Physical Sciences and Mathematics Commons^™

The Birds Of A Feather Research Challenge, Todd W. Neller

Computer Science Faculty Publications

Neller presented a set of research challenges for undergraduates that allow an excellent formative experience of research, writing, peer review, and potential presentation and publication through a top-tier conference. The focus problem is the analysis of a newly-designed solitaire card game, Birds of a Feather, so potentials for discovery abound. Open access talk slides, research code, solvability data sets, research tutorial videos, and more are also available at http://cs.gettysburg.edu/~tneller/puzzles/boaf .

Would You Like To Motivate Software Testers? Ask Them How, Ronnie Santos, Cleyton Magalhaes, Jorge Correia-Neto, Fabio Queda Silva, Luiz Fernando Capretz, Rodrigo Souza

Electrical and Computer Engineering Publications

Considering the importance of software testing to the development of high quality and reliable software systems, this paper aims to investigate how can work-related factors influence the motivation of software testers. Method. We applied a questionnaire that was developed using a previous theory of motivation and satisfaction of software engineers to conduct a survey-based study to explore and understand how professional software testers perceive and value work-related factors that could influence their motivation at work. Results. With a sample of 80 software testers we observed that software testers are strongly motivated by variety of work, creative tasks, recognition for their …

The Santa Clara, 2017-11-09, Santa Clara University

The Santa Clara

No abstract provided.

Reconstructing Yeasts Phylogenies And Ancestors From Whole Genome Data, Bing Feng, Yu Lin, Lingxi Zhou, Yan Guo, Robert Friedman, Roufan Xia, Chao Liu, Jijun Tang

Faculty Publications

Phylogenetic studies aim to discover evolutionary relationships and histories. These studies are based on similarities of morphological characters and molecular sequences. Currently, widely accepted phylogenetic approaches are based on multiple sequence alignments, which analyze shared gene datasets and concatenate/coalesce these results to a final phylogeny with maximum support. However, these approaches still have limitations, and often have conflicting results with each other. Reconstructing ancestral genomes helps us understand mechanisms and corresponding consequences of evolution. Most existing genome level phylogeny and ancestor reconstruction methods can only process simplified real genome datasets or simulated datasets with identical genome content, unique genome markers, …

Reconstructing Yeasts Phylogenies And Ancestors From Whole Genome Data, Bing Feng, Yu Ling, Lingxi Zhou, Roufan Xia, Fei Hu, Chao Liu

Faculty Publications

Phylogenetic studies aim to discover evolutionary relationships and histories. These studies are based on similarities of morphological characters and molecular sequences. Currently, widely accepted phylogenetic approaches are based on multiple sequence alignments, which analyze shared gene datasets and concatenate/coalesce these results to a final phylogeny with maximum support. However, these approaches still have limitations, and often have conflicting results with each other. Reconstructing ancestral genomes helps us understand mechanisms and corresponding consequences of evolution. Most existing genome level phylogeny and ancestor reconstruction methods can only process simplified real genome datasets or simulated datasets with identical genome content, unique genome markers, …

Coupled Plasmon/Molecule Dynamics Near Core-Shell Nanoparticles: Synthesis, Ultrafast Characterization, And Quantum/Classical Modeling, Holden Tyler Smith

LSU Doctoral Dissertations

In this dissertation, the resonance coupling of chromaphoric dyes adsorbed on the surface of plasmonic nanoparticles (NPs) are investigated using a combined theoretical and experi- mental approach. Colloidal gold, gold-silver core-shell, silver-gold core-shell, and gold-silver- gold core-shell-shell NPs are considered. These NPs are thiolated with mercaptosuccinic acid, and malachite green dyes are adsorbed to the surface of the nanoparticle (NP) via elec- trostatic interactions. Second harmonic generation is used to determine the surface to the isotherm of the molecular dyes to the colloidal nanoparticle surface. Adsorption isotherms show that the SHG intensity increases as the concentration of dye increases, reaching …

Long-Term Antagonistic Effect Of Increased Precipitation And Nitrogen Addition On Soil Respiration In A Semiarid Steppe, Hongyan Han, Yue Du, Dafeng Hui, Lin Jiang, Mingxing Zhong, Shiqiang Wan

Biology Faculty Research

Changes in water and nitrogen (N) availability due to climate change and atmospheric N deposition could have significant effects on soil respiration, a major pathway of carbon (C) loss from terrestrial ecosystems. A manipulative experiment simulating increased precipitation and atmospheric N deposition has been conducted for 9 years (2005–2013) in a semiarid grassland in Mongolian Plateau, China. Increased precipitation and N addition interactively affect soil respiration through the 9 years. The interactions demonstrated that N addition weakened the precipitation-induced stimulation of soil respiration, whereas increased precipitation exacerbated the negative impacts of N addition. The main effects of increased precipitation and …

Estimating Memory Deterioration Rates Following Neurodegeneration And Traumatic Brain Injuries In A Hopfield Network Model, Melanie Weber, Pedro D. Maia, J. Nathan Kutz

Mathematics Faculty Publications

Neurodegenerative diseases and traumatic brain injuries (TBI) are among the main causes of cognitive dysfunction in humans. At a neuronal network level, they both extensively exhibit focal axonal swellings (FAS), which in turn, compromise the information encoded in spike trains and lead to potentially severe functional deficits. There are currently no satisfactory quantitative predictors of decline in memory-encoding neuronal networks based on the impact and statistics of FAS. Some of the challenges of this translational approach include our inability to access small scale injuries with non-invasive methods, the overall complexity of neuronal pathologies, and our limited knowledge of how networks …

A Tree Based Broadcast Scheme For (M, K)-Firm Real-Time Stream In Wireless Sensor Networks, Ho Sung Park, Beom Su Kim, Kyong Hoon Kim, Babar Shah, Ki Il Kim

All Works

© 2017 by the authors. Recently, various unicast routing protocols have been proposed to deliver measured data from the sensor node to the sink node within the predetermined deadline in wireless sensor networks. In parallel with their approaches, some applications demand the specific service, which is based on broadcast to all nodes within the deadline, the feasible real-time traffic model and improvements in energy efficiency. However, current protocols based on either flooding or one-to-one unicast cannot meet the above requirements entirely. Moreover, as far as the authors know, there is no study for the real-time broadcast protocol to support the …

Modeling The Gross-Pitaevskii Equation Using The Quantum Lattice Gas Method, Armen M. Oganesov

Dissertations, Theses, and Masters Projects

We present an improved Quantum Lattice Gas (QLG) algorithm as a mesoscopic unitary perturbative representation of the mean field Gross Pitaevskii (GP) equation for Bose–Einstein Condensates (BECs). The method employs an interleaved sequence of unitary collide and stream operators. QLG is applicable to many different scalar potentials in the weak interaction regime and has been used to model the Korteweg–de Vries (KdV), Burgers and GP equations. It can be implemented on both quantum and classical computers and is extremely scalable. We present results for 1D soliton solutions with positive and negative internal interactions, as well as vector solitons with inelastic …

Democratic Civic Engagement: Transformative Local, Inclusive Decision-Making To Achieve Global Peace And Climate Solutions, Leah Ceperley

Biennial Conference: The Social Practice of Human Rights

The UN Sustainable Development Goals call for action on Climate (No. 13) and Strengthening Governance (No. 16) as imperative to transform our world toward one that is resilient, just, and peaceful. Climate change is a global problem, marked frequently in the U.S. by indifference, with far-reaching impacts disproportionately burdening the poor and vulnerable worldwide. Global in scope, its sources, impacts, and fields of action are local. Combating indifference at the local level can strengthen local governance structures, build trust across ideological divides, and shift the conversation from indifference to action.

Using an example from a University of Dayton-sponsored National Issues …

Encounters With Climate Change: How Sdg 13 Can Move From Awareness To Action, Rebecca C. Potter

Biennial Conference: The Social Practice of Human Rights

In a well-known passage from his book I and Thou, Martin Buber relates his encounter with a tree: “I contemplate a tree,” he writes, and then lists the various ways he could perceive the tree, as an artist or biologist, as someone interested in the trees parts and construction or interested in its function as a living system. But in all cases, Buber observes, “the tree remains my object and has its place and its time span, its kind and condition.”

Yet sometimes, “if will and grace are conjoined,” Buber describes being drawn into a relation with the tree wherein …

Climate Change, Development, And The Global Commons, Robert J. Brecha

Biennial Conference: The Social Practice of Human Rights

An important link between energy, climate change, human development, and human rights comes in the form of a question that has yet to be answered satisfactorily: The earth’s atmosphere and other physical systems are the ultimate example of the global commons. Do future generations have a human right to an unchanged earth system? Sustainable Development Goals 13, 14, and 15 imply an affirmative answer. Given that climate scientists have a good estimate of the amount of carbon dioxide that can be emitted before the safe uptake capacity of the atmosphere is breached, how do we allocate that remaining atmospheric capacity …

Building Academic/Practitioner Teams For Human Rights Projects: Examples, Lessons Learned, And Pitfalls To Avoid, Theresa Harris

Biennial Conference: The Social Practice of Human Rights

Academics are increasingly interested in getting out of their classrooms and labs to contribute their knowledge, expertise, and resources to help communities develop evidence-based policies. In addition to post-election initiatives such as the March for Science and 314 Action, many academics are joining “without borders”-type programs and organizations that connect academics with opportunities to volunteer their time and talents for “social good.”

One of the longest-running of these is On-call Scientists, an initiative of the American Association for the Advancement of Science (AAAS) that connects human rights organizations with pro bono scientists across all fields — life, physical, behavioral, and …

Geochemistry Of The Dome Mine Ankerite Veins: Insights Into The Multi-Stage Enrichment Of A World-Class Orogenic Gold Deposit, Jessica M. Stromberg

Electronic Thesis and Dissertation Repository

The Dome Mine in the world-class Timmins camp has produced over 16 Moz of gold during its 108 year production history. This gold endowment is the result of multistage enrichment of which the first stage is a set of ankerite veins that extend over 5,400 m in strike and 1,500 m vertically. A deposit wide geochemical study of the Dome ankerite veins was undertaken to characterize their genesis, geochemistry, and role in the deposit mineralization history. Samples and mapping from new and historic mine workings, bulk rock geochemistry, and stable isotope geochemistry were used to constrain the depositional context of …

The Importance Of Regional And Landscape Context And Climate Change To Northern Bobwhite Management, Frank R. Thompson Iii

National Quail Symposium Proceedings

Long-term declines in northern bobwhite (Colinus virginianus) in the United States are presumably due to decades of habitat loss or degradation at a national scale. Food and fiber production characterized by replacement of open woodlands and savannas by dense forest, intensification of agriculture, and conversion of native grasslands to nonnative pastures have degraded habitats for most grassland and early successional birds. Declines in bobwhite and associated species occurred within this context at a scale that has overwhelmed wildlife management efforts. However, with understanding of scale and context, managers could sustain these species in some future landscapes. Increasing urbanization …

Breeding Season Space Use And Habitat Selection Of Adult Female Scaled And Gambel's Quail In West Texas, Richard A. Temple, Louis Harveson, Ryan S. Luna

National Quail Symposium Proceedings

We used radiotelemetry to investigate breeding-season (1 Apr–1 Sep, 2012 and 2013) home ranges and habitat selection of adult female scaled (Callipepla squamata) and Gambel’s quail (C. gambelii) in the eastern Chihuahuan Desert, Texas. Mean breeding-season home range (95% fixed kernel) for scaled quail was 145.02 ± 23.56 ha (range = 22.03–538.24 ha) and 156.32 ± 13.04 ha (range = 66.15– 270.74 ha) for Gambel’s quail. Mean core-use area (50% fixed kernel) for scaled quail was 31.38 ± 4.80 ha (range = 4.03–111.36 ha) and 32.87 ± 2.61 ha (range = 12.19–52.36 ha) for Gambel’s quail. …

The Saga Of The Masked Bobwhite: Lessons Learned And Unlearned, David E. Brown, Kevin B. Clark

National Quail Symposium Proceedings

No bird has generated so much interest and controversy as has the masked bobwhite (Colinus virginianus ridgwayi). From its discovery in 1884 to the present, this gallinaceous game bird has captured the attention of hunter-naturalists, ornithologists, collectors, game breeders, conservationists and bureaucrats. Believed threatened with extinction throughout its 130 year history, the masked bobwhite prompted several collecting expeditions, a survey technique study, a plethora of propagation attempts, and the purchase of an 117,464 acre refuge by the federal government, and expenditures totaling millions of dollars. Yet, despite propagated stock existing in a captive facility on Buenos Aires National …

Conservation Status Of The Masked Bobwhite In Sonora, Mexico, David García-Solórzano, Edgardo López-González, Carlos González-Rebeles Islas

National Quail Symposium Proceedings

The historical distribution of the endangered masked bobwhite (Colinus virginianus ridgwayi) ranged from southern Arizona, United States, to Central Sonora, Mexico. Research in Sonora the past 30 years focused on the largest known populations, near the town of Benjamin Hill on the El Carrizo ranch. Research and perceptions by local residents pointed to a decline in masked bobwhite over the past decade. We evaluated existence of the subspecies during 2013-15 by searching transects and interviewing local residents. Our evaluation yielded no validated observations of masked bobwhite, and subsequently we call for further coordinated population monitoring and the development …

Survival And Nesting Ecology Of Scaled Quail In The Trans-Pecos, Texas, Carlos E. Gonzalez Gonzalez, Louis A. Harveson, Ryan S. Luna

National Quail Symposium Proceedings

Scaled quail (Callipepla squamata) are one of the most ecologically and economically important wildlife species in the Trans-Pecos, because they are the primary upland game bird in the Chihuahuan Desert. Using radiotelemetry, we evaluated survival (Kaplan–Meier) and nesting success of quail on 3 study sites in the Trans-Pecos, Texas: one (Santiago Mountain Ranch, central Brewster Co.) was supplemented with milo (Sorghum bicolor) year-round, the second (Lado Ranch, south Culberson Co.) never used supplements, and the third (Apache Ranch, central Culberson Co.) was supplemented with quail blocks. We trapped and radiocollared 164 female quail collectively across all …

Efficacy Of A Soft Release Strategy For Translocating Scaled Quail In The Rolling Plains Of Texas, Rebekah E. Ruzicka, Kara B. Campbell, Michelle C. Downey, Dale Rollins, Bradley Kubečka, Matthew Poole, Donald C. Ruthven

National Quail Symposium Proceedings

Scaled Quail (Callipepla squamata) populations have become locally extinct and spatially fragmented in the Rolling Plains ecoregion of Texas. Translocating Scaled Quail from core to declining populations could augment populations or re-establishing extinct populations. Although translocations of scaled quail have been attempted in Texas, none have been documented and none have attempted to identify best practices. Release strategy (i.e., hard or soft release) is a factor that can influence the success of a translocation. Our objective was to compare daily apparent survival of scaled quail translocated to the Rolling Plains between 2 release treatment groups: hard- and soft-release. …

Effects Of Source Population And Release Strategy On Survival And Dispersal Of Translocated Scaled Quail In The Rolling Plains Of Texas—A Preliminary Report, Rebekah E. Ruzicka, Dale Rollins

National Quail Symposium Proceedings

Scaled quail (Callipepla squamata) have declined 3.5% annually in Texas from 1966-2013, but declines have not been uniform across the state. The Rolling Plains Ecoregion has experienced a 6.8% decrease during this period, while the western Edwards Plateau has remained stable. Habitat loss that has contributed to scaled quail decline also inhibits recolonization. Translocation has become an increasingly popular tool to reestablish populations for recreational or conservational purposes. Overall success rate of translocations is low and has prompted research into factors that contribute to the establishment of a self-sustaining population. Source population and release strategy are two translocation …

Changes In Habitat Use Of Montezuma Quail In Response To Tree Canopy Reduction In The Capitan Mountains Of New Mexico, Ryan S. Luna, Elizabeth A. Oaster, Karlee D. Cork, Ryan O'Shaughnessy

National Quail Symposium Proceedings

Montezuma quail (Cyrtonyx montezumae) are unique among quail with respect to clutch size, diet, covey dynamics, and habitat use. With the exception of a few notable early studies, there is relatively little information on the ecology of Montezuma quail. Pervious research has indicated that one of the primary habitats utilized by Montezuma quail is pinyon–juniper (Pinus spp.–Juniperus spp.) woodlands. Throughout many areas of the southwestern United States, pinyon–juniper woodlands are often targeted for thinning projects. Many studies have been conducted on the amount of canopy cover needed by other quail species. However, data on characteristics of …

A Presence-Absence Survey To Monitor Montezuma Quail In Western Texas, Cristela Gonzalez Sanders, Fidel Hernández, Leonard A. Brennan, Andrew N. Tri, Robert Perez

National Quail Symposium Proceedings

Developing an effective monitoring program for Montezuma quail (Cyrtonyx montezumae) is challenging because the technique must be practical for surveying vast, remote landscapes while accounting for the species’ low detectability. We used call-back surveys within a presence–absence framework to estimate occupancy and detection probability of Montezuma quail and used this information in conjunction with habitat data to develop an estimated probability of occurrence map for the species. We established survey points at 4 sites in western Texas (n = 20–30 points/site) and conducted 5 repeat surveys/season during June–August 2007 and 2008. We documented abiotic conditions (temperature, time …

Survival Demographics Of Montezuma Quail In Southeast Arizona, Pedro M. Chavarria, Nova J. Silvy, Roel R. Lopez, Donald S. Davis, Angel Montoya

National Quail Symposium Proceedings

Many facets of Montezuma quail (Cyrtonyx montezumae mearnsi) population dynamics, such as survival and causes of mortality, are unknown because of limited or lack of mark–recapture studies on wild populations of this species. Much of what is known about this species comes from casual observations in the field or from dog-assisted flush-count surveys. Further insight into rate and causes of mortality for this species is necessary to ensure proper conservation measures. We evaluated survival and causes of mortality of Montezuma quail in southeastern Arizona from winter 2007 to spring 2010. Survival was determined from quail captured, radiotagged, and …

Ranges And Movements Of Montezuma Quail In Southeast Arizona, Pedro M. Chavarria, Nova J. Silvy, Roel R. Lopez, Donald S. Davis, Angel Montoya

National Quail Symposium Proceedings

Historical assumptions about Montezuma quail movements and home ranges at the population level are limited due to the lack of markrecapture studies on this species from which solid conclusions can be derived. Such information is crucial for estimating population sizes, densities, and rate of emigration and immigration throughout the landscape. Our study examined home range size of 29 Montezuma quail and movements of 65 quail in southeast Arizona from 2008–2010. We used radio telemetry to follow radio-tagged birds in 3 study sites that varied in vegetation composition and topography. Mean home range size (MCP) was about was similar (51 ha) …

Population Trends And A Revised Management Plan For Quail In California, Katherine S. Miller, Matt G. Meshriy, Scott S. Gardner

National Quail Symposium Proceedings

California supports a diversity of habitats suitable for mountain quail (Oreortyx pictus), California quail (Callipepla californica), and Gambel’s quail (Callipepla gambelii). These three species require different habitats for foraging, nesting and brood-rearing, and overwinter survival, yet most published information focuses on California quail. Currently the state-wide surveys for quail are limited to the North American Breeding Bird Survey (BBS) and the Audubon Christmas Bird Count. We used BBS data (1970–2013) to create abundance maps for quail throughout California. We developed 5-year averages to account for boom-and-bust cycles, and then established 100 random points for …

Evaluation Of Population Indices And Estimators For Scaled Quail In The Rolling Plains Of Texas, Bradley Kubečka, John T. Edwards, Fidel Hernández, Dale Rollins

National Quail Symposium Proceedings

Accurate and precise population indices and estimators are important to gain reliable knowledge and make appropriate management decisions. Indices and estimators for scaled quail (Callipepla squamata), however, have not been evaluated thoroughly. Our objectives are to compare relationships among 8 years of roadside counts, spring call counts, and mark-recapture data obtained from the Rolling Plains Quail Research Ranch in Fisher County, TX, USA. Furthermore, we assess the efficacy of distance-based helicopter surveys as a method for scaled quail density estimates as compared to mark-recapture estimates for 2016–2017.

Effect Of Meso-Mammal Nest Predator Activity On Northern Bobwhite Nest Success, Alexander L. Jackson, William E. Palmer, D. Clay Sisson, Theron M. Terhune Ii, James A. Martin

National Quail Symposium Proceedings

Perceived changes in predator-prey dynamics along with documented declines of northern bobwhite (Colinus virginianus) have created a renewed interest from biologists and managers about the role meso-mammals play in shaping bobwhite population trajectories. As part of a larger effort to understand this predator-prey relationship, we evaluated meso-mammal activity on sites where bobwhite demographic data was simultaneously being collected via radio- telemetry. During 1999–2006 we conducted 66 meso-mammal activity surveys using scent stations on 16 sites in 3 southeastern states (Florida, Georgia, and Alabama). We calculated an index of meso-mammal activity (PI), for each site, as the average number …

Habitat, Climate, And Raptors As Factors In The Northern Bobwhite Decline: A Multi-Scale Analysis, John T. Edwards, Fidel Hernández, David B. Wester, Leonard A. Brennan, Chad Parent, Robert Perez

National Quail Symposium Proceedings

Landscape-level processes such as habitat loss and fragmentation are primarily responsible for the declines in northern bobwhite (Colinus virginianus). These landscape processes generally occur at a scale beyond that of traditional quail studies and may involve not only habitat loss and fragmentation but also broad-scale changes in climate trends and predation risk. However, reductions in usable space and changes in habitat configuration at smaller scales may also reduce population viability. It is therefore imperative to study relationships to bobwhite populations at multiple scales. The objective of our research is to quantify to what extent habitat loss and fragmentation, …