Physical Sciences and Mathematics Commons^™

Weak-Value Amplification And Optimal Parameter Estimation In The Presence Of Correlated Noise, Josiah Sinclair, Matin Hallaji, Aephraim M. Steinberg, Jeff Tollaksen, Andrew N. Jordan

Mathematics, Physics, and Computer Science Faculty Articles and Research

We analytically and numerically investigate the performance of weak-value amplification (WVA) and related parameter estimation methods in the presence of temporally correlated noise. WVA is a special instance of a general measurement strategy that involves sorting data into separate subsets based on the outcome of a second “partitioning” measurement. Using a simplified correlated noise model that can be analyzed exactly together with optimal statistical estimators, we compare WVA to a conventional measurement method. We find that WVA indeed yields a much lower variance of the parameter of interest than the conventional technique does, optimized in the absence of any partitioning …

Implementation Guidelines For Green Data Centres, Abdallah Tubaishat, Sara Sumaidaa

All Works

Increased reliance on technology and online transactions has increased the heat generated in data centres, due to greater access, storage, aggregation and analysis of such data. This paper discusses the downsides of traditional data centres and highlights the importance of applying green IT practices. It explores the benefits and proposes guidelines on shifting to green data centres. The recommendations to go green are to: a) reduce energy by applying green IT practices, b) eliminate redundancies in server systems and cooling modules, c) turn on power management tools on servers and terminals when applicable, d) utilise newer technologies of power consumption …

The Alma Early Science View Of Fuor/Exor Objects - V. Continuum Disc Masses And Sizes, Lucas Cieza, Dary Ruiz-Rodriguez, Sebastian Perez, Simon Casassus, Jonathan P. Williams, Alice Zurlo, David A. Principe, Antonio Hales, Jose L. Prieto, John J. Tobin, Zhaohuan Zhu, Sebastian Marino

Physics & Astronomy Faculty Research

Low-mass stars build a significant fraction of their total mass during short outbursts of enhanced accretion known as FUor and EXor outbursts. FUor objects are characterized by a sudden brightening of ∼5 mag at visible wavelengths within 1 yr and remain bright for decades. EXor objects have lower amplitude outbursts on shorter time-scales. Here we discuss a 1.3 mm Atacama Large Millimeter/submillimeter Array (ALMA) mini-survey of eight outbursting sources (three FUors, four EXors, and the borderline object V1647 Ori) in the Orion Molecular Cloud. While previous papers in this series discuss the remarkable molecular outflows observed in the three FUor …

Sustainable East Africa Research In Community Health (Search): A Community Cluster Randomized Study Of Hiv "Test And Treat" Using Multi-Disease Approach In Rural Uganda And Kenya, Laura Balzer, Diane V. Havlir, Joshua Schwab, Mark J. Van Der Laan, Maya Petersen

Laura B. Balzer

Edge Colorings Of Complete Multipartite Graphs Forbidding Rainbow Cycles, Peter Johnson, Andrew Owens

Theory and Applications of Graphs

It is well known that if the edges of a finite simple connected graph on n vertices are colored so that no cycle is rainbow, then no more than n-1 colors can appear on the edges. In previous work it has been shown that the essentially different rainbow-cycle-forbidding edge colorings of K_n with n-1 colors appearing are in 1-1 correspondence with (can be encoded by) the (isomorphism classes of) full binary trees with n leafs. In the encoding, the natural Huffman labeling of each tree arising from the assignment of 1 to each leaf plays a role. Very recently …

Examining The Electrical Excitation, Calcium Signaling, And Mechanical Contraction Cycle In A Heart Cell, Kristen Deetz, Nygel Foster, Darius Leftwich, Chad Meyer, Shalin Patel, Carlos Barajas, Matthias K. Gobbert, Zana Coulibaly

Spora: A Journal of Biomathematics

As the leading cause of death in the United States, heart disease has become a principal concern in modern society. Cardiac arrhythmias can be caused by a dysregulation of calcium dynamics in cardiomyocytes. Calcium dysregulation, however, is not yet fully understood and is not easily predicted; this provides motivation for the subsequent research. Excitation-contraction coupling (ECC) is the process through which cardiomyocytes undergo contraction from an action potential. Calcium induced calcium release (CICR) is the mechanism through which electrical excitation is coupled with mechanical contraction through calcium signaling. The study of the interplay between electrical excitation, calcium signaling, and mechanical …

Total Molecular Gas Masses Of Planck – Herschel Selected Strongly Lensed Hyper Luminous Infrared Galaxies, K. C. Harrington, M. S. Yun, B. Magnelli, D. T. Frayer, A. Karim, A. Weiß, D. Riechers, E. F. Jiménez-Andrade, D. Berman, James Lowenthal, F. Bertoldi

Astronomy: Faculty Publications

We report the detection of CO(1–0) line emission from seven Planck and Herschel selected hyper luminous (LIR(8−1000μm) > 1013 L⊙) infrared galaxies with the Green Bank Telescope (GBT). CO(1–0) measurements are a vital tool to trace the bulk molecular gas mass across all redshifts. Our results place tight constraints on the total gas content of these most apparently luminous high-z star-forming galaxies (apparent IR luminosities of LIR > 1013 − 14 L⊙), while we confirm their predetermined redshifts measured using the Large Millimeter Telescope, LMT (zCO = 1.33–3.26). The CO(1–0) lines show similar profiles as compared to Jup = 2–4 transitions previously …

An Exactly Solvable Quench Protocol For Integrable Spin Models, Diptarka Das, Sumit R. Das, Damián A. Galante, Robert C. Myers, Krishnendu Sengupta

Physics and Astronomy Faculty Publications

Quantum quenches in continuum field theory across critical points are known to display different scaling behaviours in different regimes of the quench rate. We extend these results to integrable lattice models such as the transverse field Ising model on a one-dimensional chain and the Kitaev model on a two-dimensional honeycomb lattice using a nonlinear quench protocol which allows for exact analytical solutions of the dynamics. Our quench protocol starts with a finite mass gap at early times and crosses a critical point or a critical region, and we study the behaviour of one point functions of the quenched operator at …

Toward A Synthesis Of Conservation And Animal Welfare Science, David Fraser

David Fraser, PhD

Conservation biology and animal welfare science are multidisciplinary fields of research that address social concerns about animals. Conservation biology focuses on wild animals, works at the level of populations, ecological systems and genetic types, and deals with threats to biodiversity and ecological integrity. Animal welfare science typically focuses on captive (often domestic) animals, works at the level of individuals and groups, and deals with threats to the animals’ health and quality of life. However, there are many areas of existing or potential overlap: (i) many real-life problems, such as environmental contamination, urban development and transportation, create problems for animals that …

Rating Harms To Wildlife: A Survey Showing Convergence Between Conservation And Animal Welfare Views, S. Dubois, D. Fraser

David Fraser, PhD

Human activities may cause conservation concerns when animal populations or ecosystems are harmed and animal welfare concerns when individuals are harmed. In general, people are concerned with one or the other, as the concepts may be regarded as separate or even at odds. An online purposive survey of 339 British Columbians explored differences between groups that varied by gender, residency, wildlife engagement level and value orientation (conservation-oriented or animal welfare-oriented), to see how they rated the level of harm to wildlife caused by different human activities. Women, urban residents, those with low wildlife engagement, and welfare-orientated participants generally scored activities …

Nbpmf: Novel Network-Based Inference Methods For Peptide Mass Fingerprinting, Zhewei Liang

Electronic Thesis and Dissertation Repository

Proteins are large, complex molecules that perform a vast array of functions in every living cell. A proteome is a set of proteins produced in an organism, and proteomics is the large-scale study of proteomes. Several high-throughput technologies have been developed in proteomics, where the most commonly applied are mass spectrometry (MS) based approaches. MS is an analytical technique for determining the composition of a sample. Recently it has become a primary tool for protein identification, quantification, and post translational modification (PTM) characterization in proteomics research. There are usually two different ways to identify proteins: top-down and bottom-up. Top-down approaches …

Two Databases Derived From Bgc-Argo Float Measurements For Marine Biogeochemical And Bio-Optical Applications, Emanuele Organelli, Marie Barbieux, Hervé Claustre, Catherine Schmechtig, Antoine Poteau, Annick Bricaud, Emmanuel Boss, Nathan Briggs, Giorgio Dall'olmo, Fabrizio D'Ortenzio, Edouard Leymarie, Antoine Mangin, Grigor Obolensky, Christophe Penkerc'h, Louis Prieur, Collin Roesler, Romain Serra, Julia Uitz, Xiaogang Xing

Marine Sciences Faculty Scholarship

Since 2012, an array of 105 Biogeochemical-Argo (BGC-Argo) floats has been deployed across the world's oceans to assist in filling observational gaps that are required for characterizing open-ocean environments. Profiles of biogeochemical (chlorophyll and dissolved organic matter) and optical (single-wavelength particulate optical backscattering, downward irradiance at three wavelengths, and photosynthetically available radiation) variables are collected in the upper 1000 m every 1 to 10 days. The database of 9837 vertical profiles collected up to January 2016 is presented and its spatial and temporal coverage is discussed. Each variable is quality controlled with specifically developed procedures and its time series is …

Load Model Verification, Validation And Calibration Framework By Statistical Analysis On Field Data, Xiangqing Jiao, Yuan Liao, Thai Nguyen

Electrical and Computer Engineering Faculty Publications

Accurate load models are critical for power system analysis and operation. A large amount of research work has been done on load modeling. Most of the existing research focuses on developing load models, while little has been done on developing formal load model verification and validation (V&V) methodologies or procedures. Most of the existing load model validation is based on qualitative rather than quantitative analysis. In addition, not all aspects of model V&V problem have been addressed by the existing approaches. To complement the existing methods, this paper proposes a novel load model verification and validation framework that can systematically …

Clinical Evaluation Of The Cepheid Xpert® Tv Assay For Detection Of Trichomonas Vaginalis With Prospectively Collected Female And Male Specimens., Jane R Schwebke, C A Gaydos, T Davis, J Marrazzo, D Furgerson, S N Taylor, B Smith, L H Bachmann, R Ackerman, T Spurrell, D Ferris, C A Burnham, H Reno, J Lebed, D Eisenberg, P Kerndt, S Philip, J Jordan, N Quigley

Epidemiology Faculty Publications

Trichomoniasis is the most prevalent curable sexually transmitted disease (STD). It has been associated with preterm birth and acquisition/transmission of HIV. Recently, nucleic acid amplification tests (NAAT) have been FDA-cleared in the United States for detection of Trichomonas vaginalis (TV) in specimens from both women and men. This current study reports the results of a multicenter study recently conducted using the Xpert TV Assay to test specimens from both men and women. On-demand results were available in as little as 40 minutes for positive specimens. A total of 1867 women and 4791 men were eligible for inclusion in the analysis. …

Lower–Middle Pennsylvanian Strata In The North American Midcontinent Record The Interplay Between Erosional Unroofing Of The Appalachians And Eustatic Sea-Level Rise, J.K. Kissock, E. S. Finzel, D. H. Malone, J. P. Craddock

Faculty Publications-- Geography, Geology, and the Environment

Morrowan, Atokan, and Desmoinesian (Lower–Middle Pennsylvanian) clastic strata in the Forest City (Iowa, northwest Missouri, eastern Nebraska, and Kansas) and Illinois Basins on the North American midcontinent record the interaction between fluctuations in eustatic sea-level and major tectonic events. One of three major Paleozoic eustatic sea-level lows occurred near the Mississippian/Pennsylvanian boundary and was followed by a eustatic rise that continued into Late Pennsylvanian time. Alleghenian mountain building that is linked to the creation of the Pangean supercontinent also began during latest Mississippian time and continued until latest Pennsylvanian or earliest Permian time. Detrital-zircon geochronology and stratigraphic descriptions allow reconstruction …

Facilitating Student Engagement Research: A Historical Analogy For Understanding And Applying Naturalistic Inquiry, Lane G. Perry Iii, April Perry

Journal of Research Initiatives

This paper offers a historical theoretical discussion and practical perspective on the qualitative paradigm of inquiry referred to as Naturalistic Inquiry (Lincoln & Guba, 1985). Moreover, it endeavors to demonstrate the paradigm’s versatility and usefulness when attempting to illuminate phenomena that specifically occur when students experience and interact with engaging, innovative, and experientially based pedagogies (e.g., service-learning, work-integrated learning, community-based learning). This paper presents and paradigmatically supports the researchers’ worldview through a logical primacy and discussion of ontological, epistemological, axiological, and methodological perspectives (Guba & Lincoln, 2001). Following this, Naturalistic Inquiry is identified as a paradigm of inquiry that aligns …

Measurement Of The Multi-Tev Neutrino Interaction Cross-Section With Icecube Using Earth Absorption, Karen Andeen, The Icecube Collaboration

Physics Faculty Research and Publications

Neutrinos interact only very weakly, so they are extremely penetrating. The theoretical neutrino–nucleon interaction cross-section, however, increases with increasing neutrino energy, and neutrinos with energies above 40 teraelectronvolts (TeV) are expected to be absorbed as they pass through the Earth. Experimentally, the cross-section has been determined only at the relatively low energies (below 0.4 TeV) that are available at neutrino beams from accelerators^1,2. Here we report a measurement of neutrino absorption by the Earth using a sample of 10,784 energetic upward-going neutrino-induced muons. The flux of high-energy neutrinos transiting long paths through the Earth is attenuated compared to …

Bioinformatic And Biophysical Analyses Of Proteins, Jonathan Catazaro

Department of Chemistry: Dissertations, Theses, and Student Research

The prevailing dogma in structural genomics is the existence of a strong correlation between protein sequence, structure, and biological function. Proteins with high sequence similarity typically have a similar, if not the same, structure and function. In many cases this logic can fail due to distantly related proteins having very low sequence similarity, a lack of a representative structure, structural novelty, or the absence of a characterized function. Further, the paradigm fails to account for dynamics, which have a significant effect on structural stability and enzymatic efficacy.

Nuclear magnetic resonance (NMR) spectroscopy is uniquely capable of solving the structure, assisting …

Bare Aluminum Oxidation, R. Steven Turley

Faculty Publications

This paper computes the oxidation rate of bare evaporated aluminum thin films under high vacuum conditions and exposed to air.

Physical Properties Of Faint Meteors Through High-Resolution Observations, Dilini Subasinghe

Electronic Thesis and Dissertation Repository

Small, faint meteors (with masses between 10^-7 and 10^-4 kg) were once part of an asteroid or comet, and collide with Earth's atmosphere daily. Studying meteors is an effective way to survey the physical properties of their parent bodies. Meteor light curves and orbital information is easily obtained from wide-field observations, from which meteoroid structure can be inferred through meteoroid ablation modelling. A high-resolution narrow-field camera can provide much more detail about the poorly understood ablation processes and physical properties of the meteoroid. The goal of this thesis is to better understand the physical properties of meteors using …

Tunable Copper Complexes For Sustainable Photocatalysis, David Kline

Posters-at-the-Capitol

Photoredox catalysis has direct applications in sustainable chemistry and thus an immense impact on our environment. With the ability to harness energy directly from the sun to catalyze useful chemical reactions, photocatalysts can help to eliminate the need for harsh reaction conditions and reduce generation of hazardous chemical waste. Photocatalysts based on Earth-abundant metals such as copper have recently emerged as sustainable alternatives to rare-earth metals including iridium and ruthenium, which are no longer required for many photocatalyzed chemical transformations.

Cave Monitoring In The Béke And Baradla Caves (Northeastern Hungary): Implications For The Conditions For The Formation Cave Carbonates, György Czuppon, Attila Demény, Szabolcs Leél-Őssy, Mihály Óvari, Mihály Molnár, József Stieber, Klaudia Kiss, Krisztina Kármán, Gergely Surányi, László Haszpra

International Journal of Speleology

In order to use speleothems in the reconstruction of past climate and environmental changes it is necessary to understand the environmental and hydrological processes that determine the physico-chemical conditions of carbonate precipitation and hence speleothem formation. Therefore, in this study an extended monitoring program was conducted in the Béke and Baradla caves located in the Aggtelek region (Northeastern Hungary). The studied caves are rich in speleothem and flowstone occurrences with great potential for paleoclimatology studies. The monitoring activity included measurements of atmospheric and cave temperatures, CO₂ concentration in cave air, as well as chemical and isotopic compositions of water …

Tracking You Through Dns Traffic: Linking User Sessions By Clustering With Dirichlet Mixture Model, Mingxuan Sun, Junjie Zhang, Guangyue Xu, Dae Wook Kim

Computer Science and Engineering Faculty Publications

The Domain Name System (DNS), which does not encrypt domain names such as "bank.us" and "dentalcare.com", commonly accurately reflects the specific network services. Therefore, DNS-based behavioral analysis is extremely attractive for many applications such as forensics investigation and online advertisement. Traditionally, a user can be trivially and uniquely identified by the device’s IP address if it is static (i.e., a desktop or a laptop). As more and more wireless and mobile devices are deeply ingrained in our lives and the dynamic IP address such as DHCP has been widely applied, it becomes almost impossible to use one IP address to …

What Is Not Where: The Challenge Of Integrating Spatial Representations Into Deep Learning Architectures, John D. Kelleher, Simon Dobnik

Books/Book chapters

This paper examines to what degree current deep learning architectures for image caption generation capture spatial lan- guage. On the basis of the evaluation of examples of generated captions from the literature we argue that systems capture what objects are in the image data but not where these objects are located: the cap- tions generated by these systems are the output of a language model conditioned on the output of an object detector that cannot capture fine-grained location information. Although language models provide useful knowledge for image captions, we argue that deep learning image captioning architectures should also model geometric …

A Spatial Collaboration: Building A Multi-Institution Geospatial Data Discovery Portal, Mara Blake, Karen Majewicz, Ryan Mattke, Kathleen W. Weessies

Collaborative Librarianship

As academic education and research increasingly take advantage of geospatial data and methodologies, we see a corresponding exponential growth in the number of available geospatial resources in the form of GIS datasets and scanned historical maps. However, users can experience difficulty finding these resources due to the unconnected multitude of platforms and clearinghouses that host them. Additionally, the resources are not always well described with web semantic metadata that facilitates discovery. In response to this challenge, The Big Ten Academic Alliance Geospatial Data Project began in 2015 to provide discoverability, facilitate access, and connect scholars to geospatial resources. Our project …

No Evidence For Trace Metal Limitation On Anaerobic Carbon Mineralization In Three Peatland Soils, Jason K. Keller, Jillian Wade

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Peatlands store roughly one-third of the terrestrial soil carbon and release the potent greenhouse gas methane (CH₄) to the atmosphere, making these wetlands among the most important ecosystems in the global carbon cycle. Despite their importance, the controls of anaerobic decomposition of organic matter to carbon dioxide (CO₂) and CH₄ within peatlands are not well understood. It is known, however, that the enzymes responsible for CH₄ production require cobalt, iron and nickel, and there is a growing appreciation for the potential role of trace metal limitation in anaerobic decomposition. To explore the possibility of …

Room Temperature Tunneling Switches And Methods Of Making And Using The Same, Yoke Khin Yap

Michigan Tech Patents

The tunneling channel of a field effect transistor comprising a plurality of tunneling elements contacting a channel substrate. Applying a source-drain voltage of greater than a turn-on voltage produces a source-drain current of greater than about 10 pA. Applying a source-drain voltage of less than a turn-on voltage produces a source-drain current of less than about 10 pA. The turn-on voltage at room temperature is between about 0.1V and about 40V.

Modular Mechanistic Networks: On Bridging Mechanistic And Phenomenological Models With Deep Neural Networks In Natural Language Processing, Simon Dobnik, John D. Kelleher

Books/Book chapters

Natural language processing (NLP) can be done using either top-down (theory driven) and bottom-up (data driven) approaches, which we call mechanistic and phenomenological respectively. The approaches are frequently considered to stand in opposition to each other. Examining some recent approaches in deep learning we argue that deep neural networks incorporate both perspectives and, furthermore, that leveraging this aspect of deep learning may help in solving complex problems within language technology, such as modelling language and perception in the domain of spatial cognition.

Hypervolatiles In A Jupiter-Family Comet: Observations Of 45p/Honda–Mrkos–Pajdušáková Using Ishell At The Nasa-Irtf, Michael Disanti, Boncho Bonev, Neil Russo, Ronald Vervack, Erika Gibb, Nathan Roth, Adam Mckay, Hideyo Kawakita, Lori Feaga, Harold Weaver

Physics Faculty Works

We used the new high spectral resolution cross-dispersed facility spectrograph, iSHELL, at the NASA Infrared Telescope Facility on Maunakea, HI, to observe Jupiter-family comet (JFC) 45P/Honda–Mrkos–Pajdušáková. We report water production rates, as well as production rates and abundance ratios relative to H2O, for eight trace parent molecules (native ices), CO, CH4, H2CO, CH3OH, HCN, NH3, C2H2, and C2H6, on 2 days spanning UT 2017 January 6/7 and 7/8, shortly following perihelion. Trace species were measured simultaneously with H2O and/or OH prompt emission, a proxy for H2O production, thereby providing a robust and consistent means of establishing the native ice composition …

Toward Improving Metalloenzyme Inhibitor Design: A Thermodynamic Study Of Small Molecule Interactions With Copper(Ii), Cobalt(Ii) And Manganese(Ii), Fatimah Aldakheel

College of Science and Health Theses and Dissertations

This work aimed at understanding the interactions of 1) three physiologically relevant transition metal ions copper(II), cobalt(II) and manganese(II) with five tri- or tetra-dentate metal chelators (ligand or L) and 2) the resulting ML complexes with two known metalloenzyme inhibitors, 8-hydroxyquinoline (8-HQ) and acetohydroxamic acid (AHA). The ultimate goal of the work was to identify ligands that can form enzyme active site M²⁺ structural mimetics capable of interacting with metalloenzyme active site inhibitors. The ligands studied were N-(2-(1-methylimidazolyl)methyl)iminodiacetic acid (DA2Im), nitrilotriacetic acid (NTA), tris(2-aminoethyl)amine (TREN), tris(2-pyridylmethyl)amine (TPA), and bis(2-picolyl)amine (BPA) and they were chosen to mimic the coordination environment …