Physical Sciences and Mathematics Commons^™

Genetic Structure Of East Antarctic Populations Of The Moss Ceratodon Purpureus, L. J. Clarke, D. J. Ayre, Sharon A. Robinson

Sharon Robinson

The capacity of the polar flora to adapt is of increasing concern given current and predicted environmental change in these regions. Previous genetic studies of Antarctic mosses have been of limited value due to a lack of variation in the markers or non-specificity of the methods used. We examined the power of five microsatellite loci developed for the cosmopolitan moss Ceratodon purpureus to detect genetically distinct clones and infer the distribution of clones within and among populations from the Windmill Islands, East Antarctica. Our microsatellite data suggest extraordinarily high levels of variation reported in RAPD studies were artificially elevated by …

Two Cys Or Not Two Cys? That Is The Question; Alternative Oxidase In The Thermogenic Plant Sacred Lotus, Nicole M. Grant, Yoshihiko Onda, Yusuke Kakizaki, Kkikukatsu Ito, Jennifer R. Watling, Sharon A. Robinson

Sharon Robinson

Sacred lotus (Nelumbo nucifera) regulates temperature in its floral chamber to 32°C to 35°C across ambient temperatures of 8°C to 40°C with heating achieved through high alternative pathway fluxes. In most alternative oxidase (AOX) isoforms, two cysteine residues, Cys1 and Cys2, are highly conserved and play a role in posttranslational regulation of AOX. Further control occurs via interaction of reduced Cys1 with α-keto acids, such as pyruvate. Here, we report on the in vitro regulation of AOX isolated from thermogenic receptacle tissues of sacred lotus. AOX protein was mostly present in the reduced form, and only a small fraction could …

The Surface Relaxation And Band Structure Of Mo(112), Ning Wu, Ya. B. Losovyj, Zhaoxian Yu, Renat F. Sabirianov, Wai-Ning Mei, N. Lozova, J. A. Colón Santana, Peter Dowben

Physics Faculty Publications

The experimental and theoretical surface band structures of Mo(112) are compared. This surface band structure mapping is presented with corrections included for the lattice relaxation of the Mo(112) surface. Quantitative low energy electron diffraction (LEED) has been used to determine the details of the Mo(112) surface structure. The first layer contraction is 14.9% by LEED intensity versus voltage analysis and is in general agreement with the 17.6% contraction found from total surface energy optimization. The electronic band structure is mapped out along ¯– ¯ X and ¯–¯Y of the surface Brillouin zone (SBZ). There is strong evidence of electron–phonon coupling …

Microwave-Assisted Synthesis Of Zno Micro-Javelins, Suresh Pillai, Declan Mccormack, John M. Kelly, Sibu C. Padmanabhan

Articles

The microwave (MW)-assisted formation of ZnO micro-javelins from zinc nitrate and urea in aqueous solution is described. The particles (named as ‘micro-javelins’ because of their high aspect ratio and needle-like tips) grow hexagonally with well-defined facets in the h0110i direction and pointed tips in (0001) direction. Powder X-ray diffraction patterns show the appearance of a strikingly dominant (1000) orientation. Scanning electron microscopy (SEM) and transmission electron microscopy (TEM) investigations reveal the morphological evolution of these hexagonal ZnO particles with time. The effect of precursor concentrations, counterion type andMWirradiation power and their consequent influence on pH and Zn2+ ion concentration are …

Comparing Experts And Novices In Solving Electrical Circuit Problems With The Help Of Eye-Tracking, David Rosengrant, Colin Thomson, Taha Mzoughi

Faculty Articles

In order to help introductory physics students understand and learn to solve problems with circuits, we must first understand how they differ from experts. This preliminary study focuses on problem-solving dealing with electrical circuits. We investigate difficulties novices have with circuits and compare their work with those of experts. We incorporate the use of an eye-tracker to investigate any possible differences or similarities on how experts and novices solve electrical circuit problems. Our results show similarities in gaze patterns among all subjects on the components of the circuit. We further found that experts would look back at the circuit while …

A Comparison Of Frequentist And Bayesian Approaches To The Estimation Of Long-Stay Per-Diems, Jeff Hatcher, Jason M. Sutherland

Dartmouth Scholarship

Within many diagnosis related group (DRG) systems, there is recognition that a single cost weight per DRG is not suitable, and that cost weights should take into account extremely lengthy hospital stays. Long lengths of stay are considered to be due to factors largely beyond the control of the hospital, and a single weight per DRG would potentially place hospitals under financial risk.

Within Canada's acute-care, inpatient grouping methodology - Case Mix Groups (CMG+) - long-stay episodes represent approximately 4.5% of all discharges. Within a CMG (analogous to DRG), the cost weight assigned to long-stay cases consists of the typical …

Correlating Molecular Phylogeny With Venom Apparatus Occurrence In Panamic Auger Snails (Terebridae), Mandë Holford, Nicolas Puillandre, Maria Vittoria Modica, Maren Watkins, Rachel Collin, Eldredge Bermingham, Baldomero M. Olivera

Publications and Research

Central to the discovery of neuroactive compounds produced by predatory marine snails of the superfamily Conoidea (cone snails, terebrids, and turrids) is identifying those species with a venom apparatus. Previous analyses of western Pacific terebrid specimens has shown that some Terebridae groups have secondarily lost their venom apparatus. In order to efficiently characterize terebrid toxins, it is essential to devise a key for identifying which species have a venom apparatus. The findings presented here integrate molecular phylogeny and the evolution of character traits to infer the presence or absence of the venom apparatus in the Terebridae. Using a combined dataset …

النتائج المالية لشهادة التسجيل للحصول على الآيزو في الشركات الصناعية المساهمة العامة, Philadelphia University

Philadelphia University, Jordan

No abstract provided.

Lot Quality Assurance Sampling (Lqas) And The Mozambique Malaria Indicator Surveys, Caitlin Biedron, Marcello Pagano, Bethany L. Hedt, Albert Kilian, Amy Ratcliffe, Samuel Mabunda, Joseph J. Valadez

Harvard University Biostatistics Working Paper Series

No abstract provided.

Damping And Decoherence Of A Nanomechanical Resonator Due To A Few Two-Level Systems, Laura G. Remus, Miles P. Blencowe, Yukihiro Tanaka

Dartmouth Scholarship

We consider a quantum model of a nanomechanical flexing beam resonator interacting with a bath comprising a few damped tunneling two-level systems. In contrast with a resonator interacting bilinearly with an ohmic free oscillator bath (modeling clamping loss, for example), the mechanical resonator damping is amplitude dependent, while the decoherence of quantum superpositions of mechanical position states depends only weakly on their spatial separation.

Biological Control Of Purple Loosestrife (Lythrum Salicaria): Factors Affecting Galerucella Pusilla And Galerucella Calmariensis Establishment In Tidal Areas, Lynda Kathryn Moore

Dissertations and Theses

Galerucella pusilla and G. calmariensis have provided successful biological control of purple loosestrife (Lythrum salicaria L.) in non-tidal areas but only marginal control in areas of tidal influence. While a previous study identified mechanical scour by tidal waters as the main cause of establishment failure, purple loosestrife stem density explained more than 80% of the variability in presence and absence of Galerucella at my study sites in the Columbia River Estuary. A logistic regression model using purple loosestrife stem density, elevation, and their interaction as predictors accurately predicted 92.5% of Galerucella presence or absence observations of a test data …

Observations Of Heterogeneous Reactions Between Asian Pollution And Mineral Dust Over The Eastern North Pacific During Intex-B, Cameron Mcnaughton, A D. Clarke, V Kapustin, Yohei Shinozuka, S G. Howell, B E. Anderson, E L. Winstead, Jack E. Dibb, Eric Scheuer, Ronald C. Cohen, Paul J. Wooldridge, A E. Perring, L Gregory Huey, S Kim, Jose L. Jimenez, E J. Dunlea, P F. Decarlo, Paul Wennberg, John D. Crounse, Andrew Weinheimer, F Flocke

Earth Sciences

In-situ airborne measurements of trace gases, aerosol size distributions, chemistry and optical properties were conducted over Mexico and the Eastern North Pacific during MILAGRO and INTEX-B. Heterogeneous reactions between secondary aerosol precursor gases and mineral dust lead to sequestration of sulfur, nitrogen and chlorine in the supermicrometer particulate size range.

Simultaneous measurements of aerosol size distributions and weak-acid soluble calcium result in an estimate of 11 wt% of CaCO3 for Asian dust. During transport across the North Pacific, ∼5ĝ€ "30% of the CaCO3 is converted to CaSO4 or Ca(NO 3)2 with an additional ∼4% consumed through reactions with HCl. The …

Fusion Algebras & Accidental Trigonometry, Christopher D. Goff

College of the Pacific Faculty Presentations

No abstract provided.

Modeling Multilevel Sleep Transitional Data Via Poisson Log-Linear Multilevel Models, Bruce J. Swihart, Brian Caffo, Ciprian Crainiceanu, Naresh M. Punjabi

Johns Hopkins University, Dept. of Biostatistics Working Papers

This paper proposes Poisson log-linear multilevel models to investigate population variability in sleep state transition rates. We specifically propose a Bayesian Poisson regression model that is more flexible, scalable to larger studies, and easily fit than other attempts in the literature. We further use hierarchical random effects to account for pairings of individuals and repeated measures within those individuals, as comparing diseased to non-diseased subjects while minimizing bias is of epidemiologic importance. We estimate essentially non-parametric piecewise constant hazards and smooth them, and allow for time varying covariates and segment of the night comparisons. The Bayesian Poisson regression is justified …

Area Contraction For Harmonic Automorphisms Of The Disk, Ngin-Tee Koh, Leonid V. Kovalev

Mathematics - All Scholarship

A harmonic self-homeomorphism of a disk does not increase the area of any concentric disk.

Bayesian Functional Data Analysis Using Winbugs, Ciprian M. Crainiceanu, A. Jeffrey Goldsmith

Johns Hopkins University, Dept. of Biostatistics Working Papers

We provide user friendly software for Bayesian analysis of Functional Data Models using WinBUGS 1.4. The excellent properties of Bayesian analysis in this context are due to: 1) dimensionality reduction, which leads to low dimensional projection bases; 2)the mixed model representation of functional models, which provides a modular approach to model extension; and 3) the orthogonality of the principal component bases, which contributes to excellent chain convergence and mixing properties. Our paper provides one more, essential, reason for using Bayesian analysis for Functional models: the existence of software.

Katana: A Hot Patching Framework For Elf Executables, Ashwin Ramaswamy, Sergey Bratus, Michael E. Locasto, Sean W. Smith

Computer Science Technical Reports

Despite advances in software modularity, security, and reliability, offline patching remains the predominant form of updating or protecting commodity software. Unfortunately, the mechanics of hot patching (the process of upgrading a program while it executes) remain understudied, even though such a capability offers practical benefits for both consumer and mission-critical systems. A reliable hot patching procedure would serve particularly well by reducing the downtime necessary for critical functionality or security upgrades. Yet, hot patching also carries the risk -- real or perceived -- of leaving the system in an inconsistent state, which leads many owners to forego its benefits as …

Nonlinear Optical Dynamics In Nonideal Gases Of Interacting Colloidal Nanoparticles, Ramy El-Ganainy, Demetrios N. Christodoulides, E. M. Wright, W. M. Lee, K. Dholakia

Ramy El-Ganainy

We show that many-body effects in stabilized nanocolloidal suspensions can have a profound effect on their optical nonlinearity. By considering the screened Coulomb repulsions between nanoparticles, we find that the nonlinear optical behavior of these colloids can range from polynomial to exponential depending on their composition and chemistry. The dynamics and stability properties of optical beams propagating in such nonideal gas environments of interacting colloidal particles are investigated. Our analysis provides a theoretical foundation for understanding the recently observed super-Kerr nonlinear optical response of such systems.

Diet Composition Of Swordfish, Xiphias Gladius, Within The Straits Of Florida, Amy Marie Heemsoth

HCNSO Student Theses and Dissertations

A diet study of swordfish, Xiphias gladius, was conducted in the Straits of Florida from April 2007 to December 2008. The stomachs of 131 swordfish were analyzed. Thirteen species of teleosts, three species of cephalopods, and one species of crustacean were observed in the diet. Cephalopods dominated the swordfish diet by weight (73.38%), number (69.90%), and occurrence (80.91%) and ranked highest in importance in the diet when calculating the index of relative importance (IRI). Teleosts followed by weight (25.16%), number (26.34%), occurrence (68.18%), and IRI (3,510.97). The prey species with the greatest dietary importance was Illex sp followed by …

White River Forum Ii: Second Annual Meeting Of The White River Forum, John Havel, Kenneth Steele

Technical Reports

This second annual meeting of the White River Forum is proof of widespread interest in the water quality of the Upper White River watershed. The participation of numerous elected officials, state and federal agencies, universities, businesses, and local citizens indicates that interest in understanding policy issues crosses political boundaries and occupations.

Classifying Sentence-Based Summaries Of Web Documents, Yiu-Kai D. Ng, Maria Soledad Pera

Faculty Publications

Text classification categorizes Web documents in large collections into predefined classes based on their contents. Unfortunately, the classification process can be time-consuming and users are still required to spend considerable amount of time scanning through the classified Web documents to identify the ones that satisfy their information needs. In solving this problem, we first introduce CorSum, an extractive single-document summarization approach, which is simple and effective in performing the summarization task, since it only relies on word similarity to generate high-quality summaries. Hereafter, we train a Naïve Bayes classifier on CorSum-generated summaries and verify the classification accuracy using the summaries …

Smooth Potential Energy Surface For Cavitation, Dispersion, And Repulsion Free Energies In Polarizable Continuum Model, Yali Wang, Hui Li

Hui Li Publications

The fixed points with variable areas [FIXPVA] tessellation scheme is used to obtain smooth potential energy surfaces for the cavitation G_cav, dispersion G_dis, and repulsion G_rep free energies in the polarizable continuum model (PCM). It is shown that FIXPVA can reproduce the standard GEPOL results to within 1 kcal/mol.

Coupled Collaborative In-Class Activities And Individual Follow-Up Homework Promote Interactive Engagement And Improve Student Learning Outcomes In A College-Level Environmental Geology Course, Leilani Arthurs, Alexis Templeton

Department of Earth and Atmospheric Sciences: Faculty Publications

Interactive engagement pedagogies that emerge from a constructivist model of teaching and learning are often a challenge to implement in larger classes for a number of reasons including the physical layout of the classroom (e.g. fixed chairs in an amphitheater-style room), the logistics of organizing a large number of students into small peer-learning groups, the ability of a single instructor to personally interact with each of many small groups, and the design of small group activities that are engaging and facilitate student learning. For a large introductory-level Environmental Geology college course, 5 coupled collaborative class-long in-class activities and individual follow-up …

Theory Of Transient Streaming Potentials Associated With Axial-Symmetric Flow In Unconfined Aquifers, Bwalya Malama, Kristopher L. Kuhlman, André Revil

Natural Resources Management and Environmental Sciences

We present a semi-analytical solution for the transient streaming potential response of an unconfined aquifer to continuous constant rate pumping. We assume that flow occurs without leakage from the unit below a transverse anisotropic aquifer and neglect flow in the unsaturated zone by treating the water-table as a moving material boundary. In the development of the solution to the streaming potential problem, we impose insulating boundary conditions at land surface and the lower boundary of the lower confining unit. We solve the problem exactly in the double Laplace—Hankel transform space and obtain the inverse transforms numerically. The solution is used …

Effects Of Composted And Raw Manure And Ammonium Sulfate Applications On The Chemical Properties Of The Soils At Chorro Creek Ranch, San Luis Obispo, Ca., Renee Nall,, Craig Stubler, Christopher Appel, Tanner Campbell, Jose Gomez, Nathan Lurie, Russell Morgan, J. J. Scurich

Earth and Soil Sciences

The majority of agricultural systems, especially large-scale, require inputs of nutrients. In addition, many large scale dairies produce vast quantities of waste that can be potentially recycled as nutrients. This study was conducted to determine the differences in properties of soils amended with manure, compost, and fertilizer, and to assess implications of using animal waste products for forage crop fertilization. Forage crops, wheat, barley, and oat mix have been grown on the Chorro Creek Ranch part of Cal Poly farmland, for 15 years. Ammonium sulfate fertilizer has been applied at a rate of 200 lbs/acre/year for the past 4 years. …

Population Coding Of Tone Stimuli In Auditory Cortex: Dynamic Rate Vector Analysis, Peter Bartho, Carina Curto, Artur Luczak, Stephan L. Marguet, Kenneth D. Harris

Department of Mathematics: Faculty Publications

Neural representations of even temporally unstructured stimuli can show complex temporal dynamics. In many systems, neuronal population codes show “progressive differentiation,” whereby population responses to different stimuli grow further apart during a stimulus presentation. Here we analyzed the response of auditory cortical populations in rats to extended tones. At onset (up to 300 ms), tone responses involved strong excitation of a large number of neurons; during sustained responses (after 500 ms) overall firing rate decreased, but most cells still showed a statistically significant difference in firing rate. Population vector trajectories evoked by different tone frequencies expanded rapidly along an initially …

Jmasm29: Dominance Analysis Of Independent Data (Fortran), Du Feng, Normal Cliff

Journal of Modern Applied Statistical Methods

A Fortran 77 program is provided for an ordinal dominance analysis of independent two-group comparisons. The program calculates the ordinal statistic, d, and statistical inferences about δ. The source codes and an executable file are available at http://www.depts.ttu.edu/hdfs/feng.php.

Radiation Force Of Scalar And Electromagnetic Twisted Gaussian Schell-Model Beams, Chengliang Zhao, Yangjian Cai, Olga Korotkova

Physics Articles and Papers

Radiation force of a focused scalar twisted Gaussian Schell-model (TGSM) beam on a Rayleigh dielectric sphere is investigated. It is found that the twist phase affects the radiation force and by raising the absolute value of the twist factor it is possible to increase both transverse and longitudinal trapping ranges at the real focus where the maximum on-axis intensity is located. Numerical calculations of radiation forces induced by a focused electromagnetic TGSM beam on a Rayleigh dielectric sphere are carried out. It is found that radiation force is closely related to the twist phase, degree of polarization and correlation factors …

The Lick Agn Monitoring Project: Broad-Line Region Radii And Black Hole Masses From Reverberation Mapping Of HSs, Misty C. Bentz, Jonelle L. Walsh, Aaron J. Barth, Nairn Baliber, Vardha N. Bennert, Gabriela Canalizo, Alexei V. Filippenko, Mohan Ganeshalingam, Elinor L. Gates, Jenny E. Greene, Marton G. Hidas, Kyle D. Hiner, Nicholas Lee, Weidong Li, Matthew A. Malkan, Takeo Minezaki, Yu Sakata, Frank J.D. Serduke, Jeffrey M. Silverman, Thea N. Steele, Daniel Stern, Rachel A. Street, Carol E. Thornton, Tommaso Treu, Xiaofeng Wang, Jong-Hak Woo, Yuzuru Yoshii

Physics

We have recently completed a 64-night spectroscopic monitoring campaign at the Lick Observatory 3-m Shane telescope with the aim of measuring the masses of the black holes in 12 nearby (z < 0.05) Seyfert 1 galaxies with expected masses in the range ~10⁶-10⁷ M _☉ and also the well-studied nearby active galactic nucleus (AGN) NGC 5548. Nine of the objects in the sample (including NGC 5548) showed optical variability of sufficient strength during the monitoring campaign to allow for a time lag to be measured between the continuum fluctuations and the response to these fluctuations in the broad Hβ emission. We present here the light curves for all …

The Lick Agn Monitoring Project: Photometric Light Curves And Optical Variability Characteristics, Jonelle L. Walsh, Takeo Minezaki, Misty C. Bentz, Aaron J. Barth, Nairn Baliber, Weidong Li, Daniel Stern, Vardha Nicola Bennert, Timothy M. Brown, Gabriela Canalizo, Alexei V. Filippenko, Elinor L. Gates, Jenny E. Greene, Matthew A. Malkan, Yu Sakata, Rachel A. Street, Tommaso Treu, Jong-Hak Woo, Yuzuru Yoshii

Physics

The Lick AGN Monitoring Project targeted 13 nearby Seyfert 1 galaxies with the intent of measuring the masses of their central black holes using reverberation mapping. The sample includes 12 galaxies selected to have black holes with masses roughly in the range 10⁶-10⁷ M _☉, as well as the well-studied active galactic nucleus (AGN) NGC 5548. In conjunction with a spectroscopic monitoring campaign, we obtained broadband B and V images on most nights from 2008 February through 2008 May. The imaging observations were carried out by four telescopes: the 0.76 m Katzman Automatic Imaging Telescope, the …