Physical Sciences and Mathematics Commons^™

Lake Mead National Recreation Area Monitoring And Evaluation Of Sensitive Wildlife: Quarterly Progress Report, Period Ending June 30, 2009, Margaret N. Rees

Wildlife Monitoring

Project 1. Relict Leopard Frog Monitoring, Management, and Research

• All milestones and deliverables associated with the MSHCP project are on schedule
• Translocation field season has been completed
• Spring monitoring surveys have been completed
• Dana Drake, UNLV Research Assistant, has left the project

Project 2. Bald Eagle Winter Monitoring and Evaluation

• All MSHCP milestones and deliverables are on schedule

Project 3. Peregrine Falcon Monitoring and Evaluation

• The MSHCP projects are on schedule for all milestones and deliverables
• Peregrine falcon monitoring of breeding activities are ongoing and are nearing completion
• Method testing of active survey methodology has been completed
• Stacy Crowe was …

Nevada Interagency Volunteer Program: Helping Hands Across Public Lands – Phase Ii: Quarterly Progress Report, Period Covering April 1, 2009 – June 30, 2009, Margaret N. Rees

Get Outdoors Nevada

• The number of records in the volunteer database increased by 1,269, a 10% increase over last quarter. The database currently contains 6,226 records.
• Website activity increased, recording an average of 81,903 hits per month, an increase of 20 % from last quarter, with an average of 5,814 pages viewed per month.
• The IVP team surveyed agency staff to determine operational volunteer recruitment needs.
• The IVP team reported their successes, lessons learned, and plans for the future during their assessment by the SNAP board.
• The second annual volunteer bus tour was successfully conducted.
• Preparations for the volunteer recognition banquet began.

Land Conservation And Land Use In New England: Trends, Challenges & Opportunities, Amanda Loomis, Tom Devine, Andrea Small, Brittany Howard, Brett Richardson, Stephanie Dulac

Land Conservation

Sprawling development patterns accelerated across the New England landscape in the last three decades and consumed the region‘s forests, farms, and open spaces at an unprecedented rate. New England‘ers in all six states formed land trusts, supported statewide conservation organizations, and collaborated with state and federal partners to protect some of their most-prized recreation lands, wildlife habitats, and working lands. The current economic recession has slowed development pressures across the region and offers an opportunity to build on recent successes. The time is right to plan a coordinated New England conservation strategy that protects and links the region‘s natural assets. …

Nonparametric Population Average Models: Deriving The Form Of Approximate Population Average Models Estimated Using Generalized Estimating Equations, Alan E. Hubbard, Mark J. Van Der Laan

U.C. Berkeley Division of Biostatistics Working Paper Series

For estimating regressions for repeated measures outcome data, a popular choice is the population average models estimated by generalized estimating equations (GEE). We review in this report the derivation of the robust inference (sandwich-type estimator of the standard error). In addition, we present formally how the approximation of a misspecified working population average model relates to the true model and in turn how to interpret the results of such a misspecified model.

Caching And Visualizing Statistical Analyses, Roger D. Peng, Duncan Temple Lang

Johns Hopkins University, Dept. of Biostatistics Working Papers

We present the cacher and CodeDepends packages for R, which provide tools for (1) caching and analyzing the code for statistical analyses and (2) distributing these analyses to others in an efficient manner over the web. The cacher package takes objects created by evaluating R expressions and stores them in key-value databases. These databases of cached objects can subsequently be assembled into “cache packages” for distribution over the web. The cacher package also provides tools to help readers examine the data and code in a statistical analysis and reproduce, modify, or improve upon the results. In addition, readers can easily …

A Multilevel Model To Address Batch Effects In Copy Number Estimation Using Snp Arrays, Robert B. Scharpf, Ingo Ruczinski, Benilton Carvalho, Betty Doan, Aravinda Chakravarti, Rafael A. Irizarry

Johns Hopkins University, Dept. of Biostatistics Working Papers

Submicroscopic changes in chromosomal DNA copy number dosage are common and have been implicated in many heritable diseases and cancers. Recent high-throughput technologies have a resolution that permits the detection of segmental changes in DNA copy number that span thousands of basepairs across the genome. Genome-wide association studies (GWAS) may simultaneously screen for copy number-phenotype and SNP-phenotype associations as part of the analytic strategy. However, genome-wide array analyses are particularly susceptible to batch effects as the logistics of preparing DNA and processing thousands of arrays often involves multiple laboratories and technicians, or changes over calendar time to the reagents and …

A Multilevel Model To Address Batch Effects In Copy Number Using Snp Arrays, Robert B. Scharpf, Ingo Ruczinski, Benilton Carvalho, Betty Doan, Aravinda Chakravarti, Rafael A. Irizarry

Johns Hopkins University, Dept. of Biostatistics Working Papers

Submicroscopic changes in chromosomal DNA copy number dosage are common and have been implicated in many heritable diseases and cancers. Recent high-throughput technologies have a resolution that permits the detection of segmental changes in DNA copy number that span thousands of basepairs across the genome. Genome-wide association studies (GWAS) may simultaneously screen for copy number-phenotype and SNP-phenotype associations as part of the analytic strategy. However, genome-wide array analyses are particularly susceptible to batch effects as the logistics of preparing DNA and processing thousands of arrays often involves multiple laboratories and technicians, or changes over calendar time to the reagents and …

Preparation Of 5-Bromo-2-Naphthol: The Use Of A Sulfonic Acid As A Protecting And Activating Group, Christopher J. Abelt

Arts & Sciences Articles

The preparation of 5-bromo-2-naphthol (4) in three steps from 5-amino-2-naphthol (1) is described. A sulfonic acid group is introduced at the 1-position as an activating and protecting group for the Sandmeyer reaction. The sulfonate group allows for the use of only water and sulfuric acid as solvents. The sulfonic acid is introduced with three equivalents of sulfuric acid, and it is removed in 20% aq. sulfuric acid.

Pamela Satellite Data As A Signal Of Non-Thermal Wino Lsp Dark Matter, Scott Watson, Gordon Kane, Ran Lu

Physics - All Scholarship

Satellite data is accumulating that suggests and constrains dark matter physics. We argue there is a very well motivated theoretical preexisting framework consistent with dark matter annihilation being observed by the PAMELA satellite detector. The dark matter is (mainly) the neutral W boson superpartner, the wino with mass below 200 GeV. Using the program GALPROP we study the annihilation products and backgrounds together. Antimatter and gammas from annihilating winos contribute below this energy. We explain why PAMELA data does not imply no antiproton signal was observed by PAMELA or earlier experiments, and explain why the antiproton analysis was misunderstood by …

Location-Based Services For Emergency Management: A Multi-Stakeholder Perspective, Anas Aloudat, K. Michael, Roba Abbas

Associate Professor Katina Michael

This paper investigates the deployment of locationbased services for nationwide emergency management by focusing on the perspectives of two stakeholders, government and end-users, in the cellular mobile phone value chain. The data collected for the study came from a single in-depth interview and open comments in a preliminary end-user survey. The themes presented have been categorised using a qualitative analysis. The findings indicate that although governments and end-users believe that location-based services have the potential to aid people in emergencies, there are several major disagreements over the proposed deployment. This paper is an attempt to help determine the underlying motivations …

The Current State Of Commercial Location-Based Service Offerings In Australia, Roba Abbas, K. Michael, M.G. Michael, Anas Aloudat

Associate Professor Katina Michael

Location-based services (LBS) provide geographic data for a variety of purposes, and through numerous devices such as mobile phones, GPS navigation systems, palm pilots and increasingly desktop computers. Presently, there is scant information relating to the current state of the LBS market, specifically location-based service applications in Australia. This study makes use of usability context analyses to examine Australia’s three leading telecommunications operators- Telstra, Optus and Vodafone- with a view to providing an overview of the types of services and solutions presently offered and targeted at the consumer, business and emergency segments. There are two units of analysis (i) the …

Triangle Network Motifs Predict Complexes By Complementing High-Error Interactomes With Structural Information, Bill Andreopoulos, Christof Winter, Dirk Labudde, Michael Schroeder

Faculty Publications, Computer Science

BackgroundA lot of high-throughput studies produce protein-protein interaction networks (PPINs) with many errors and missing information. Even for genome-wide approaches, there is often a low overlap between PPINs produced by different studies. Second-level neighbors separated by two protein-protein interactions (PPIs) were previously used for predicting protein function and finding complexes in high-error PPINs. We retrieve second level neighbors in PPINs, and complement these with structural domain-domain interactions (SDDIs) representing binding evidence on proteins, forming PPI-SDDI-PPI triangles.ResultsWe find low overlap between PPINs, SDDIs and known complexes, all well below 10%. We evaluate the overlap of PPI-SDDI-PPI triangles with known complexes from …

Location-Based Services For Emergency Management: A Multi-Stakeholder Perspective, Anas Aloudat, K. Michael, Roba Abbas

Dr Roba Abbas

This paper investigates the deployment of locationbased services for nationwide emergency management by focusing on the perspectives of two stakeholders, government and end-users, in the cellular mobile phone value chain. The data collected for the study came from a single in-depth interview and open comments in a preliminary end-user survey. The themes presented have been categorised using a qualitative analysis. The findings indicate that although governments and end-users believe that location-based services have the potential to aid people in emergencies, there are several major disagreements over the proposed deployment. This paper is an attempt to help determine the underlying motivations …

The Current State Of Commercial Location-Based Service Offerings In Australia, Roba Abbas, K. Michael, M.G. Michael, Anas Aloudat

M. G. Michael

Location-based services (LBS) provide geographic data for a variety of purposes, and through numerous devices such as mobile phones, GPS navigation systems, palm pilots and increasingly desktop computers. Presently, there is scant information relating to the current state of the LBS market, specifically location-based service applications in Australia. This study makes use of usability context analyses to examine Australia’s three leading telecommunications operators- Telstra, Optus and Vodafone- with a view to providing an overview of the types of services and solutions presently offered and targeted at the consumer, business and emergency segments. There are two units of analysis (i) the …

Triangle Network Motifs Predict Complexes By Complementing High-Error Interactomes With Structural Information, Bill Andreopoulos, Christof Winter, Dirk Labudde, Michael Schroeder

William B. Andreopoulos

Parts Of The Whole: Approaching Education As A System, Dorothy Wallace

Numeracy

An educational system is a highly coupled complex system of inputs, outputs, sensors and actuators. Using an engineering perspective, this column begins the process of naming and categorizing parts of the system. It then focuses on teachers as one part of a large system, and analyzes the forces that influence how teachers work, and that draw or repel individuals to a teaching career. The growing shortage of qualified teachers can be explained by properties of the system as a whole that determine the context in which teachers do their job.

Review Of Super Crunchers By Ian Ayers, Eric Gaze

Numeracy

Ayers, I. Super Crunchers: Why Thinking-by-Numbers Is the New Way to be Smart. (Bantam Dell Publishing Group, 2007). 272 pp. Hard cover $25 ISBN 978-0-553-80540-6.

Super Crunchers tells the story of how analyzing data is changing the ways in which decisions are made. We in the National Numeracy Network make a case for the importance of quantitative literacy by referring to how much quantitative information is now available to each of us: “a world awash in numbers.” Ian Ayres zeroes in on the people who are making a living crunching all of these data. From the seemingly innocuous (how …

Review Of Stat-Spotting: A Field Guide To Identifying Dubious Data By Joel Best, Joe Swingle

Numeracy

Best, Joel. Stat-Spotting: A Field Guide to Identifying Dubious Data. (Berkeley: University of California Press, 2008) 144 pp. $19.95. ISBN 1-978-0-520-25746-7.

Stat-Spotting is a practical, do-it-yourself manual for detecting questionable claims reported in the media. Using examples drawn mostly from mass media sources, Stat-Spotting provides readers with a number of useful tips for identifying potentially problematic statistics. The author’s skillful analyses and explanations presented in clear and concise prose make Stat-Spotting an ideal guide for anyone who reads a newspaper, watches television, or surfs the Web. In short, everyone.

Review Of Calculation Vs. Context: Quantitative Literacy And Its Implications For Teacher Education By Bernard L. Madison And Lynn Arthur Steen (Editors), Maura B. Mast

Numeracy

Madison, Bernard L. and Steen, Lynn Arthur (Eds.). Calculation vs. Context: Quantitative Literacy and Its Implications for Teacher Education. (Washington, DC: Mathematical Association of America, 2009). 197 pp. Softcover. ISBN 978-0-88385-908-7. Available free on the MAA website at http://www.maa.org/ql/calcvscontext.html

The papers in Calculation vs. Context discuss the role of quantitative literacy in the K-12 curriculum and in teacher education. The papers present a varied set of perspectives and address three themes: the changing environment of education in American society; the challenges, and the necessity, of preparing teachers to teach quantitative literacy and of including quantitative literacy in the K-12 education; …

Engaging Math-Avoidant College Students, M. Paul Latiolais, Wendi Laurence

Numeracy

This paper is an informal, personal account of how we, as two college teachers, became interested in math anxiety, decided to explore it amongst students at our institution in order to inform our teaching, and became convinced that the massive problem is math avoidance. We tried discussion groups, but few students attended, although those that did made useful suggestions. Thus informed, we designed an innovative course, Confronting College Mathematics as a Humanities course with the possibility of credit toward the math requirement, but it was undersubscribed in its first offering and had to be canceled. How can we get college …

Measuring Resource Inequality: The Gini Coefficient, Michael T. Catalano, Tanya L. Leise, Thomas J. Pfaff

Numeracy

This paper stems from work done by the authors at the Mathematics for Social Justice Workshop held in June of 2007 at Middlebury College. We provide a description of the Gini coefficient and some discussion of how it can be used to promote quantitative literacy skills in mathematics courses. The Gini Coefficient was introduced in 1921 by Italian statistician Corrado Gini as a measure of inequality. It is defined as twice the area between two curves. One, the Lorenz curve for a given population with respect to a given resource, represents the cumulative percentage of the resource as a function …

Quantitative Literacy Assessments: An Introduction To Testing Tests, Dorothy Wallace, Kim Rheinlander, Steven Woloshin, Lisa Schwartz

Numeracy

This paper describes how professional evaluators construct assessment instruments that work properly to measure the right thing. Constructing an assessment tool begins with getting feedback from relevant experts on the content of questions. The tool is developed and refined through comparison with existing instruments, focus groups and cognitive interviews. The final instrument is formally tested for content validity, usability, reliability and construct validity through a variety of statistical measures. This process of construction is illustrated by two examples relevant to quantitative literacy: the Medical Data Interpretation Test and the Math Attitudes Survey.

Integration With Writing Programs: A Strategy For Quantitative Reasoning Program Development, Nathan D. Grawe, Carol A. Rutz

Numeracy

As an inherently interdisciplinary endeavor, quantitative reasoning (QR) risks falling through the cracks between the traditional “silos” of higher education. This article describes one strategy for developing a truly cross-campus QR initiative: leverage the existing structures of campus writing programs by placing QR in the context of argument. We first describe the integration of Carleton College’s Quantitative Inquiry, Reasoning, and Knowledge initiative with the Writing Program. Based on our experience, we argue that such an approach leads to four benefits: it reflects important aspects of QR often overlooked by other approaches; it defuses the commonly raised objection that QR is …

Assessing Quantitative Reasoning, Corrine H. Taylor

Numeracy

No abstract provided.

The Spectral Game: Leveraging Open Data And Crowdsourcing For Education, Andrew Lang, Jean-Claude Bradley, Robert J. Lancashire, Anthony J. Williams

College of Science and Engineering Faculty Research and Scholarship

We report on the implementation of the Spectral Game, a web-based game where players try to match molecules to various forms of interactive spectra including 1D/2D NMR, Mass Spectrometry and Infrared spectra. Each correct selection earns the player one point and play continues until the player supplies an incorrect answer. The game is usually played using a web browser interface, although a version has been developed in the virtual 3D environment of Second Life. Spectra uploaded as Open Data to ChemSpider in JCAMP-DX format are used for the problem sets together with structures extracted from the website. The spectra are …

An Exchange-Coulomb Model Potential Energy Surface For The Ne-Co Interaction. I. Calculation Of Ne-Co Van Der Waals Spectra, Ashok K. Dham, Frederick R. W. Mccourt, William J. Meath, George C. Mcbane

Peer Reviewed Articles

Exchange-Coulomb model potential energy surfaces have been developed for the Ne–CO interaction. The initial model is a three-dimensional potential energy surface based upon computed Heitler–London interaction energies and literature results for the long-range induction and dispersion energies, all as functions of interspecies distance, the orientation of CO relative to the interspecies axis, and the bond length of the CO molecule. Both a rigid-rotor model potential energy surface, obtained by setting the CO bond length equal to its experimental spectroscopic equilibrium value, and a vibrationally averaged model potential energy surface, obtained by averaging the stretching dependence over the ground vibrational motion …

Lecture 5, Shuangge Ma

Shuangge Ma

No abstract provided.

Fuel Loads, Fire Severity, And Tree Mortality In Florida Keys Pine Forests, Jay Sah, Mike S. Ross, Danielle Ogarcak, Jim R. Snyder

North American Forest Ecology Workshop

In fire dependent forested ecosystems, fire managers are greatly interested in predicting the consequences of their management-oriented prescribed burnings on post-fire tree mortality. While fire intensity is believed to be a strong predictor of tree mortality, fire behavior itself largely depends on fuel characteristics, including both their structure and spatial distribution. We examined the type and distribution of fuels, their effects on fire behavior, and the effects of fire on tree mortality in slash pine forests in the Florida Keys. We conducted a burning experiment in six blocks, and burned eleven plots, three in winter and eight in summer, over …

Overstory Dynamics In An Uncut Pine-Hardwood Stand: Lessons From Seventy Years Of Passive Management, Don Bragg, Michael G. Shelton

North American Forest Ecology Workshop

Long-term demonstration projects on experimental forests can be adapted from their original goals to provide insights into contemporary research questions. For instance, a 32.4-hectare cutover parcel on the Crossett Experimental Forest, the eventual Reynolds Research Natural Area (RRNA), was reserved in 1936 to act as a control for more intensively managed study areas. Over the last 70+ years, the RRNA has been allow to develop under 'natural' conditions that include no harvesting or other human interventions-with the notable exception of fire control. From 1937 until the most recent measurement in 2007, overall stand basal increased from about 20 to 36 …

What Drives Decomposition Rates Of Coarse Woody Debris (Cwd)?, Steffen Herrmann, Jurgen Bauhus

North American Forest Ecology Workshop

Currently increasing efforts are made to manage CWD as a habitat component and a carbon store in forest ecosystems. For this a basic understanding of patterns and rates of dead wood decomposition in different forests is crucial. The decomposition rate of CWD is mainly dependent on climatic (wood temperature, wood moisture) and substrate specific (tree species, decay stage, diameter) variables. Here, we analysed the influence of these factors using a combined approach. 1) We assessed the decay rate of Fagus sylvatica, Picea abies and Pinus sylvestris in three diameter classes (10-20 cm, 20-40 cm, >40 cm) along a climatic/altitudinal gradient …