Physical Sciences and Mathematics Commons^™

A New Model For Simulating Climate Change And Carbon Dynamics In Forested Landscapes, Caren C. Dymond, Robert M. Scheller, Sarah Beukema

Environmental Science and Management Faculty Publications and Presentations

Journal of Ecosystems & Management vol. 13 no. 2 2012 news brief .

Growing Cities Depend On Ecosystem Services, David E. Ervin, Darrell Brown, Heejun Chang, Veronica Dujon, Elise F. Granek, Vivek Shandas, J. Alan Yeakley

Geography Faculty Publications and Presentations

Many studies have documented the growing fragility of a majority of the globe's ecosystems. Policymakers and resource managers often frame such ecosystem challenges as primarily about protecting natural systems in rural areas. However, that conception misses a key part of the story: the rapid growth of urbanizing areas. Home to more than 50 percent of the world's human population for the first time in modern history, urbanizing regions concentrate pressure on ecosystem services, which are necessary to sustain healthy urban living conditions and vibrant commerce. This dramatic urbanization presents both challenges and opportunities for novel ecosystem services management. A transdisciplinary …

Parallel Sorting On A Spatial Computer, Max Orhai, Andrew P. Black

Computer Science Faculty Publications and Presentations

We describe a parallel sort for a spatial computer that requires minimal communication. We show simulations of the sort in 1 and 2 dimensions.

Presentation slides are located below in the Additional Files

Patterns As Objects In Grace, Andrew P. Black, Michael Homer, James Noble, David J. Pearce, Kim B. Bruce

Computer Science Faculty Publications and Presentations

Object orientation and pattern matching are often seen as conflicting approaches to program design. Object oriented programs place type-dependent behaviour inside objects and invoke it via dynamic dispatch, while pattern matching programs place type-dependent behaviour outside data structures and invoke it via multiway conditionals (case statements). Grace is a new, dynamic, object-oriented language designed to support teaching: to this end, Grace needs to support both styles. In this paper we explain how this conflict can be resolved gracefully: by modelling patterns and cases as partial functions, reifying those functions as first-class objects, and then building up complex patterns from simpler …

Shaping The Future Past: Finding History, Creating Identity In The Kwan Hsu Papers, Lisa Chere' Donnelly

Dissertations and Theses

Dr. Kwan Hsu was neither a superstar nor a celebrity. Her name does not come up in conversations about important contributors to her field of biophysics nor is she instantly recognizable for her contributions to Portland State University's international program or the state of Oregon's business ties with China. Yet she was a contributor, a cog-in-the-wheel, at the very least, in all of these areas and more. She was a peripheral member of a well-known Chinese family, but few in the United States know of or perhaps have interest in, but otherwise, she had no great connections or family ties …

Evolved Design Of A Nonlinear Proportional Integral Derivative (Npid) Controller, Shubham Chopra

Dissertations and Theses

This research presents a solution to the problem of tuning a PID controller for a nonlinear system. Many systems in industrial applications use a PID controller to control a plant or the process. Conventional PID controllers work in linear systems but are less effective when the plant or the process is nonlinear because PID controllers cannot adapt the gain parameters as needed. In this research we design a Nonlinear PID (NPID) controller using a fuzzy logic system based on the Mamdani type Fuzzy Inference System to control three different DC motor systems. This fuzzy system is responsible for adapting the …

Community Earth System Model: Implementation, Validation, And Applications, William Christian Porter

Dissertations and Theses

The Community Earth System Model (CESM) is a coupling of five different models which are combined to simulate the dynamic interactions between and within the Earth's atmosphere, ocean, land, land-ice, and sea-ice. In this work, the installation and testing of CESM on Portland State University's Cluster for Climate Change and Aerosol Research (CsAR) is described and documented, and two research applications of the model are performed. First, the improved treatment of cloud microphysics within recent versions of CESM's atmospheric module is applied to an examination of changes in shortwave cloud forcing (SWCF) and results are compared to output from older …

Development And Implementation Of Acoustic Feedback Control For Scanning Probe Microscopy, Rodolfo Fernandez Rodriguez

Dissertations and Theses

A remote-sensing acoustic method for implementing position control feedback in Scanning Probe Microscopy (SPM) is presented. The capabilities of this feedback control using the new Whispering Gallery Acoustic Sensing (WGAS) method is demonstrated in a Shear-force Scanning Probe Microscope that uses a sharp probe attached to a piezoelectric Quartz Tuning Fork (QTF) firmly mounted on the microscope's frame. As the QTF is electrically driven its mechanical response reaches the SPM frame which then acts as a resonant cavity producing acoustic modes measured with an acoustic sensor strategically placed on the SPM head. The novelty of the WGAS resides in using …

A Systems Approach To Ecological Economic Models Developed Progressively In Three Interwoven Articles, Takuro Uehara

Dissertations and Theses

My dissertation develops and analyzes ecological economic models to study the complex dynamics of an ecological economic system (EES) and investigate various conditions and measures which can sustain a developing economy over the long term in view of resilience and sustainability. Because of the intrinsic complexity of the system, I take a systems approach, using economics as the foundation for the basic structure of an ecological economic model, and system dynamics as the method to build and analyze such a complex ecological economic model. Throughout my dissertation, the model developed by Brander and Taylor (1998) is adopted as a baseline …

Climate Change Effects And Water Vulnerability In The Molalla Pudding River Basin, Oregon, Usa, Susan Amelia Wherry

Dissertations and Theses

Water management plans are typically developed using historical data records and historical return periods for extreme events, such as floods or droughts. Since these analyses of return periods typically assume a certain degree of stationarity (constant mean, standard deviation, distribution) in hydrologic variables, the potential future impacts of climate change are excluded. In developing water management plans, predicted changes to climate variables should be considered to evaluate the degree of non-stationarity that may exist in the future. In this way, regions most sensitive to climate change can be identified and managed appropriately. This study performed such a task by using …

Late Pleistocene And Holocene Aged Glacial And Climatic Reconstructions In The Goat Rocks Wilderness, Washington, United States, Joshua Andrews Heard

Dissertations and Theses

Eight glaciers, covering an area of 1.63 km2, reside on the northern and northeastern slopes of the Goat Rocks tallest peaks in the Cascades of central Washington. At least three glacial stands occurred downstream from these glaciers. Closest to modern glacier termini are Little Ice Age (LIA) moraines that were deposited between 1870 and 1899 AD, according to the lichenometric analysis. They are characterized by sharp, minimally eroded crests, little to no soil cover, and minimal vegetation cover. Glacier reconstructions indicate that LIA glaciers covered 8.29 km2, 76% more area than modern ice coverage. The average LIA equilibrium line altitude …

Scale Invariant Object Recognition Using Cortical Computational Models And A Robotic Platform, Danny Voils

Dissertations and Theses

This paper proposes an end-to-end, scale invariant, visual object recognition system, composed of computational components that mimic the cortex in the brain. The system uses a two stage process. The first stage is a filter that extracts scale invariant features from the visual field. The second stage uses inference based spacio-temporal analysis of these features to identify objects in the visual field. The proposed model combines Numenta's Hierarchical Temporal Memory (HTM), with HMAX developed by MIT's Brain and Cognitive Science Department. While these two biologically inspired paradigms are based on what is known about the visual cortex, HTM and HMAX …

Fundamental Properties Of Functional Zinc Oxide Nanowires Obtained By Electrochemical Method And Their Device Applications, Athavan Nadarajah

Dissertations and Theses

We report on the fundamental properties and device applications of semiconductor nanoparticles. ZnO nanowires and CdSe quantum dots were used, prepared, characterized, and assembled into novel light-emitting diodes and solar cells. ZnO nanowire films were grown electrochemically using aqueous soluble chloride-based electrolytes as precursors at temperatures below 90° C. Dopants were added to the electrolyte in the form of chloride compounds, which are AlCl₃, CoCl₂, CuCl₂, and MnCl₂. The optical, magnetic, and structural properties of undoped and transition-metal-ion doped ZnO nanowires were explored. Our results indicate that the as-grown nanowire structures have …

Measurement And Modeling Of Passive Surface Mount Devices On Fr4 Substrates, Rahulkumar Sadanand Koche

Dissertations and Theses

Passive components like resistors, capacitors and inductors are used in every electronic system. These are the very basic components which affect the system performance at higher frequencies and it is necessary to understand and model the behavior of these components in a very accurate manner. This work focuses on utilizing Printed Circuit Board (PCB) test boards, or fixtures, made of FR4 for characterizing Surface Mount Device (SMD) components. Agilent's Advanced Design System (ADS) microwave circuit simulation software was used for designing the microstrip transmission lines as well as for generating the layout for manufacturing of the PCB. SMD resistors, capacitors …

Memristor-Based Reservoir Computing, Manjari S. Kulkarni

Dissertations and Theses

In today's nanoscale era, scaling down to even smaller feature sizes poses a significant challenge in the device fabrication, the circuit, and the system design and integration. On the other hand, nanoscale technology has also led to novel materials and devices with unique properties. The memristor is one such emergent nanoscale device that exhibits non-linear current-voltage characteristics and has an inherent memory property, i.e., its current state depends on the past. Both the non-linear and the memory property of memristors have the potential to enable solving spatial and temporal pattern recognition tasks in radically different ways from traditional binary transistor-based …

Electrokinetic Properties Of Lipid And Sarcoplasmic Reticulum Membranes In Aqueous Electrolyte And In The Presence Of Lipophilic Ions, Laura Elizabeth Satterfield

Dissertations and Theses

The purpose of this study is the characterization of the membrane-water interfaces of both sarcoplasmic reticulum membrane (SR) and charged lipid bilayers under varied properties of the surrounding aqueous solution. In this work we studied the electrokinetic properties of liposomes and SR vesicles as well as the interaction of lipophilic ions with these membranes. The study of electrokinetic properties is based on the measurements of electrophoretic mobility of SR membrane vesicles and PC/PG liposomes. Electrophoretic mobility of SR vesicles was measured as a function of ionic strength for six pH values (pH 4.0, 4.7, 5.0, 6.0, 7.5, and 9.0). Electrophoretic …

On The Effect Of Heterogeneity On The Dynamics And Performance Of Dynamical Networks, Alireza Goudarzi

Dissertations and Theses

The high cost of processor fabrication plants and approaching physical limits have started a new wave research in alternative computing paradigms. As an alternative to the top-down manufactured silicon-based computers, research in computing using natural and physical system directly has recently gained a great deal of interest. A branch of this research promotes the idea that any physical system with sufficiently complex dynamics is able to perform computation. The power of networks in representing complex interactions between many parts make them a suitable choice for modeling physical systems. Many studies used networks with a homogeneous structure to describe the computational …

The Basic Scheme For The Evaluation Of Functional Logic Programs, Arthur Peters

Dissertations and Theses

Functional logic languages provide a powerful programming paradigm combining the features of functional languages and logic languages. However, current implementations of functional logic languages are complex, slow, or both. This thesis presents a scheme, called the Basic Scheme, for compiling and executing functional logic languages based on non-deterministic graph rewriting. This thesis also describes the implementation and optimization of a prototype of the Basic Scheme. The prototype is simple and performs well compared to other current implementations.

Spontaneous Cooperative Assembly Of Replicative Catalytic Rna Systems, Nilesh Vaidya

Dissertations and Theses

The RNA World hypothesis proposes a period of time during the origins of life in which RNA molecules were the only source of both genotypes and phenotypes. Although a vast amount of evidence has been obtained in support of this hypothesis, a few critical demonstrations are lacking. A most crucial one is a demonstration of self-replication of RNA molecule from prebiotic soup. Previously in the Lehman laboratory, it has been demonstrated that a 198-nucleotide molecule derived from the Azoarcus group I intron can self-assemble from up to four fragments of RNA via recombination. Furthermore, the covalent full-length molecules are catalytically …

Distributed Solar Photovoltaic Grid Integration System : A Case Study For Performance, Ming Shen

Dissertations and Theses

The needs to the sustainable development of electricity, energy efficiency improvement, and environment pollution reduction have favored the development of distributed generation (DG). But the problems come with increasing DG penetration in distribution networks. This thesis presents the Solar Energy Grid Integration System (SEGIS) Stage III project done by Portland General Electric (PGE), Advanced Energy, Sandia National Lab on a PGE selected distribution feeder. The feeder has six monitored commercial solar PV systems connected. The total power output from the PV systems has the potential to reach 30% of the feeder load. The author analyzes the performance of the solar …

Biosynthesis Of Marineosin, A Spiroaminal Undecylprodiginine Natural Product, Shaimaa Mohamed Salem

Dissertations and Theses

Marineosins A and B are two spiroaminal-ring containing tripyrrole compounds isolated from the marine actinomycete, Streptomyces CNQ-617, and were found to possess potent and selective cytotoxic activity against leukemia and melanoma. Marineosins belong to the prodiginines class of natural products, examples of which are undecylprodiginine and streptorubin B. Unlike marineosins, prodiginines structures are characterized by the presence of fully conjugated tripyrrole nucleus linked to an alkyl chain (that lacks any oxygen). Cyclic prodiginines arise from an oxidative cyclization of the alkyl chain onto the tripyrrole, a step catalyzed by Rieske-oxygenase like enzymes such as RedG. The biosynthesis of prodiginines is …

A Data-Descriptive Feedback Framework For Data Stream Management Systems, Rafael J. Fernández Moctezuma

Dissertations and Theses

Data Stream Management Systems (DSMSs) provide support for continuous query evaluation over data streams. Data streams provide processing challenges due to their unbounded nature and varying characteristics, such as rate and density fluctuations. DSMSs need to adapt stream processing to these changes within certain constraints, such as available computational resources and minimum latency requirements in producing results. The proposed research develops an inter-operator feedback framework, where opportunities for run-time adaptation of stream processing are expressed in terms of descriptions of substreams and actions applicable to the substreams, called feedback punctuations. Both the discovery of adaptation opportunities and the exploitation of …

Understanding The Emission From Semiconductor Nanoparticles, Beth Ann Manhat

Dissertations and Theses

This dissertation describes the synthesis and characterization of fluorescent semiconductor nanoparticles (NPs) in order to optimize their biomedical utility for imaging and sensing applications. While both direct and indirect bandgap semiconductor NPs have been studied, control over their emission properties vary. Quantum confinement (QC), which primarily controls the emission wavelength of nanosized semiconductors, dictates that as the size of semiconductor NPs decrease, the magnitude of the bandgap increases, resulting in changes in the observed emission wavelength: smaller NPs have a larger bandgap, and thus a bluer emission. However, surface, interfacial, or shell defects can act as non-radiative or radiative recombination …

Groundwater Surface Trends In The North Florence Dunal Aquifer, Oregon Coast, Usa, Sarah Rebecca Doliber

Dissertations and Theses

The North Florence Dunal Aquifer is the only feasible source for drinking water for the coastal city of Florence, Oregon and Florence's Urban Growth Boundary. High infiltration rates and a shallow groundwater table leave the aquifer highly susceptible to contamination from septic tank effluent, storm runoff, chemical fertilizers and recreational ATV use throughout the dunes. Public interest in the quality and quantity of the aquifer water has been sparked since the City of Florence received a grant from the Environmental Protection Agency for a watershed protection and restoration project. Delineation of the shallow groundwater surface and its relationship to the …

Understanding Sand Mining On The Maha Oya: The Conflict Between Economic And Environmental Survival, Meredith Corea Talbert

Dissertations and Theses

River sand mining from the Maha Oya is the main source of income and a force that drives economic activity for residents along the river. This study takes place in Sri Lanka, there are three villages included in this project: Jambugaswatte, Janituspuraya and Thoppuwa. In Sri Lanka, sand serves as the main building material. It is used to make bricks, tiles, asphalt and concrete, therefore demanding a high market value. However, the over-extraction of sand comes along with significant environmental problems. These communities depend on the river in many ways and the health of the river directly corresponds to the …

Sustainability Education As A Framework For Enhancing Environmental Stewardship In Young Leaders: An Intervention At Tryon Creek Nature Day Camp, Andrea Nicole Lawrence

Dissertations and Theses

UNESCO established Sustainability Education as a top priority when it declared 2005 - 2014 to be the global decade for sustainability. Sustainability education can be implemented in outdoor programs such as nature summer camps in order to build environmental stewardship and ecological literacy in counselors and campers. This study sought to determine the extent to which an ecology and leadership training given to assistant counselors at Tryon Creek State Natural Area day camp achieved the goals of sustainability education--for the assistant counselors to learn about ecology, develop stewardship attitudes and behaviors toward the environment, and become positive role models for …

Short-Term Plasticity At The Schaffer Collateral: A New Model With Implications For Hippocampal Processing, Andrew Hamilton Toland

Dissertations and Theses

A new mathematical model of short-term synaptic plasticity (STP) at the Schaffer collateral is introduced. Like other models of STP, the new model relates short-term synaptic plasticity to an interaction between facilitative and depressive dynamic influences. Unlike previous models, the new model successfully simulates facilitative and depressive dynamics within the framework of the synaptic vesicle cycle. The novelty of the model lies in the description of a competitive interaction between calcium-sensitive proteins for binding sites on the vesicle release machinery. By attributing specific molecular causes to observable presynaptic effects, the new model of STP can predict the effects of specific …

Long-Term Responses Of Phalaris Arundinacea And Columbia River Bottomland Vegetation To Managed Flooding, Tina Schantz Farrelly

Dissertations and Theses

I sought to determine the effect of managed flooding on Phalaris arundinacea L. and other plant species distributions in a large wetland complex, Smith and Bybee Wetlands (SBW), in northwestern Oregon. Altered hydrology has reduced historically high spring flow and prematurely initiated the historic summer drying period at SBW. This alteration has increased the coverage of invasive plants (e.g., P. arundinacea) causing a decrease in native plant cover and thus degrading ecological functions. SBW managers installed a water control structure (WCS) between SBW and the Columbia Slough/River system to impound winter rainfall and thus approximate the ecological benefits that natural …

A Survey And Analysis Of Solutions To The Oblivious Memory Access Problem, Erin Elizabeth Chapman

Dissertations and Theses

Despite the use of strong encryption schemes, one can still learn information about encrypted data using side channel attacks [2]. Watching what physical memory is being accessed can be such a side channel. One can hide this information by using oblivious simulation - hiding the true access pattern of a program. In this paper we will review the model behind oblivious simulation, attempt to formalize the problem and define a security game. We will review the major solutions pro- posed so far, the square root and hierarchical solutions, as well as propose a new variation on the square root solution. …

Variability In The Mass Flux Of The Ross Sea Ice Streams, Antarctica, Over The Last Millennium, Ginny Catania, Christina L. Hulbe, Howard Conway, Ted A. Scambos, C. F. Raymond

Geology Faculty Publications and Presentations

We synthesize previously published remote-sensing observations, radar data and model output to obtain a ~1000 year ice flow history for the Siple Coast ice-stream system in West Antarctica to investigate the timing and magnitude of changes in mass flux. The synthesized history shows significant short-term variability in ice-stream shear margin and grounding line position due to internal variability of the coupled system. The chronology highlights the interplay between adjacent ice streams, which implies that the behavior of any individual ice stream should not be examined in isolation. Furthermore, individual events cannot be fully interpreted without an understanding of the broad-scale, …