Physical Sciences and Mathematics Commons^™

Chyd1 Solution Phase Synthesis Optimization And The Development Of A Novel Human Growth Hormone Antagonist And Agonist, Philip Murray

USF Tampa Graduate Theses and Dissertations

Inhibiting protein-protein interactions to achieve a therapeutically desired effect has been a goal in the field of drug discovery for decades. Recently, advances in peptidomimetics have led researches to the use of cyclized peptides to achieve this goal. Cyclization of linear peptides restricts the number of conformations of the peptide, increasing the peptide's affinity to binding to the desired target. Cyclization also stabilizes the peptide, allowing the peptide to be resistant to proteases. This study explores the optimization of solution phase synthesis of an important integrin-mediated cell adhesion cyclic peptide for the therapeutic inhibition of multiple myeloma, cHYD1. cHYD1 was …

Encapsulation Of High Temperature Phase Change Materials For Thermal Energy Storage, Rupa Nath

USF Tampa Graduate Theses and Dissertations

Thermal energy storage is a major contributor to bridge the gap between energy demand (consumption) and energy production (supply) by concentrating solar power. The utilization of high latent heat storage capability of phase change materials is one of the keys to an efficient way to store thermal energy. However, some of the limitations of the existing technology are the high volumetric expansion and low thermal conductivity of phase change materials (PCMs), low energy density, low operation temperatures and high cost. The present work deals with encapsulated PCM system, which operates at temperatures above 500°C and takes advantage of the heat …

Defining Earth Smarts: A Construct Analysis For Socioecological Literacy Based On Justly Maintaining Quality Of Life, Bryan H. Nichols

USF Tampa Graduate Theses and Dissertations

This paper describes the creation and validation of a new educational construct. Socioecological literacy, or earth smarts, describes the qualities we need to justly maintain or improve our quality of life in a changing world. It was created using construct analysis techniques and systems tools, drawing on an extensive, transdisciplinary body of literature. Concepts related to environmental, ecological and scientific literacy, sustainability and citizenship were combined with educational frameworks, new research in science education, and modern cognitive psychology. After the initial formulation, the results were considered by a variety of experts and professionals from the fields of ecology, environmental science …

Mangroves, Mudbanks And Seawalls: Political Ecology Of Adaptation To Sea Level Rise In Suriname, Ravic Nijbroek

USF Tampa Graduate Theses and Dissertations

This study seeks to understand how global discourses of sea level rise (SLR) and mangrove ecology influence national climate change adaptation policy to reduce coastal vulnerability in Suriname. A majority of the Surinamese population lives along the low elevation coastal zone and is highly exposed to projected SLR. Failure by the international community to reach agreement on climate change mitigation means that vulnerable coastal communities must adapt. The Suriname coast is predominantly shaped by mudbanks and mangroves which together provide protection against coastal erosion and trap sediments resulting in coastal accretion. Knowledge claims of mangrove ecology and utility in SLR …

Statistical Content In Middle Grades Mathematics Textbooks, Maria Consuelo (Suzie) Capiral Pickle

USF Tampa Graduate Theses and Dissertations

Statistical Content in Middle Grades Mathematics Textbooks

Maria Consuelo (Suzie) Capiral Pickle

Abstract

This study analyzed the treatment and scope of

statistical concepts in four, widely-used, contemporary, middle

grades mathematics textbook series: Glencoe Math Connects,

Prentice Hall Mathematics, Connected Mathematics Project, and

University of Chicago School Mathematics Project. There were

three phases for the data analysis. Phase 1 addressed the location

and sequence of the statistical concepts. Phase 2 focused upon an

examination of the lesson narrative, its components and scope.

Phase 3 analyzed the level of cognitive demand required of the

students to complete the exercises, and the total …

Novel Blends Of Sulfur-Tolerant Water-Gas Shift Catalysts For Biofuel Applications, Timothy Michael Roberge

USF Tampa Graduate Theses and Dissertations

As traditional sources of energy become depleted, significant research interest has gone into conversion of biomass into renewable fuels. Biomass-derived synthesis gas typically contains concentrations of approximately 30 to 600 ppm H2S in stream. H2S is a catalyst poison which adversely affects downstream processing of hydrogen for gas to liquid plants. The water-gas shift reaction is an integral part of converting CO and steam to H2 and CO2. Currently, all known water-gas shift catalysts deactivate in sulfur concentrations typical of biomass-derived synthesis gas. Novel catalysts are needed to remain active in the presence of sulfur concentrations in order to boost …

Natural And Anthropogenic Influences On The Morphodynamics Of Sandy And Mixed Sand And Gravel Beaches, Tiffany Roberts

USF Tampa Graduate Theses and Dissertations

Beaches and coastal environments are dynamic, constantly shaped and reshaped by natural processes and anthropogenic modifications. The morphodynamics and influence of natural and anthropogenic factors of two different coasts at various temporal and spatial scales are discussed.

To quantify the performance of several beach nourishment projects at annual temporal and kilometer spatial scales on three adjacent microtidal low-wave energy barrier islands in west-central Florida, a total of 5,200 beach and nearshore-profiles spaced at 300 m were surveyed monthly to bi-monthly from 2006-2010. Beach nourishment performance is most significantly influenced by the interruption of longshore sediment transport by complex tidal-inlet processes. …

Asymmetric Intra- And Intermolecular Cyclopropanation By Co(Ii)- Based Metalloradical Catalysis, Xue Xu

USF Tampa Graduate Theses and Dissertations

Metal-catalyzed cyclopropanation of olefins with diazo reagents has attracted research interest because of its fundamental and practical importance. The resulting cyclopropyl units are recurrent motifs in biologically important molecules and can serve as versatile precursors in organic synthesis. Since they were first introduced in 2004, Co(II) complexes of D₂-symmetric chiral amidoporphyrins [Co(D₂-Por*)] have emerged as a new class of catalysts for asymmetric cyclopropanation. These metalloradical catalysts have been shown to be highly effective for asymmetric intermolecular cyclopropanation of a broad scope of substrates with different classes of carbene sources, particularly including electron-deficient olefins and acceptor/acceptor-substituted …

Integrable Couplings Of The Kaup-Newell Soliton Hierarchy, Mengshu Zhang

USF Tampa Graduate Theses and Dissertations

By enlarging the spatial and temporal spectral problems within a certain Lie algebra, a hierarchy of integrable couplings of the Kaup-Newell soliton equations is constructed. The recursion operator of the resulting hierarchy of integrable couplings is explicitly computed. The integrability of the new coupling hierarchy is exhibited by showing the existence of infinitely many commuting symmetries.

Extraction Of Text Objects In Image And Video Documents, Jing Zhang

USF Tampa Graduate Theses and Dissertations

The popularity of digital image and video is increasing rapidly. To help users navigate libraries of image and video, Content Based Information Retrieval (CBIR) system that can automatically index image and video documents are needed. However, due to the semantic gap between low-level machine descriptors and high-level semantic descriptors, the existing CBIR systems are still far from perfect. Text embedded in multi-media data, as a well-defined model of concepts for humans' communication, contains much semantic information related to the content. This text information can provide a much truer form of content-based access to the image and video documents if it …

Economic Culture And Trading Behaviors In Information Markets, Khalid Nasser Alhayyan

USF Tampa Graduate Theses and Dissertations

There are four main components for influencing traders' behaviors in an information market context: trader characteristics, organizational characteristics, market design, and external information. This dissertation focuses on investigating the impact of individual trader characteristics on trading behaviors. Two newly-developed constructs, highly relevant to information market contexts, were identified to increase our understanding about trading behaviors: trader's economic culture and trader independence. The theory of planned behavior is used as the theoretical basis to postulate hypotheses for empirical testing. Data collected from subjects through a series of web-based experiments shows that trader participation can be fostered through recruiting individuals who are …

Bayesian Inference On Mixed-Effects Models With Skewed Distributions For Hiv Longitudinal Data, Ren Chen

USF Tampa Graduate Theses and Dissertations

Statistical models have greatly improved our understanding of the pathogenesis of HIV-1 infection

and guided for the treatment of AIDS patients and evaluation of antiretroviral (ARV) therapies.

Although various statistical modeling and analysis methods have been applied for estimating the

parameters of HIV dynamics via mixed-effects models, a common assumption of distribution is

normal for random errors and random-effects. This assumption may lack the robustness against

departures from normality so may lead misleading or biased inference. Moreover, some covariates

such as CD4 cell count may be often measured with substantial errors. Bivariate clustered

(correlated) data are also commonly encountered in …

Digital Holographic Measurement Of Nanometric Optical Excitation On Soft Matter By Optical Pressure And Photothermal Interactions, David C. Clark

USF Tampa Graduate Theses and Dissertations

In this dissertation we use digital holographic quantitative phase microscopy to observe and measure phase-only structures due to induced photothermal interactions and nanoscopic structures produced by photomechanical interactions. Our use of the angular spectrum method combined with off-axis digital holography allows for the successful hologram acquisition and processing necessary to view these phenomena with nanometric and, in many cases, subnanometric precision. We show through applications that this has significance in metrology of bulk fluid and interfacial properties.

Our accurate quantitative phase mapping of the optically induced thermal lens in media leads to improved measurement of the absorption coefficient over existing …

Crack Analysis In Silicon Solar Cells, Maria Ines Echeverria Molina

USF Tampa Graduate Theses and Dissertations

Solar cell business has been very critical and challenging since more efficient and low costs materials are required to decrease the costs and to increase the production yield for the amount of electrical energy converted from the Sun's energy. The silicon-based solar cell has proven to be the most efficient and cost-effective photovoltaic industrial device. However, the production cost of the solar cell increases due to the presence of cracks (internal as well as external) in the silicon wafer. The cracks of the wafer are monitored while fabricating the solar cell but the present monitoring techniques are not sufficient when …

Tagline: Information Extraction For Semi-Structured Text Elements In Medical Progress Notes, Dezon K. Finch

USF Tampa Graduate Theses and Dissertations

Text analysis has become an important research activity in the Department of Veterans Affairs (VA). Statistical text mining and natural language processing have been shown to be very effective for extracting useful information from medical documents. However, neither of these techniques is effective at extracting the information stored in semi-structure text elements. A prototype system (TagLine) was developed as a method for extracting information from the semi-structured portions of text using machine learning. Features for the learning machine were suggested by prior work, as well as by examining the text, and selecting those attributes that help distinguish the various classes …

Effects Of Gps Error On Animal Home Range Estimates, Garrett Hyzer

USF Tampa Graduate Theses and Dissertations

This study examined how variables related to habitat cover types can affect the positional accuracy of Global Positioning System (GPS) data and, subsequently, how wildlife home range analysis can be influenced when utilizing this inaccurate data. This study focused on measuring GPS accuracy relative to five habitat variables: open canopy, sparse canopy, dense canopy, open water, and building proximity. The study took place in Hillsborough County, in residential areas that contain all of these habitat types. Five GPS devices, designed for wildlife tracking purposes, were used to collect the data needed for this study. GPS data was collected under the …

Enantioselective Brønsted And Lewis Acid-Catalyzed Reaction Methodology: Aziridines As Building Blocks For Catalytic Asymmetric Induction, Shawn E. Larson

USF Tampa Graduate Theses and Dissertations

Chiral molecules as with biological activity are plentiful in nature and the chemical literature; however they represent a smaller portion of the pharmaceutical drug market. As asymmetric methodologies grow more powerful, the tools are becoming available to synthesize chiral molecules in an enantioselective and efficient manner.

Recent breakthroughs in our understanding of phosphoric acid now allow for Lewis acid catalysis via pairing with alkaline earth metals. Using alkaline earth metals with chiral phosphates is an emerging approach to asymmetric methodology, but already has an influential record.

The development of new conditions for the phosphoric acid-catalyzed highly enantioselective ring-opening of meso-aziridines …

Linear Mixed-Effects Models: Applications To The Behavioral Sciences And Adolescent Community Health, Lizmarie Gabriela Maldonado

USF Tampa Graduate Theses and Dissertations

Linear mixed-effects (LME) modeling is a widely used statistical method for analyzing repeated measures or longitudinal data. Such longitudinal studies typically aim to investigate and describe the trajectory of a desired outcome. Longitudinal data have the advantage over cross-sectional data by providing more accuracy for the model. LME models allow researchers to account for random variation among individuals and between individuals.

In this project, adolescent health was chosen as a topic of research due to the many changes that occur during this crucial time period as a precursor to overall well-being in adult life. Understanding the factors that influence how …

Design Of Colloidal Composite Catalysts For Co2 Photoreduction And For Co Oxidation, Bijith D. Mankidy

USF Tampa Graduate Theses and Dissertations

In this doctoral dissertation, novel colloidal routes were used to synthesize nanomaterials with unique features. We have studied the impact of nanoparticle size of catalyst, role of high surface area of a photocatalyst, and the effect of varying elemental composition of co-catalytic nanoparticles in combination with core-shell plasmonic nanoparticles. We have demonstrated how physical and chemical characteristics of nanomaterials with these unique features play a role in catalytic reactions, specifically the oxidation of CO and the photoreduction of CO2. The first objective of this doctoral dissertation involved the preparation of CoO nanoparticles with discrete nanoparticles sizes (1-14 nm) using a …

Bi-Integrable And Tri-Integrable Couplings And Their Hamiltonian Structures, Jinghan Meng

USF Tampa Graduate Theses and Dissertations

An investigation into structures of bi-integrable and tri-integrable couplings is undertaken. Our study is based on semi-direct sums of matrix Lie algebras. By introducing new classes of matrix loop Lie algebras, we form new Lax pairs and generate several new bi-integrable and tri-integrable couplings of soliton hierarchies through zero curvature equations. Moreover, we discuss properties of the resulting bi-integrable couplings, including infinitely many commuting symmetries and conserved densities. Their Hamiltonian structures are furnished by applying the variational identities associated with the presented matrix loop Lie algebras.

The goal of this dissertation is to demonstrate the efficiency of our approach and …

Water's Dependence On Energy: Analysis Of Embodied Energy In Water And Wastewater Systems, Weiwei Mo

USF Tampa Graduate Theses and Dissertations

Water and wastewater treatment is a critical service provided for protecting human health and the environment. Over the past decade, increasing attention has been placed on energy consumption in water and wastewater systems for the following reasons: (1) Water and energy are two interrelated resources. The nexus between water and energy can intensify the crises of fresh water and fossil fuel shortages; (2) The demand of water/wastewater treatment services is expected to continue to increase with increasing population, economic development and land use change in the foreseeable future; and (3) There is a great potential to mitigate energy use in …

Development Of Interatomic Potentials For Large Scale Molecular Dynamics Simulations Of Carbon Materials Under Extreme Conditions, Romain Perriot

USF Tampa Graduate Theses and Dissertations

The goal of this PhD research project is to devise a robust interatomic potential for large scale molecular dynamics simulations of carbon materials under extreme conditions. This screened-environment dependent reactive empirical bond order potential (SED-REBO) is specifically designed to describe carbon materials under extreme compressive or tensile stresses. Based on the original REBO potential by Brenner and co workers, SED-REBO includes reparametrized pairwise interaction terms and a new screening term, which serves the role of a variable cutoff. The SED-REBO potential overcomes the deficiencies found with the most commonly used interatomic potentials for carbon: the appearance of artificial forces due …

Sustainable Livelihood Analysis Of An Irrigation Project In Ta Haen, Cambodia., Irene Rehberger Bescos

USF Tampa Graduate Theses and Dissertations

This study examines potential livelihood outcomes from a recently established irrigation project in Ta Haen, Cambodia, in a sustainable livelihoods framework. The aim of this SAUCE irrigation project is to provide water for drinking and irrigation purposes with the goal of enhancing food by producing an extra rice harvest, the staple, per year. Field research conducted in December 2011 provided qualitative data from questionnaires, key informant interviews, and participant and direct observation, in addition to quantitative data from water quality analysis focusing on arsenic (a potential risk), pH, EC and temperature. Most of the people in the village did not …

Responses To Chemical Exposure By Foraminifera: Distinguishing Dormancy From Mortality, Benjamin James Ross

USF Tampa Graduate Theses and Dissertations

The Deepwater Horizon blowout in 2010 released an estimated 4.9 million barrels of crude oil into the Gulf of Mexico in the 83 days between the initial explosion and the capping of the well. Response included extensive use of Corexit© oil dispersant. Although South Florida was spared exposure by currents, this event highlights the need for effective bioassay organisms for coral reefs. Amphistegina spp. are benthic foraminifers that host diatom symbionts in a relationship similar to that of coral and their zooxanthellae. Amphistegina spp. occur abundantly in reef communities nearly worldwide, are easily collected and maintained in culture, and are …

Stochastic Hybrid Dynamic Systems: Modeling, Estimation And Simulation, Daniel Siu

USF Tampa Graduate Theses and Dissertations

Stochastic hybrid dynamic systems that incorporate both continuous and discrete dynamics have been an area of great interest over the recent years. In view of applications, stochastic hybrid dynamic systems have been employed to diverse fields of studies, such as communication networks, air traffic management, and insurance risk models. The aim of the present study is to investigate properties of some classes of stochastic hybrid dynamic systems.

The class of stochastic hybrid dynamic systems investigated has random jumps driven by a non-homogeneous Poisson process and deterministic jumps triggered by hitting the boundary. Its real-valued continuous dynamic between jumps is described …

Assessment Of Methods To Manipulate Thermal Emission And Evaluate The Quality Of Thermal Radiation For Direct Energy Conversion, Samantha Wijewardane

USF Tampa Graduate Theses and Dissertations

ABSTRACT

Control of spectral thermal emission from surfaces may be desirable in some energy related applications, such as nano-scale antenna energy conversion and thermophotovoltaic conversion. There are a number of methods, from commercially available paints to advanced surface gratings that can be used to modify the thermal emission from a surface. To find out the proper emission controlling technique for a given energy conversion method all the surface emission controlling methods are comprehensively reviewed regarding the emission control capabilities and the range of possible applications. Radiation with high degree of coherence can be emitted using advanced surface emission controlling techniques. …

Comparisons Of Observed And Modeled Oh And Ho2 Concentrations During The Ambient Measurement Period Of The Ho(X)Comp Field Campaign, Y. Kanaya, A. Hofzumahaus, H. -P. Dorn, T. Brauers, H. Fuchs, F. Holland

USF St. Petersburg campus Faculty Publications

A photochemical box model constrained by ancillary observations was used to simulate OH and HO2 concentrations for three days of ambient observations during the HO(x)Comp field campaign held in Julich, Germany in July 2005. Daytime OH levels observed by four instruments were fairly well reproduced to within 33% by a base model run (Regional Atmospheric Chemistry Mechanism with updated isoprene chemistry adapted from Master Chemical Mechanism ver. 3.1) with high R-2 values (0.72-0.97) over a range of isoprene (0.3-2 ppb) and NO (0.1-10 ppb) mixing ratios. Daytime HO2(*) levels, reconstructed from the base model results taking into account the sensitivity …

Crystal Structure Of Graphite Under Room-Temperature Compression And Decompression, Yuejian Wang, Joseph E. Panzik, Boris Kiefer, Kanani K. M. Lee

School of Geosciences Faculty and Staff Publications

Recently, sophisticated theoretical computational studies have proposed several new crystal structures of carbon (e.g., bct-C4, H-, M-, R-, S-, W-, and Z-carbon). However, until now, there lacked experimental evidence to verify the predicted high-pressure structures for cold-compressed elemental carbon at least up to 50 GPa. Here we present direct experimental evidence that this enigmatic high-pressure structure is currently only consistent with M-carbon, one of the proposed carbon structures. Furthermore, we show that this phase transition is extremely sluggish, which led to the observed broad x-ray diffraction peaks in previous studies and hindered the proper identification of the post-graphite phase in …

Vapor-Liquid Phase Equilibria Using Monte Carlo Wang-Landau Simulations, Tsvetan Aleksandrov

Theses and Dissertations

The experimental determination of the critical point of metals is inherently connected with difficulties of measuring large temperatures and pressures. On the other hand, that of straight alkane chains larger than ten carbon atoms and branched chains larger than eight atoms is burdensome due to decomposition of the molecules while in the vapor phase. Therefore molecular simulations stand as an appropriate alternative for determining the critical point and phase coexistence properties of these fluids. Most simulation methods that are apt for this task rely on particles insertion and deletion moves that can significantly complicate the simulation, since high density in …

Implementation Of A Middleware Architecture For Collaboration Among Mobile Devices In Opportunistic Networks., Samaya Madhavan

Computer Science and Engineering Theses

Opportunistic networks provide a viable platform for mobile communications due to the ubiquity of smart phones. These networks are characterized by lack of end to-end reliable connections. In such networks, establishing collaboration among nodes is a challenge. In this thesis, a middleware architecture for opportunistic communication and collaboration has been designed, developed, and implemented. The middleware architecture supports a protocol for efficiently exchanging information between mobile nodes during an opportunistic contact. Message formats for differentiating the various kinds of messages that will be transferred across the network are defined to maintain consistency and reduce redundancy. The architecture consists of several …