Physical Sciences and Mathematics Commons^™

Assessing Ecosystem Services From The Forestry-Based Reclamation Of Surface Mined Areas In The North Fork Of The Kentucky River Watershed, Kumari Gurung, Jian Yang, Lei Fang

Forestry and Natural Resources Faculty Publications

Surface mining is a major driver of land use land cover (LULC) change in many mountainous areas such as the Appalachian region. Typical reclamation practices often result in land cover dominated by grass and shrubs. Assessing ecosystem services that can be obtained from a forest landscape may help policy-makers and other stakeholders fully understand the benefits of forestry-based reclamation (FRA). The objectives of this study are to (1) identify how surface mining and reclamation changed the LULC of a watershed encompassing the north fork of the Kentucky River, (2) assess the biophysical value of four major ecosystem services under the …

Analysis Of Covariance (Ancova) In Randomized Trials: More Precision, Less Conditional Bias, And Valid Confidence Intervals, Without Model Assumptions, Bingkai Wang, Elizabeth Ogburn, Michael Rosenblum

Johns Hopkins University, Dept. of Biostatistics Working Papers

Covariate adjustment" in the randomized trial context refers to an estimator of the average treatment effect that adjusts for chance imbalances between study arms in baseline variables (called “covariates"). The baseline variables could include, e.g., age, sex, disease severity, and biomarkers. According to two surveys of clinical trial reports, there is confusion about the statistical properties of covariate adjustment. We focus on the ANCOVA estimator, which involves fitting a linear model for the outcome given the treatment arm and baseline variables, and trials with equal probability of assignment to treatment and control. We prove the following new (to the best …

Beam-Target Helicity Asymmetry E In K0Λ And K0Σ0 Photoproduction On The Neutron, D. H. Ho, R. A. Schumacher, A. D’Angelo, A. Deur, J. Fleming, C. Hanretty, T. Kageya, F. J. Klein, E. Klempt, M. M. Lowry, H. Lu, V. A. Nikonov, P. Peng, A. M. Sandorfi, A. V. Sarantsev, I. I. Strakovsky, N. K. Walford, X. Wei, R. L. Workman, K. P. Adhikari, S. Adhikari, D. Adikaram, Z. Akbar, J. Ball, L. Barion, M. Bashkanov, C. D. Bass, M. Battaglieri, I. Bedlinskiy, A. S. Biselli, Wesley P. Gohn

Physics and Astronomy Faculty Publications

We report the first measurements of the E beam-target helicity asymmetry for the γ^→ n^→ → K⁰Λ and K⁰Σ⁰ channels in the energy range 1.70 ≤ W ≤ 2.34 GeV. The CLAS system at Jefferson Lab uses a circularly polarized photon beam and a target consisting of longitudinally polarized solid molecular hydrogen deuteride with low background contamination for the measurements. The multivariate analysis method boosted decision trees is used to isolate the reactions of interest. Comparisons with predictions from the KaonMAID, SAID, and Bonn-Gatchina models are presented. These results will help separate the …

Seqothello: Querying Rna-Seq Experiments At Scale, Ye Yu, Jinpeng Liu, Xinan Liu, Yi Zhang, Eamonn Magner, Erik Lehnert, Chen Qian, Jinze Liu

Computer Science Faculty Publications

We present SeqOthello, an ultra-fast and memory-efficient indexing structure to support arbitrary sequence query against large collections of RNA-seq experiments. It takes SeqOthello only 5 min and 19.1 GB memory to conduct a global survey of 11,658 fusion events against 10,113 TCGA Pan-Cancer RNA-seq datasets. The query recovers 92.7% of tier-1 fusions curated by TCGA Fusion Gene Database and reveals 270 novel occurrences, all of which are present as tumor-specific. By providing a reference-free, alignment-free, and parameter-free sequence search system, SeqOthello will enable large-scale integrative studies using sequence-level data, an undertaking not previously practicable for many individual labs.

A Global Version Of A Classical Result Of Joachimstha, Brendan Guilfoyle, Wilhelm Klingenberg

Publications

A classical result attributed to Joachimsthal in 1846 states that if two surfaces intersect with constant angle along a line of curvature of one surface, then the curve of intersection is also a line of curvature of the other surface. In this note we prove the following global analogue of this result. Suppose that two closed convex surfaces intersect with constant angle along a curve that is not umbilic in either surface. We prove that the principal foliations of the two surfaces along the curve are either both orientable, or both nonorientable. We prove this by characterizing the constant angle …

Modern And Paleoecological Perspectives On A Terrestrial-Marine Linkage In The Falkland Islands, Dulcinea V. Groff

Electronic Theses and Dissertations

The Falkland Islands are a biodiversity hotspot in the South Atlantic Ocean, with some of the world’s most important populations of seabirds and seals. The impact of climate change on these marine populations and their coastal breeding habitat in the Falklands is unknown. Coastal grasslands of Poa flabellata (tussac grass) form critical breeding habitat for wildlife, but have been heavily degraded by the introduction of livestock in the 17^th century. This dissertation investigates the impacts of global change (climate change, grazing) on P. flabellata and its sensitivity to the fecal nutrient subsidies provided by marine wildlife. Chapter 1 provides …

Mario Kart 8: A Case Study In Total Internal Reflection, Robert Polak, Vincent Acuesta, Jonathon Cirone, Matthew B. Conway, Joseph Summers, Lana Tinawi

Physics: Faculty Publications and Other Works

No abstract provided.

Raman Spectroscopy Detects Biochemical Changes Due To Different Cell Culture Environments In Live Cells In Vitro, Mahmoud Gargotti, Esen Efeoglu, Hugh Byrne, Alan Casey

Articles

The in vitro cell culture environment can impact on cell biochemistry and cell cycle. The manifestation of such substrate-induced changes in cell cycle in the Raman microspectroscopic profiles of cell cultures is investigated at the level of nucleolus, nucleus and cytoplasm. HeLa immortalised human cervical cells and HaCaT dermal cells were cultured on three different substrates, conventional polystyrene cell culture dishes, CaF2 slides as a commonly used Raman substrate, and glass slides coated with Collagen Rat Tail, as a mimic of the extra cellular matrix (ECM) environment. A cell cycle study, based on percentage DNA content, as determined using Propidium …

Influence Of Salinity, Sunlight, And Sediment On The Toxicity Of Pesticides In Three Non-Target Organisms, Emily Noelle Vebrosky

LSU Doctoral Dissertations

Pesticides used in the United States must undergo registration by the United States Environmental Protection Agency (USEPA), after a multitude of analyses ranging from environmental fate to aquatic toxicological impacts to human risk exposure. Testing varies for each chemical, some requiring more testing than others. In many cases, environmental factors are restricted in the analysis of chemical behavior and organismal testing is limited to larvae. Many pesticides are formulated to breakdown in the environment by means of photolysis, hydrolysis, or oxidation, either to ensure low-persistence, limited transport, or to form the active ingredient (pro-pesticides). Environmental influences on chemical behaviors include …

Numerical Investigation Of Transition Between Free Surface Flow And Pressurized Flow For A Circular Pipe Flowing Full Upstream, Tanjina Afrin, Abdul A. Khan, Nigel B. Kaye

S.C. Water Resources Conference

The South Carolina Water Resources Conference (SCWRC) provides an integrated forum for discussion of water policies, research projects and water management in order to prepare for and meet the growing challenge of providing water resources to sustain and grow South Carolina’s economy, while preserving our natural resources.

Ecology And Evolution Of Dispersal In Metapopulations, Jingjing Xu

Electronic Thesis and Dissertation Repository

Dispersal plays a key role in the persistence of metapopulations, as the balance between local extinction and colonization is affected by dispersal. Herein, I present three pieces of work related to dispersal. The first two are devoted to the ecological aspect of delayed dispersal in metapopulations. The first one focuses on how dispersal may disrupt the social structure on patches from which dispersers depart. Examinations of bifurcation diagrams of the dynamical system show a metapopulation will, in general, be either in the state of global extinction or persistence, and dispersal only has a limited effect on metapopulation persistence. The second …

Separating Markup From Text, Ronald I. Greenberg, George K. Thiruvathukal

George K. Thiruvathukal

As more and more online versions of Humanities texts are created, it is becoming commonplace to embed elaborate formatting, for example, through the use of HTML. But this can interfere with computerized analyses of the original text. While it may seem, at first, straightforward to simply strip markup from text, this is not the reality. Many digital texts add things that appear to be legitimate content according to the markup syntax, for example, line numbers, and even apart from this issue, existing tools for stripping markup produce inconsistent results. Apart from adopting and enforcing strict conventions for adding markup to …

A Near-Infrared Fluorescent Probe Based On A Fret Rhodamine Donor Linked To A Cyanine Acceptor For Sensitive Detection Of Intracellular Ph Alternations, Yibin Zhang, Jianheng Bi, Shuai Xia, Wafa Mazi, Shulin Wan, Logan Mikesell, Rudy Luck, Haiying Liu

Department of Chemistry Publications

A fluorescence resonance energy transfer (FRET)-based near-infrared fluorescent probe (B⁺) for double-checked sensitive detection of intracellular pH changes has been synthesized by binding a near-infrared rhodamine donor to a near-infrared cyanine acceptor through robust C-N bonds via a nucleophilic substitution reaction. To demonstrate the double-checked advantages of probe B⁺, a near-infrared probe (A) was also prepared by modification of a near-infrared rhodamine dye with ethylenediamine to produce a closed spirolactam residue. Under basic conditions, probe B⁺ shows only weak fluorescence from the cyanine acceptor while probe A displays nonfluorescence due to retention of the closed …

Big Oil And Climate Change Denial, David Schelhaas

Faculty Work Comprehensive List

"One of the Alliance’s most basic commitments is to free market economic development fueled by coal and oil that will, as they see it, lift the poor out of poverty."

Posting about the philosophy of the Cornwall Alliance for the Stewardship of Creation from In All Things - an online journal for critical reflection on faith, culture, art, and every ordinary-yet-graced square inch of God’s creation.

https://inallthings.org/big-oil-and-climate-change-denial/

Effects Of Red Clover Isoflavones On Tall Fescue Seed Fermentation And Microbial Populations In Vitro, Emily A. Melchior, Jason K. Smith, Liesel G. Schneider, J. Travis Mulliniks, Gary E. Bates, Zachary D. Mcfarlane, Michael D. Flythe, James L. Klotz, Jack P. Goodman, Huihua Ji, Phillip R. Myer

Plant and Soil Sciences Faculty Publications

Negative impacts of endophyte-infected Lolium arundinaceum (Darbyshire) (tall fescue) are responsible for over $2 billion in losses to livestock producers annually. While the influence of endophyte-infected tall fescue has been studied for decades, mitigation methods have not been clearly elucidated. Isoflavones found in Trifolium pratense (red clover) have been the subject of recent research regarding tall fescue toxicosis mitigation. Therefore, the aim of this study was to determine the effect of ergovaline and red clover isoflavones on rumen microbial populations, fiber degradation, and volatile fatty acids (VFA) in an in vitro system. Using a dose of 1.10 mg × L …

The Santa Clara, 2018-10-18, Santa Clara University

The Santa Clara

No abstract provided.

Global Warming And The Sweetness Of Life : A Tar Sands Tale | Matt Hern, Liberal Arts Division, History, Philosophy, + The Social Sciences Department, Ncss Graduate Program

Nature-Culture-Sustainability Studies (NCSS) Lectures

Lecture, October 18, 2018. 6:15 pm, Room 521, College Building. The Liberal Arts division and the department of History, Philosophy + the Social Sciences welcome writer/activist Matt Hern for a talk called Global Warming and the Sweetness of Life: A Tar Sands Tale. Hern is co-author of the recent book Global Warming and the Sweetness of Life (MIT, 2018), which charts multiple trips through the tar sands of northern Alberta and documents the effects of global warming on indigenous communities. Hern and co-creators Am Johal and Joe Sacco offer new forms of thinking about global warming and ecological perils in …

The Discovery Of A Gravitationally Lensed Supernova Ia At Redshift 2.22, David Rubin, Brian Hayden, Xiaosheng Huang, Greg Aldering, R Amanullah, K Barbary, K Boone, M Brodwin, S E. Deustua, S Dixon, P Eisenhardt, A S. Fruchter, A H. Gonzalez, A Goobar, R R. Gupta, I Hook, M. James Jee, A G. Kim, M Kowalski, C Lidman, E V. Linder, K Luther, J Nordin, R Pain, Saul Perlmutter, Z Raha, M Rigault, P Ruiz-Lapuente, C Saunders, C Sofiatti, A L. Spadafora, S A. Stanford, D Stern, N Suzuki, S C. Williams

Physics and Astronomy

We present the discovery and measurements of a gravitationally lensed supernova (SN) behind the galaxy cluster MOO J1014+0038. Based on multi-band Hubble Space Telescope and Very Large Telescope (VLT) photometry of the supernova, and VLT spectroscopy of the host galaxy, we find a 97.5% probability that this SN is a SN Ia, and a 2.5% chance of a CC SN. Our typing algorithm combines the shape and color of the light curve with the expected rates of each SN type in the host galaxy. With a redshift of 2.2216, this is the highest redshift SN Ia discovered with a spectroscopic …

Metallo-Polyelectrolytes As A Class Of Ionic Macromolecules For Functional Materials, Tianyu Zhu, Ye Sha, Jing Yan, Parasmani Pageni, Md Anisur Rahman, Yi Yan, Chuanbing Tang

Faculty Publications

The fields of soft polymers and macromolecular sciences have enjoyed a unique combination of metals and organic frameworks in the name of metallopolymers or organometallic polymers. When metallopolymers carry charged groups, they form a class of metal-containing polyelectrolytes or metallo-polyelectrolytes. This review identifies the unique properties and functions of metallo-polyelectrolytes compared with conventional organo-polyelectrolytes, in the hope of shedding light on the formation of functional materials with intriguing applications and potential benefits. It concludes with a critical perspective on the challenges and hurdles for metallo-polyelectrolytes, especially experimental quantitative analysis and theoretical modeling of ionic binding.

Groups Generated By Automata Arising From Transformations Of The Boundaries Of Rooted Trees, Elsayed Ahmed

USF Tampa Graduate Theses and Dissertations

In this dissertation we study groups of automorphisms of rooted trees arising from the transformations of the boundaries of these trees. The boundary of every regular rooted tree can be endowed with various algebraic structures. The transformations of these algebraic structures under certain conditions induce endomorphisms or automorphisms of the tree itself that can be described using the language of Mealy automata. This connection can be used to study boundarytransformations using the propertiesof the induced endomorphisms, or vice versa.

We concentrate on two ways to interpret the boundary of the rooted d-regular tree. In the first approach discussed in detail …

A Novel Shortwave Infrared Proximal Sensing Approach To Quantify The Water Stability Of Soil Aggregates, Azadeh Gholoubi, Hojat Emami, Scott B. Jones, Markus Tuller

Plants, Soils, and Climate Faculty Publications

Soil structure and aggregate stability (AS) are critical soil properties affecting water infiltration, root growth, and resistance to soil and wind erosion. Changes in AS may be early indicators of soil degradation, pointing to low organic matter (OM) content, reduced biological activity, or poor nutrient cycling. Hence, efficient and reliable AS measurement techniques are essential for detection, management, and remediation of degraded soil resources. Here we quantify soil AS by developing a novel proximal sensing technique based on shortwave infrared (SWIR) reflectance measurements. The novel approach is similar to the well-documented high energy moisture characteristic (HEMC) method, which yields a …

The Extended Planetary Nebula Spectrograph (Epn.S) Early-Type Galaxy Survey: The Kinematic Diversity Of Stellar Halos And The Relation Between Halo Transition Scale And Stellar Mass, C. Pulsoni, O. Gerhard, M. Arnaboldi, L. Coccato, A. Longobardi, N. Napolitano, E. Moylan, C. Narayan, V. Gupta, A. Burkert, M. Capaccioli, A. Chies-Santos, A. Cortesi, K. Freeman, K. Kuijken, M. Merrifield, Aaron Romanowsky, C. Tortora

Faculty Research, Scholarly, and Creative Activity

Context. In the hierarchical two-phase formation scenario, the halos of early type galaxies (ETGs) are expected to have different physical properties from the galaxies’ central regions.Aims. The ePN.S survey characterizes the kinematic properties of ETG halos using planetary nebulae (PNe) as tracers, overcoming the limitations of absorption line spectroscopy at low surface brightness.Methods. We present two-dimensional velocity and velocity dispersion fields for 33 ETGs, including fast (FRs) and slow rotators (SRs). The velocity fields were reconstructed from the measured PN velocities using an adaptive kernel procedure validated with simulations, and extend to a median of 5.6 effective radii (Re). We …

Group-Lasso Estimation In High-Dimensional Factor Models With Structural Breaks, Yujie Song

Major Papers

In this major paper, we study the influence of structural breaks in the financial market model with high-dimensional data. We present a model which is capable of detecting changes in factor loadings, determining the number of factors and detecting the break date. We consider the case where the break date is both known and unknown and identify the type of instability. For the unknown break date case, we propose a group-LASSO estimator to determine the number of pre- and post-break factors, the break date and the existence of instability of factor loadings when the number of factor is constant. We …

Estimation In High-Dimensional Factor Models With Structural Instabilities, Wen Gao

Major Papers

In this major paper, we use high-dimensional models to analyze macroeconomic data which is in influenced by the break point. In particular, we consider to detect the break point and study the changes of the number of factors and the factor loadings with the structural instability.

Concretely, we propose two factor models which explain the processes of pre- and post- break periods. Then, we consider the break point as known or unknown. In both situations, we derive the shrinkage estimators by minimizing the penalized least square function and calculate the estimators of the numbers of pre- and post- break factors …

Cooperative Planning For Source Water Protection: Targeting Sediment In The Upper Saluda River Watershed, Melanie Ruhlman, Angela Vandelay, Cindy Roper

S.C. Water Resources Conference

The South Carolina Water Resources Conference (SCWRC) provides an integrated forum for discussion of water policies, research projects and water management in order to prepare for and meet the growing challenge of providing water resources to sustain and grow South Carolina’s economy, while preserving our natural resources.

Supporting Coastal Resiliency By Investigating Tidal Reach And Inter-Connected Factors In Coastal Georgia, S. E. Rosenquist, C. J. Hintz

S.C. Water Resources Conference

The South Carolina Water Resources Conference (SCWRC) provides an integrated forum for discussion of water policies, research projects and water management in order to prepare for and meet the growing challenge of providing water resources to sustain and grow South Carolina’s economy, while preserving our natural resources.

Chameleon: A Customizable Language For Teaching Programming Languages, Saverio Perugini, Jack L. Watkin

Saverio Perugini

ChAmElEoN is a programming language for teaching students the concepts and implementation of computer languages. We describe its syntax and semantics, the educational aspects involved in the implementation of a variety of interpreters for it, its malleability, and student feedback to inspire its use for teaching languages.

Natural Language, Mixed-Initiative Personal Assistant Agents, Joshua W. Buck, Saverio Perugini, Tam W. Nguyen

Saverio Perugini

The increasing popularity and use of personal voice assistant technologies, such as Siri and Google Now, is driving and expanding progress toward the long-term and lofty goal of using artificial intelligence to build human-computer dialog systems capable of understanding natural language. While dialog-based systems such as Siri support utterances communicated through natural language, they are limited in the flexibility they afford to the user in interacting with the system and, thus, support primarily action-requesting and information-seeking tasks. Mixed-initiative interaction, on the other hand, is a flexible interaction technique where the user and the system act as equal participants in an …

An Application Of The Actor Model Of Concurrency In Python: A Euclidean Rhythm Music Sequencer, Daniel P. Prince, Saverio Perugini

Saverio Perugini

We present a real-time sequencer, implementing the Euclidean rhythm algorithm, for creative generation of drum sequences by musicians or producers. We use the Actor model of concurrency to simplify the communication required for interactivity and musical timing, and generator comprehensions and higher-order functions to simplify the implementation of the Euclidean rhythm algorithm. The resulting application sends Musical Instrument Digital Interface (MIDI) data interactively to another application for sound generation.

Developing A Contemporary Operating Systems Course, Saverio Perugini, David J. Wright

Saverio Perugini

The objective of this tutorial presentation is to foster innovation in the teaching of operating systems (os) at the undergraduate level as part of a three-year NSF-funded IUSE (Improving Undergraduate STEM Education) project titled “Engaged Student Learning: Reconceptualizing and Evaluating a Core Computer Science Course for Active Learning and STEM Student Success” (2017–2020).