. Kozyrev, Milind Purohit, Jeffrey Wilson, Et. Al.

Faculty Publications

We study the processes e⁺e⁻ → π⁺π⁻π⁰π⁰π⁰nγ in which an energetic photon is radiated from the initial state. The data are collected with the BABAR detector at SLAC. About 14 000 and 4700 events, respectively, are selected from a data sample corresponding to an integrated luminosity of 469 fb⁻¹. The invariant mass of the hadronic final state defines the effective e⁺e⁻ center-of-mass energy. From the mass spectra, the first precise measurement of the e⁺e⁻ → π⁺π^{− …}

Measurement Of The Branching Fraction And Time-Dependent Cp Asymmetry For B0→J/Ψπ0 Decays, B. Pal, A.J. Schwartz, H. Aihara, S. Al Said, D. M. Asner, H. Atmacan, V. Aulchenko, T. Aushev, R. Ayad, I. Badhrees, S. Bahinipati, V. Bansal, P. Behera, C. Beleño, B. Bhuyan, T. Bilka, J. Biswal, A. Bozek, M. Bračko, L. Cao, Milind Purohit, Et. Al.

Faculty Publications

We measure the branching fraction and time-dependent CP-violating asymmetry for B0 → J=ψπ0 decays using a data sample of 711 fb⁻¹ collected on the ϒ(4S) resonance by the Belle experiment running at the KEKB e⁺e⁻ collider. The branching fraction is measured to be B(B⁰ → J/_ψπ⁰) ¼ [1.62 ± 0.11(stat) ± 0.06(syst) × 10⁻⁵, which is the most precise measurement to date. The measured CP asymmetry parameters are S =−0.59 ±0.19(stat) 0.03(syst) and A = −0.15 ± 0.14(stat) ^+0.04 _−0.03 (syst). The mixing-induced CP asymmetry (S) differs …

Positive Association Between Dietary Inflammatory Index And The Risk Of Osteoporosis: Results From The Koges_Health Examinee (Hexa) Cohort Study, Hye Sun Kim, Cheongmin Sohn, Minji Kwon, Woori Na, Nitin Shivappa, James R. Hébert, Mi Kyung Kim

Faculty Publications

Previous studies have found that diet’s inflammatory potential is related to various diseases. However, little is known about its relationship with osteoporosis. The aim of this study was to investigate the association between the dietary inflammatory index (DII®) and osteoporosis risk in a large-scale prospective cohort study in Korea. This prospective cohort study included 159,846 participants (men 57,740; women 102,106) from South Korea with a mean follow-up of 7.9 years. The DII was calculated through a validated semi-quantitative FFQ (SQFFQ), and information on osteoporosis was self-reported by the participants. Analyses were performed by using a multivariable Cox proportional hazard model. …

Interactions Between Disciplinary Practices And Joint Work In Undergraduate Physics Research Experiences, Gina Quan, Chandra Turpen, Andrew Elby

Faculty Publications

We analyze how participating in undergraduate research experiences (UREs) influenced physics students’ trajectories of participation within the community of practice of physics researchers. Students in the study participated in an elective seminar in which they were paired with graduate student and faculty mentors on physics research projects and participated in weekly discussions about research. Using video data from student interviews and mentor interviews, we characterize two aspects of students’ engagement in the physics community of practice. First, we find variations in their engagement in physics practice, which we characterize as physics activities that are connected and purposeful. Second, we characterize …

Mirach’S Goblin: Discovery Of A Dwarf Spheroidal Galaxy Behind The Andromeda Galaxy, David Martínez-Delgado, Eva Grebel, Behnam Javanmardi, Walter Boschin, Nicolas Longeard, Julio Carballo-Bello, Dmitry Makarov, Michael Beasley, Giuseppe Donatiello, Martha Haynes, Duncan Forbes, Aaron Romanowsky

Faculty Publications

Context. It is of broad interest for galaxy formation theory to carry out a full inventory of the numbers and properties of dwarf galaxies, both satellite and isolated, in the Local Volume.Aims. Ultra-deep imaging in wide areas of the sky with small amateur telescopes can help to complete the census of these hitherto unknown low-surface-brightness galaxies, which cannot be detected by the current resolved stellar population and HI surveys. We report the discovery of Donatiello I, a dwarf spheroidal galaxy located one degree from the star Mirach (β And) in a deep image taken with an amateur telescope.Methods. The color-magnitude …

Measurement Of The Γ*Γ* → Η' Transition Form Factor, J.P. Lees, V. Poireau, V. Tisserand, E. Grauges, A. Palano, G. Eigen, D. N. Brown, Yu G. Kolomensky, M. Fritsch, H. Koch, T. Schroeder, C. Hearty, T. S. Mattison, J. A. Mckenna, R. Y. So, V. E. Blinov, A. R. Buzykaev, V. P. Druzhinin, V. B. Golubev, Milind Purohit, Et. Al.

Faculty Publications

We study the process e⁺e⁻→e⁺e⁻η′ in the double-tag mode and measure for the first time the γ^*γ^*→ η′ transition form factor Fη′ (Q ² ₁ , Q² ₂) in the momentum-transfer range 2< Q ² ₁ , Q² ₂ 60 GeV ² . The analysis is based on a data sample corresponding to an integrated luminosity of around 469     fb^{− 1} collected at the PEP-II e ⁺e ⁻ collider with the BABAR detector at center-of-mass energies near 10.6 GeV.

1; Q2 2Þ in the …

Synthesis Of 5,6-Diaminoacenaphthylene By Reduction Of Sterically Crowded Nitro Groups With Sodium Dithionite, Amber J. Dood, Patrick A. Fisher, Christine L. Bodden, Luke J. Peterson, Kathryn A. Lindberg, Trevor A. Coeling, Douglas C. Yarbrough, Jason G. Gillmore

Faculty Publications

5,6-Diaminoacenaphthylene was synthesized in four steps from acenaphthene. This seemingly simple molecule provides unique synthetic challenges because it is relatively difficult to reduce the nitro groups and the molecule contains a particularly reactive double bond. It was determined that the only feasible sequence for the synthesis was to nitrate acenaphthene, then brominate, eliminate, and finally selectively reduce. Several reduction methods were attempted before finding one that would completely reduce both nitro groups while leaving the double bond intact.

Angular Momentum And Galaxy Formation Revisited: Scaling Relations For Disks And Bulges, S. Michael Fall, Aaron Romanowsky

Faculty Publications

We show that the stellar specific angular momentum j, mass M, and bulge fraction of normal galaxies of all morphological types are consistent with a simple model based on a linear superposition of independent disks and bulges. In this model, disks and bulges follow scaling relations of the form and with but offset from each other by a factor of 8 ± 2 over the mass range . Separate fits for disks and bulges alone give and , respectively. This model correctly predicts that galaxies follow a curved 2D surface in the 3D space of , , and . We …

Introduction To The French Geotraces North Atlantic Transect (Ga01): Geovide Cruise, Géraldine Sarthou, Pascale Lherminier, Eric P. Achterberg, Fernando Alonso-Pérez, Eva Bucciarelli, Julia Boutorh, Vincent Bouvier, Edward A. Boyle, Pierre Branellec, Lidia I. Carracedo, Nuria Casacuberta, Maxi Castrillejo, Marie Cheize, Leonardo Contreira Pereira, Daniel Cossa, Nathalie Daniault, Emmanuel De Saint-Léger, Frank Dehairs, Feifei Deng, Floriane Desprez De Gésincourt, Jérémy Devesa, Lorna Foliot, Debany Fonseca-Batista, Morgane Gallinari, Maribel I. Garciá-Ibáñez, Arthur Gourain, Emilie Grossteffan, Michel Hamon, Lars Eric Heimbürger, Gideon M. Henderson, Catherine Jeandel, Catherine Kermabon, François Lacan

Faculty Publications

© 2018 Author(s). The GEOVIDE cruise, a collaborative project within the framework of the international GEOTRACES programme, was conducted along the French-led section in the North Atlantic Ocean (Section GA01), between 15 May and 30 June 2014. In this special issue (https://www.biogeosciences.net/special-issue900.html), results from GEOVIDE, including physical oceanography and trace element and isotope cyclings, are presented among 18 articles. Here, the scientific context, project objectives, and scientific strategy of GEOVIDE are provided, along with an overview of the main results from the articles published in the special issue.

Transfer Learning With Deep Recurrent Neural Networks For Remaining Useful Life Estimation, Ansi Zhang, Honglei Wang, Shaobo Li, Yuxin Cui, Guanci Yang, Jianjun Hu

Faculty Publications

Prognostics, such as remaining useful life (RUL) prediction, is a crucial task in condition-based maintenance. A major challenge in data-driven prognostics is the difficulty of obtaining a sufficient number of samples of failure progression. However, for traditional machine learning methods and deep neural networks, enough training data is a prerequisite to train good prediction models. In this work, we proposed a transfer learning algorithm based on Bi-directional Long Short-Term Memory (BLSTM) recurrent neural networks for RUL estimation, in which the models can be first trained on different but related datasets and then fine-tuned by the target dataset. Extensive experimental results …

Transfer Learning With Deep Recurrent Neural Networks For Remaining Useful Life Estimation, Ansi Zhang, Shaobo Li, Yuxin Cui, Zhonghao Liu, Guanci Yang, Jianjun Hu

Faculty Publications

Prognostics, such as remaining useful life (RUL) prediction, is a crucial task in condition-based maintenance. A major challenge in data-driven prognostics is the difficulty of obtaining a sufficient number of samples of failure progression. However, for traditional machine learning methods and deep neural networks, enough training data is a prerequisite to train good prediction models. In this work, we proposed a transfer learning algorithm based on Bi-directional Long Short-Term Memory (BLSTM) recurrent neural networks for RUL estimation, in which the models can be first trained on different but related datasets and then fine-tuned by the target dataset. Extensive experimental results …

The Dragonfly Nearby Galaxies Survey. V. Hst/Acs Observations Of 23 Low Surface Brightness Objects In The Fields Of Ngc 1052, Ngc 1084, M96, And Ngc 4258, Yotam Cohen, Pieter Van Dokkum, Shany Danieli, Aaron Romanowsky, Roberto Abraham, Allison Merritt, Jielai Zhang, Lamiya Mowla, J. Diederik Kruijssen, Charlie Conroy, Asher Wasserman

Faculty Publications

We present Hubble Space Telescope/Advanced Camera for Surveys (ACS) imaging of 23 very low surface brightness (μ e,V ~ 25–27.5) galaxies detected in the fields of four nearby galaxy groups. These objects were selected from deep optical imaging obtained with the Dragonfly Telephoto Array. Seven are newly identified, while most of the others had been seen previously in visual surveys of deep photographic plates and more recent surveys. Few have previously been studied in detail. From the ACS images, we measure distances to the galaxies using both the tip of the red giant branch method and the surface brightness fluctuations …

Remains Of The 19th Century: Deep Storage Of Contaminated Hydraulic Mining Sediment Along The Lower Yuba River, California, Tyler Nakamura, Michael Bliss Singer, Emmanuel Gabet

Faculty Publications

Since the onset of hydraulic gold mining in California’s Sierra Nevada foothills in 1852, the environmental damage caused by displacement and storage of hydraulic mining sediment (HMS) has been a significant ecological problem downstream. Large volumes of mercury-laden HMS from the Yuba River watershed were deposited within the river corridor, creating the anthropogenic Yuba Fan. However, there are outstanding uncertainties about how much HMS is still contained within this fan. To quantify the deep storage of HMS in the Yuba Fan, we analyzed mercury concentrations of sediment samples collected from borings and outcrops at multiple depths. The mercury concentrations served …

Sequence Pattern Mining With Variables, James S. Okolica, Gilbert L. Peterson, Robert F. Mills, Michael R. Grimaila

Faculty Publications

Sequence pattern mining (SPM) seeks to find multiple items that commonly occur together in a specific order. One common assumption is that all of the relevant differences between items are captured through creating distinct items, e.g., if color matters then the same item in two different colors would have two items created, one for each color. In some domains, that is unrealistic. This paper makes two contributions. The first extends SPM algorithms to allow item differentiation through attribute variables for domains with large numbers of items, e.g, by having one item with a variable with a color attribute rather than …

A Time Series Of Water Column Distributions And Sinking Particle Flux Of Pseudo-Nitzschia And Domoic Acid In The Santa Barbara Basin, California, Blaire P. Umhau, Claudia R. Benitez-Nelson, Clarissa R. Anderson, Kelly Mccabe, Christopher Burrell

Faculty Publications

Water column bulk Pseudo-nitzschia abundance and the dissolved and particulate domoic acid (DA) concentrations were measured in the Santa Barbara Basin (SBB), California from 2009–2013 and compared to bulk Pseudo-nitzschia cell abundance and DA concentrations and fluxes in sediment traps moored at 147 m and 509 m. Pseudo-nitzschia abundance throughout the study period was spatially and temporally heterogeneous (L⁻¹ to 3.8 × 10⁶ cells L⁻¹, avg. 2 × 10⁵ ± 5 × 10⁵ cells L⁻¹) and did not correspond with upwelling conditions or the total DA (tDA) concentration, which was also spatially …

A Time Series Of Water Column Distributions And Sinking Particle Flux Of Pseudo-Nitzschia And Domoic Acid In The Santa Barbara Basin, California, Blaire P. Umhau, Claudia R. Benitez-Nelson, Clarissa R. Anderson, Kelly Mccabe, Christopher Burrell

Faculty Publications

Water column bulk Pseudo-nitzschia abundance and the dissolved and particulate domoic acid (DA) concentrations were measured in the Santa Barbara Basin (SBB), California from 2009–2013 and compared to bulk Pseudo-nitzschia cell abundance and DA concentrations and fluxes in sediment traps moored at 147 m and 509 m. Pseudo-nitzschia abundance throughout the study period was spatially and temporally heterogeneous (L−1 to 3.8 × 106 cells L−1 , avg. 2 × 105 ± 5 × 105 cells L−1 ) and did not correspond with upwelling conditions or the total DA (tDA) concentration, which was also spatially and temporally diverse (1000 cells L−1 …

Reduced Carbon Use Efficiency And Increased Microbial Turnover With Soil Warming, Jianwei Li, Gangsheng Wang, Melanie A. Mayes, Steven D. Allison, Serita D. Frey, Zheng Shi, Xiao-Ming Hu, Yiqi Luo, Jerry M. Melillo

Faculty Publications

Global soil carbon (C) stocks are expected to decline with warming, and changes in microbial processes are key to this projection. However, warming responses of critical microbial parameters such as carbon use efficiency (CUE) and biomass turnover (rB) are not well understood. Here, we determine these parameters using a probabilistic inversion approach that integrates a microbial-enzyme model with 22 years of carbon cycling measurements at Harvard Forest. We find that increasing temperature reduces CUE but increases rB, and that two decades of soil warming increases the temperature sensitivities of CUE and rB. These temperature sensitivities, which are derived from decades-long …

Receiver-Initiated Handshaking Mac Based On Traffic Estimation For Underwater Sensor Networks, Yuan Dong, Lina Pu, Yu Luo, Zheng Peng, Haining Mo, Yun Meng, Yi Zhao, Yuzhi Zhang

Faculty Publications

In underwater sensor networks (UWSNs), the unique characteristics of acoustic channels have posed great challenges for the design of medium access control (MAC) protocols. The long propagation delay problem has been widely explored in recent literature. However, the long preamble problem with acoustic modems revealed in real experiments brings new challenges to underwater MAC design. The overhead of control messages in handshaking-based protocols becomes significant due to the long preamble in underwater acoustic modems. To address this problem, we advocate the receiver-initiated handshaking method with parallel reservation to improve the handshaking efficiency. Despite some existing works along this direction, the …