Physical Sciences and Mathematics Commons^™

Borromean: Preserving Binary Node Attribute Distributions In Large Graph Generations, Clayton A. Gandy

USF Tampa Graduate Theses and Dissertations

Real graph datasets are important for many science domains, from understanding epidemics to modeling traffic congestion. To facilitate access to realistic graph datasets, researchers proposed various graph generators typically aimed at representing particular graph properties. While many such graph generators exist, there are few techniques for generating graphs where the nodes have binary attributes. Moreover, generating such graphs in which the distribution of the node attributes preserves real-world characteristics is still an open challenge. This thesis introduces Borromean, a graph generating algorithm that creates synthetic graphs with binary node attributes in which the attributes obey an attribute-specific joint degree distribution. …

Sustainable Production Of Bio-Based Succinic Acid From Plant Biomass, Enlin Lo

USF Tampa Graduate Theses and Dissertations

Succinic acid is a compound used for manufacturing lacquers, resins, and other coating chemicals. It is also used in the food and beverage industry as a flavor additive. It is predominantly manufactured from petrochemicals, but it can also be produced more sustainably by fermentation of sugars from renewable feedstocks (biomass). Bio-based succinic acid has excellent potential for becoming a platform chemical (building block) for commodity and high-value chemicals.

In this study, we focused on the production of bio-based succinic acid from the fiber of sweet sorghum (SS), which has a high fermentable sugar content and can be cultivated in a …

Ecophysiology Of Oxygen Supply In Cephalopods, Matthew A. Birk

USF Tampa Graduate Theses and Dissertations

Cephalopods are an important component of many marine ecosystems and support large fisheries. Their active lifestyles and complex behaviors are thought to be driven in large part by competition with fishes. Although cephalopods appear to compete successfully with fishes, a number of their important physiological traits are arguably inferior, such as an inefficient mode of locomotion via jet propulsion and a phylogenetically limited means of blood-borne gas transport. In active shallow-water cephalopods, these traits result in an interesting combination of very high oxygen demand and limited oxygen supply. The ability to maintain active lifestyles despite these metabolic constraints makes cephalopods …

A Key Based Obfuscation And Anonymization Of Behavior Vhdl Models, Balausha Varshini Kandikonda

USF Tampa Graduate Theses and Dissertations

Intellectual Property (IP) based Integrated Circuit (IC) design is an established approach for the design of a complex System-on-Chip (SoC). Porting the preparatory designs to third-party without enough security margin exposes an attacker to perform reverse engineering (RE) on the designs and hence counterfeiting, IP theft etc., are common now-a-days. Design obfuscation can reduce RE attempt by an attacker. In this work, we propose a key based obfuscation and anonymization method for a behavioral IP. Given a behavioral VHDL description, the assignment and conditional statements are modified by incorporating random boolean operations with unique random key bits. The obfuscated VHDL …

Underground Stormwater Treatment Performance In Urban Coastal Catchments: Case Study Of Baffle Boxes In The City Of Tampa, Awet Eyob Tsegay

USF Tampa Graduate Theses and Dissertations

In coastal urban regions, underground stormwater treatment units are suitable infrastructure options because they take less space where premium land is expensive. Even then, they should be accessible and ideally small enough to fit into existing stormwater networks. Since 2003, the City of Tampa and Florida’s Department of Transportation (FDOT) have installed 47 baffle boxes into the city’s stormwater pipe networks. Baffle boxes are underground stormwater treatment structures designed to capture sediments and floating debris. Since their deployment, many challenges regarding their practical sediment capturing performance was raised by the city.

The objective of this research was to evaluate the …

Quantitative Proteomics To Support Translational Cancer Research, Melissa Hoffman

USF Tampa Graduate Theses and Dissertations

Altered signaling pathways, which are mediated by post-translational modifications and changes in protein expression levels, are key regulators of cancer initiation, progression, and therapeutic escape. Many aspects of cancer progression, including early carcinogenesis and immediate response to drug treatment, are beyond the scope of genetic profiling and non-invasive monitoring techniques. Global protein profiling of cancer cell line models, tumor tissues, and biofluids (e.g. serum or urine) using mass spectrometry-based proteomics produces novel biological insights, which support improved patient outcomes. Recent technological advances resulting in next-generation mass spectrometry instrumentation and improved bioinformatics workflows have led to unprecedented measurement reproducibility as well …

Ripple Effects Of The Belo Monte Dam: A Syndemic Approach To Addressing Health Impacts For The Downstream Community Of Gurupá, Cynthia A. Pace

USF Tampa Graduate Theses and Dissertations

This dissertation examines the public health impacts of a large dam project on a downstream community using the framework of Syndemic Theory. The particular focus is the Belo Monte Dam, located in the Brazilian Amazon, and its impact on the community of Gurupá, Pará. At the present time the Belo Monte Dam, which is nearing completion, stands out in scale as being the world’s third largest dam complex. Gurupá is a community well known (and well-studied) in the social science literature as Amazon Town. The aims of this study are to assess the pre-existing public health of Gurupá, as well …

Precise, General, And Efficient Data-Flow Analysis For Security Vetting Of Android Apps, Fengguo Wei

USF Tampa Graduate Theses and Dissertations

This dissertation presents a new approach to static analysis for security vetting of Android apps, and a general framework called Argus-SAF. Argus-SAF determines points-to information for all objects in an Android app component in a flow and context-sensitive (user-configurable) way and performs data-flow and data dependence analysis for the component. Argus-SAF also tracks inter-component communication activities. It can stitch the component-level information into the app- level information to perform intra-app or inter-app analysis. Moreover, Argus-SAF is NDK/JNI- aware and can efficiently track precise data-flow across language boundary. This dissertation shows that, (a) the aforementioned type of comprehensive app analysis is …

Survey Research In Postsecondary Chemistry Education: Measurements Of Faculty Members’ Instructional Practice And Students’ Affect, Rebecca E. Gibbons

USF Tampa Graduate Theses and Dissertations

Collection of data through survey-type measurements and analysis contributes rich, meaningful information to the chemical education research enterprise. This dissertation reports two strands of research that each contribute a “snapshot” of the state of chemical education on two different levels. The first uses survey research methods, collecting data from faculty members to learn about postsecondary chemistry education across the United States. The second uses survey instruments of student achievement emotions within the organic chemistry classroom, collecting longitudinal data to learn about the relationships of emotions with achievement over time. Both areas are of interest because chemical education research produces evidence-based …

Regulatory Methodology And Unmitigated Wetland Loss In Southwest Florida, Kathleen B. Castor

USF Tampa Graduate Theses and Dissertations

This research used Geographical Information System (GIS) data to estimate the acreage of wetland loss due to small-scale activities (taking into account exempt, permitted, and unauthorized activities) in the Southwest District of the Department of Environmental Protection (DEP) between 2006 and 2011 and compared that net loss with the unmitigated wetland net loss that DEP documented during that time for authorized activities and violations that were discovered. The comparison allowed an estimation of the extent of undocumented small-scale unmitigated wetland loss that occurred during those six years. DEP records show that 88% of non-compliance cases remain unresolved, and the net …

A Machine Learning Framework To Classify Mosquito Species From Smart-Phone Images, Mona Minakshi

USF Tampa Graduate Theses and Dissertations

Mosquito borne diseases have been a constant scourge across the globe resulting in numerous diseases with debilitating consequences, and also death. To derive trends on population of mosquitoes in an area, trained personnel lay traps, and after collecting trapped specimens, they spend hours under a microscope to inspect each specimen for identifying the actual species and logging it. This is vital, because multiple species of mosquitoes can reside in any area, and the vectors that some of them carry are not the same ones carried by others. The species identification process is naturally laborious, and imposes severe cognitive burden, since …

Evaluating Beach Water Quality And Dengue Fever Risk Factors By Satellite Remote Sensing And Artificial Neural Networks, Abdiel Elias Laureano-Rosario

USF Tampa Graduate Theses and Dissertations

Climatic variations, together with large-scale environmental forces and human development affect the quality of coastal recreational waters, creating potential risks to human health. These environmental forces, including increased temperature and precipitation, often promote specific vector-borne diseases in the Caribbean and Gulf of Mexico. Human activities affect water quality through discharges from urban areas, including nutrient and other pollutants derived from wastewater systems. Both water quality of recreational beaches and vector-borne diseases can be better managed by understanding their relationship with local environmental forces.

I evaluated how changes in vector-borne diseases and poor recreational water quality were related to specific environmental …

Dynamic Modeling Of An Advanced Wastewater Treatment Plant, Komal Rathore

USF Tampa Graduate Theses and Dissertations

Advanced wastewater treatment plants have complex biological kinetics, time variant influent rates and long processing times. The modeling and operation control of wastewater treatment plant gets complicated due to these characteristics. However, a robust operational system for a wastewater treatment plant is necessary to increase the efficiency of the plant, reduce energy cost and achieve environmental discharge limits. These discharge limits are set by the National Pollutant Discharge Elimination System (NPDES) for municipal and industrial wastewater treatment plants to limit the amount of nutrients being discharged into the aquatic systems.

This document summarizes the research to develop a supervisory operational …

Developing A Model To Predict Prevalence Of Compulsive Behavior In Individuals With Ocd, Lindsay D. Fields

USF Tampa Graduate Theses and Dissertations

The most common method of diagnosing Obsessive-Compulsive Disorder is the Yale-Brown Obsessive Compulsive Scale, which measures the severity of symptoms without regard to compulsions. However, this scale is limited to only considering the quantifiable time and energy lost to compulsions. Conversely, current systems of brain imaging arrest mobility and thus make it virtually impossible to observe compulsions at all, focusing instead on neurological responses to external stimuli. There is little research which merges both approaches, to consider the neuro-physiological effects of obsessions as well as the physical response through compulsions. As such, this research is focused on developing a model …

Understanding Agricultural-Land Conservation From The Perspective Of Landowners In Franklin County, Massachusetts, Rocio Lalanda

USF Tampa Graduate Theses and Dissertations

What motivates agricultural-land owners to use conservation easements? As these legal tools have become a popular strategy for private land conservation in the U.S., a growing body of literature is examining how and why landowners conserve their properties through conservation easements. This research project expands upon environmental, geographical and rural land development literature through a qualitative fieldwork study of 34 private, conservation landowners associated with the Franklin Land Trust, a nonprofit conservation organization in western Massachusetts. The study identifies a broad range of environmental, social, spiritual and financial motivations for agricultural-land owners to conserve their properties, and indicates that for …

Similarity Based Large Scale Malware Analysis: Techniques And Implications, Yuping Li

USF Tampa Graduate Theses and Dissertations

Malware analysis and detection continues to be one of the central battlefields for cybersecurity industry. For the desktop malware domain, we observed multiple significant ransomware attacks in the past several years, e.g., it was estimated that in 2017 the WannaCry ransomware attack affected more than 200,000 computers across 150 countries with hundreds of millions damages. Similarly, we witnessed the increased impacts of Android malware on global individuals due to the popular smartphone and IoT devices worldwide. In this dissertation, we describe similarity comparison based novel techniques that can be applied to achieve large scale desktop and Android malware analysis, and …

Emerging Non-Volatile Memory Technologies For Computing And Security, Rekha Govindaraj

USF Tampa Graduate Theses and Dissertations

With CMOS technology scaling reaching its limitations rigorous research of alternate and competent technologies is paramount to push the boundaries of computing. Spintronic and resistive memories have proven to be effective alternatives in terms of area, power and performance to CMOS because of their non-volatility, ability for logic computing and easy integration with CMOS. However, deeper investigations to understand their physical phenomenon and improve their properties such as writability, stability, reliability, endurance, uniformity with minimal device-device variations is necessary for deployment as memories in commercial applications. Application of these technologies beyond memory and logic are investigated in this thesis i.e. …

A Hybrid Dynamic Modeling Of Time-To-Event Processes And Applications, Emmanuel A. Appiah

USF Tampa Graduate Theses and Dissertations

In the survival and reliability data analysis, parametric and nonparametric methods are used to estimate the hazard/risk rate and survival functions. A parametric approach is based on the assumption that the underlying survival distribution belongs to some specific family of closed form distributions (normal, Weibull, exponential, etc.). On the other hand, a nonparametric approach is centered around the best-fitting member of a class of survival distribution functions. Moreover, the Kaplan-Meier and Nelson-Aalen type nonparametric approach do not assume either distribution class or closed-form distributions. Historically, well-known time-to-event processes are death of living specie in populations and failure of component in …

Statistical Analysis And Modeling Of Cyber Security And Health Sciences, Nawa Raj Pokhrel

USF Tampa Graduate Theses and Dissertations

Being in the era of information technology, importance and applicability of analytical statistical model an interdisciplinary setting in the modern statistics have increased significantly. Conceptually understanding the vulnerabilities in statistical perspective helps to develop the set of modern statistical models and bridges the gap between cybersecurity and abstract statistical /mathematical knowledge. In this dissertation, our primary goal is to develop series of the strong statistical model in software vulnerability in conjunction with Common Vulnerability Scoring System (CVSS) framework. In nutshell, the overall research lies at the intersection of statistical modeling, cybersecurity, and data mining. Furthermore, we generalize the model of …

Orthogonal Polynomials With Respect To The Measure Supported Over The Whole Complex Plane, Meng Yang

USF Tampa Graduate Theses and Dissertations

In chapter 1, we present some background knowledge about random matrices, Coulomb gas, orthogonal polynomials, asymptotics of planar orthogonal polynomials and the Riemann-Hilbert problem. In chapter 2, we consider the monic orthogonal polynomials, $\{P_{n,N}(z)\}_{n=0,1,\cdots},$ that satisfy the orthogonality condition,

\begin{equation}\nonumber \int_\mathbb{C}P_{n,N}(z)\overline{P_{m,N}(z)}e^{-N Q(z)}dA(z)=h_{n,N}\delta_{nm} \quad(n,m=0,1,2,\cdots), \end{equation}

where $h_{n,N}$ is a (positive) norming constant and the external potential is given by

$$Q(z)=|z|^2+ \frac{2c}{N}\log \frac{1}{|z-a|},\quad c>-1,\quad a>0.$$

The orthogonal polynomial is related to the interacting Coulomb particles with charge $+1$ for each, in the presence of an extra particle with charge $+c$ at $a.$ For $N$ large and a fixed ``c'' this …

A Behavioral Analysis Of Households Using Reclaimed Water In Irrigation: Case Of Pinellas County, Florida, Natalie Kuraya-Ziyadeh

USF Tampa Graduate Theses and Dissertations

In order to tend to the world’s dwindling freshwater supplies, sustainable alternative methods need to be integrated in order to keep up with the world’s increasing demand. Reclaimed water (RW) is one of the sustainable methods adopted by some Floridian cities such as Tampa, Tallahassee, and St. Pete that provide an alternative water source for non-potable uses. However, despite this alleviating effect RW has on freshwater supplies, it is crucial to recognize the potential harm it poses on neighboring waterbodies due to the residual contaminants it still contains, including Nitrogen (N) and Phosphorous (P). As such, studying residents’ knowledge and …

Non-Equilibrium Phase Transitions In Interacting Diffusions, Wael Al-Sawai

USF Tampa Graduate Theses and Dissertations

The theory of thermodynamic phase transitions has played a central role both in theoretical physics and in dynamical systems for several decades. One of its fundamental results is the classification of various physical models into equivalence classes with respect to the scaling behavior of solutions near the critical manifold. From that point of view, systems characterized by the same set of critical exponents are equivalent, regardless of how different the original physical models might be. For non-equilibrium phase transitions, the current theoretical framework is much less developed. In particular, an equivalent classification criterion is not available, thus requiring a specific …

Studies Aimed At The Synthesis Of Anti-Infective Agents, Ankush Kanwar

USF Tampa Graduate Theses and Dissertations

Infectious diseases continue to be a major concern worldwide. They are the second leading cause of death after heart disease. Factors such as an increasing global population, travel, urbanization, global climate change and evolution of pathogens have made infectious diseases more common. Infectious diseases, particularly neglected tropical diseases (NTDs) result in many deaths worldwide. Malaria and leishmaniasis are two common (NTDs) which affect low income countries around the globe. Low cost drugs with novel mechanism of action are required to tackle the growing resistances of parasites against current drugs used in the developing world, where most of the cases occur. …

Spatial Dynamics And Productivity Of A Gulf Of Mexico Commercial Reef Fish Fishery Following Large Scale Disturbance And Management Change, Marcy Lynn Cockrell

USF Tampa Graduate Theses and Dissertations

The Gulf of Mexico commercial reef fish fishery has experienced significant management changes and disturbance in recent years, including transitioning two major fisheries from a traditional open access system into a limited entry individual fishing quota (IFQ) system in 2007 and 2010. Also in 2010, the Deepwater Horizon oil spill (DWH) released an estimated 4.9 million barrels of oil into the Gulf (~206 million U.S. gallons), and is still the largest U.S. environmental disaster to date. Emergency fishing closures initiated shortly after the oil spill began were successful in keeping tainted seafood from reaching markets. However, effects of DWH closures …

The Association Of Size Variation In The Dental Arch To Third Molar Agenesis For A Modern Population, Devin N. Williams

USF Tampa Graduate Theses and Dissertations

The frequency with which individuals do not develop their third molars, or wisdom teeth, is increasing worldwide. This current topic of human evolution is relevant to the research of anthropologists, geneticists, dentists, and other researchers involved in the study of human dentition. Many explanations have been offered to account for the prevalence of molar agenesis including, evolutionary, environmental, and genetic theories. The purpose of this research project is to determine the frequency of third molar agenesis and investigate the relationship between third molar agenesis and maxillomandibular jaw dimensions in a sample of orthodontic patients. This research tests the hypotheses that: …

From Florida To Antarctica: Dereplication Strategies And Chemical Investigations Of Marine Organisms, Matthew A. Knestrick

USF Tampa Graduate Theses and Dissertations

In the fight against disease and illness, nature has provided mankind some of our best therapeutics in the form of secondary metabolites. The plant, fungi and animal phyla inhabiting the Earth produce diverse and unique chemistry that can be used in our fight against disease. In the growing threat of drug resistance and pathogen evolution, the field of natural products chemistry strives to explore new biological and chemical diversity sources, and develop innovative methodology to identify and isolate new chemistry faster than ever.

The dissertation herein presented is one such effort to find new, bioactive chemistry from the marine environments. …

Evaluation Of Academic And Social Engagement In A Technology-Based Collaborative Approach To Inclusive Geoscience Field Learning, Anita Marie Stone Marshall

USF Tampa Graduate Theses and Dissertations

Field learning is an important aspect of geoscience education to teach or reinforce concepts and skills, and the highly social experience of field work can improve learning outcomes, create networks to support future academic success, and promote a sense of belonging in the geosciences. However, field learning presents significant barriers to participation for students with physical disabilities. The introduction of digital data collection and communication devices into traditional field work settings has created new opportunities to expand access to field learning experiences such as remote collaboration; a method of undertaking field work through collaborative teamwork and the use of digital …

Azamacrocyclic-Based Frameworks: Syntheses And Characterizations, Chavis Andrew Stackhouse

USF Tampa Graduate Theses and Dissertations

Research in metal-organic frameworks (MOFs) has risen greatly in recent decades Owing to their unequaled potential tunability and structural diversity. MOFs may be described as crystalline structures composed of metal cations or clusters of cations, commonly referred to as secondary building units (SBUs), and custom-designed organic ligands. The variety of structural motifs, ligands, and SBUs that may be incorporated promote the attainment of essentially countless potential MOFs and application in numerous areas of interest, such as gas adsorption, catalysis, gas separation, and sensing. Further functionalization of MOF materials by means of post-synthetic modification(PSM)33–37 of metal clusters or organic ligands, constructing …

Identification Of Individuals From Ears In Real World Conditions, Earnest Eugene Hansley

USF Tampa Graduate Theses and Dissertations

A number of researchers have shown that ear recognition is a viable alternative to more common biometrics such as fingerprint, face and iris because the ear is relatively stable over time, the ear is non-invasive to capture, the ear is expressionless, and both the ear’s geometry and shape have significant variation among individuals. Researchers have used different approaches to enhance ear recognition. Some researchers have improved upon existing algorithms, some have developed algorithms from scratch to assist with recognizing individuals by ears, and some researchers have taken algorithms tried and tested for another purpose, i.e., face recognition, and applied them …

Characterization Of Nylon-12 In A Novel Additive Manufacturing Technology, And The Rheological And Spectroscopic Analysis Of Peg-Starch Matrix Interactions, Garrett Michael Craft

USF Tampa Graduate Theses and Dissertations

In this work differential scanning calorimetry, dynamic mechanical analysis, Fourier-Transformed Infrared Spectroscopy [FT-IR] and polarized light microscopy will be employed to characterize polymeric systems. The first chapter broadly covers polymer synthesis and important characterization methods.

In the second chapter, a polyamide (PA12) will be sintered via a novel additive manufacturing (AM) technology developed here at USF termed LAPS (Large Area Projection Sintering). LAPS uses extended sintering timespans to ensure complete melting and densification of the polymer powder over the entire two-dimensional area of the part’s footprint. Further, it allows for the printed layer to crystallize and shrink in its entirety …