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Articles 8851 - 8880 of 12195

Full-Text Articles in Physical Sciences and Mathematics

Probiotic Strain Stenotrophomonas Acidaminiphila Bj1 Degrades And Reduces Chlorothalonil Toxicity To Soil Enzymes, Microbial Communities And Plant Roots, Qingming Zhang, Muhammad Saleem, Caixia Wang Dec 2017

Probiotic Strain Stenotrophomonas Acidaminiphila Bj1 Degrades And Reduces Chlorothalonil Toxicity To Soil Enzymes, Microbial Communities And Plant Roots, Qingming Zhang, Muhammad Saleem, Caixia Wang

Plant and Soil Sciences Faculty Publications

Chlorothalonil, a non-systemic and broad-spectrum fungicide, is widely used to control the pathogens of agricultural plants. Although microbial degradation of chlorothalonil is known, we know little about the colonization and degradation capacity of these microbes in the natural and semi-natural soil environments. Therefore, we studied the colonization and detoxification potential of a chlorothalonil degrading Stenotrophomonas acidaminiphila probiotic strain BJ1 in the soil under green conditions. The results from polymerase chain reaction-denaturing gradient gel electrophoresis demonstrated that probiotic strain BJ1 successfully colonized the soil by competing with the native biota. Moreover, the bacterial inoculation stimulated some members of indigenous soil microbial …


Remote Sensing Of Forests Using Discrete Return Airborne Lidar, Hamid Hamraz, Marco A. Contreras Dec 2017

Remote Sensing Of Forests Using Discrete Return Airborne Lidar, Hamid Hamraz, Marco A. Contreras

Forestry and Natural Resources Faculty Publications

Airborne discrete return light detection and ranging (LiDAR) point clouds covering forested areas can be processed to segment individual trees and retrieve their morphological attributes. Segmenting individual trees in natural deciduous forests, however, remained a challenge because of the complex and multi-layered canopy. In this chapter, we present (i) a robust segmentation method that avoids a priori assumptions about the canopy structure, (ii) a vertical canopy stratification procedure that improves segmentation of understory trees, (iii) an occlusion model for estimating the point density of each canopy stratum, and (iv) a distributed computing approach for efficient processing at the forest level. …


The Role Of Catalytic Residue PKA On The Hydrolysis/Transglycosylation Partition In Family 3 Β-Glucosidases, Inacrist Geronimo, Christina M. Payne, Mats Sandgren Dec 2017

The Role Of Catalytic Residue PKA On The Hydrolysis/Transglycosylation Partition In Family 3 Β-Glucosidases, Inacrist Geronimo, Christina M. Payne, Mats Sandgren

Chemical and Materials Engineering Faculty Publications

β-Glucosidases (βgls) primarily catalyze the hydrolysis of the terminal glycosidic bond at the non-reducing end of β-glucosides, although glycosidic bond synthesis (called transglycosylation) can also occur in the presence of another acceptor. In the final reaction step, the glucose product or another substrate competes with water for transfer to the glycosyl-enzyme intermediate. The factors governing the balance between the two pathways are not fully known; however, the involvement of ionizable residues in binding and catalysis suggests that their pKa may play a role. Through constant pH molecular dynamics simulations of a glycoside hydrolase Family 3 (GH3) βgl, we …


Spin-Valley Coherent Phases Of The V = 0 Quantum Hall State In Bilayer Graphene, Ganpathy Murthy, Efrat Shimshoni, H. A. Fertig Dec 2017

Spin-Valley Coherent Phases Of The V = 0 Quantum Hall State In Bilayer Graphene, Ganpathy Murthy, Efrat Shimshoni, H. A. Fertig

Physics and Astronomy Faculty Publications

Bilayer graphene (BLG) offers a rich platform for broken-symmetry states stabilized by interactions. In this work, we study the phase diagram of BLG in the quantum Hall regime at filling factor ν = 0 within the Hartree-Fock approximation. In the simplest noninteracting situation, this system has eight (nearly) degenerate Landau levels near the Fermi energy, characterized by spin, valley, and orbital quantum numbers. We incorporate in our study two effects not previously considered: (i) the nonperturbative effect of trigonal warping in the single-particle Hamiltonian, and (ii) short-range SU(4) symmetry-breaking interactions that distinguish the energetics of the orbitals. We find within …


Integrating Herbivore Population Dynamics Into A Global Land Biosphere Model: Plugging Animals Into The Earth System, Shree R. S. Dangal, Hanqin Tian, Chaoqun Lu, Wei Ren, Shufen Pan, Jia Yang, Nicola Di Cosmo, Amy Hessl Dec 2017

Integrating Herbivore Population Dynamics Into A Global Land Biosphere Model: Plugging Animals Into The Earth System, Shree R. S. Dangal, Hanqin Tian, Chaoqun Lu, Wei Ren, Shufen Pan, Jia Yang, Nicola Di Cosmo, Amy Hessl

Plant and Soil Sciences Faculty Publications

Mammalian herbivores are an essential component of grassland and savanna ecosystems, and with feedbacks to the climate system. To date, the response and feedbacks of mammalian herbivores to changes in both abiotic and biotic factors are poorly quantified and not adequately represented in the current global land surface modeling framework. In this study, we coupled herbivore population dynamics in a global land model (the Dynamic Land Ecosystem Model, DLEM 3.0) to simulate populations of horses, cattle, sheep, and goats, and their responses to changes in multiple environmental factors at the site level across different continents during 1980–2010. Simulated results show …


Fluoroethoxy-1,4-Diphenethylpiperidine And Piperazine Derivatives: Potent And Selective Inhibitors Of [3H]Dopamine Uptake At The Vesicular Monoamine Transporter-2, Emily R. Hankosky, Shyam R. Joolakanti, Justin R. Nickell, Venumadhav Janganati, Linda P. Dwoskin, Peter A. Crooks Dec 2017

Fluoroethoxy-1,4-Diphenethylpiperidine And Piperazine Derivatives: Potent And Selective Inhibitors Of [3H]Dopamine Uptake At The Vesicular Monoamine Transporter-2, Emily R. Hankosky, Shyam R. Joolakanti, Justin R. Nickell, Venumadhav Janganati, Linda P. Dwoskin, Peter A. Crooks

Pharmaceutical Sciences Faculty Publications

A small library of fluoroethoxy-1,4-diphenethyl piperidine and fluoroethoxy-1,4-diphenethyl piperazine derivatives were designed, synthesized and evaluated for their ability to inhibit [3H]dopamine (DA) uptake at the vesicular monoamine transporter-2 (VMAT2) and dopamine transporter (DAT), [3H]serotonin (5-HT) uptake at the serotonin transporter (SERT), and [3H]dofetilide binding at the human-ether-a-go-go-related gene (hERG) channel. The majority of the compounds exhibited potent inhibition of [3H]DA uptake at VMAT2, with Ki values in the nanomolar range (Ki = 0.014–0.073 μM). Compound 15d exhibited the highest affinity (Ki = 0.014 μM) at VMAT2, and had 160-, 5-, …


Layer-By-Layer Assembled Membranes With Immobilized Porins, Sebastián Hernández, Cassandra Porter, Xinyi Zhang, Yinan Wei, Dibakar Bhattacharyya Dec 2017

Layer-By-Layer Assembled Membranes With Immobilized Porins, Sebastián Hernández, Cassandra Porter, Xinyi Zhang, Yinan Wei, Dibakar Bhattacharyya

Chemical and Materials Engineering Faculty Publications

New and advanced opportunities are arising for the synthesis and functionalization of membranes with selective separation, reactivity, and stimuli-responsive behavior. One such advancement is the integration of bio-based channels in membrane technologies. By a layer-by-layer (LbL) assembly of polyelectrolytes, outer membrane protein F trimers (OmpF) or “porins” from Escherichia coli with central pores ∼2 nm in diameter at their opening and ∼0.7 × 1.1 nm at their constricted region are immobilized within the pores of poly(vinylidene fluoride) microfiltration membranes, in contrast to traditional ruptured lipid bilayer or vesicle processes. These OmpF-membranes demonstrate selective rejection of non-charged organics over ionic solutes, …


Sdss-Iv Manga: Probing The Kinematic Morphology–Density Relation Of Early-Type Galaxies With Manga, J. E. Greene, A. Leauthaud, E. Emsellem, D. Goddard, J. Ge, B. H. Andrews, J. Brinkman, J. R. Brownstein, J. Greco, D. Law, Y. -T. Lin, K. L. Masters, M. Merrifield, S. More, N. Okabe, D. P. Schneider, D. Thomas, D. A. Wake, Renbin Yan, N. Drory Dec 2017

Sdss-Iv Manga: Probing The Kinematic Morphology–Density Relation Of Early-Type Galaxies With Manga, J. E. Greene, A. Leauthaud, E. Emsellem, D. Goddard, J. Ge, B. H. Andrews, J. Brinkman, J. R. Brownstein, J. Greco, D. Law, Y. -T. Lin, K. L. Masters, M. Merrifield, S. More, N. Okabe, D. P. Schneider, D. Thomas, D. A. Wake, Renbin Yan, N. Drory

Physics and Astronomy Faculty Publications

The "kinematic" morphology–density relation for early-type galaxies posits that those galaxies with low angular momentum are preferentially found in the highest-density regions of the universe. We use a large sample of galaxy groups with halo masses 1012.5 < Mhalo < 1014.5 h-1 M observed with the Mapping Nearby Galaxies at APO (MaNGA) survey to examine whether there is a correlation between local environment and rotational support that is independent of stellar mass. We find no compelling evidence for a relationship between the angular momentum content of early-type galaxies and either local overdensity or radial position within the group …


Synergistic Interactions Of H2 And N2 With Molten Gallium In The Presence Of Plasma, Maria L. Carreon, Daniel F. Jaramillo-Cabanzo, Indira Chaudhuri, Madhu Menon, Mahendra K. Sunkara Dec 2017

Synergistic Interactions Of H2 And N2 With Molten Gallium In The Presence Of Plasma, Maria L. Carreon, Daniel F. Jaramillo-Cabanzo, Indira Chaudhuri, Madhu Menon, Mahendra K. Sunkara

Physics and Astronomy Faculty Publications

The present study examines the interaction of hydrogen and nitrogen plasmas with gallium in an effort to gain insights into the mechanisms behind the synergetic effect of plasma and a catalytic metal. Absorption/desorption experiments were performed, accompanied by theoretical-computational calculations. Experiments were carried out in a plasma-enhanced, Ga-packed, batch reactor and entailed monitoring the change in pressure at different temperatures. The results indicated a rapid adsorption/dissolution of the gas into the molten metal when gallium was exposed to plasma, even at a low temperature of 100 °C. The experimental observations, when hydrogen was used, indicate that gallium acts as a …


Sdss-Iv Manga: Spatially Resolved Star Formation Main Sequence And Li(N)Er Sequence, B. C. Hsieh, Lihwai Lin, J. H. Lin, H. A. Pan, C. H. Hsu, S. F. Sánchez, M. Cano-Díaz, Kai Zhang, Renbin Yan, J. K. Barrera-Ballesteros, M. Boquien, R. Riffel, J. Brownstein, I. Cruz-González, A. Hagen, H. Ibarra, K. Pan, D. Bizyaev, D. Oravetz, A. Simmons Dec 2017

Sdss-Iv Manga: Spatially Resolved Star Formation Main Sequence And Li(N)Er Sequence, B. C. Hsieh, Lihwai Lin, J. H. Lin, H. A. Pan, C. H. Hsu, S. F. Sánchez, M. Cano-Díaz, Kai Zhang, Renbin Yan, J. K. Barrera-Ballesteros, M. Boquien, R. Riffel, J. Brownstein, I. Cruz-González, A. Hagen, H. Ibarra, K. Pan, D. Bizyaev, D. Oravetz, A. Simmons

Physics and Astronomy Faculty Publications

We present our study on the spatially resolved Hα and M* relation for 536 star-forming and 424 quiescent galaxies taken from the MaNGA survey. We show that the star formation rate surface density (ΣSFR), derived based on the Hα emissions, is strongly correlated with the M* surface density (Σ*) on kiloparsec scales for star-forming galaxies and can be directly connected to the global star-forming sequence. This suggests that the global main sequence may be a consequence of a more fundamental relation on small scales. On the other hand, our result suggests that …


Long-Term Follow-Up Of Cardiac Function And Quality Of Life For Patients In Nsabp Protocol B-31/Nrg Oncology: A Randomized Trial Comparing The Safety And Efficacy Of Doxorubicin And Cyclophosphamide (Ac) Followed By Paclitaxel With Ac Followed By Paclitaxel And Trastuzumab In Patients With Node-Positive Breast Cancer With Tumors Overexpressing Human Epidermal Growth Factor Receptor 2, Patricia A. Ganz, Edward H. Romond, Reena S. Cecchini, Priya Rastogi, Charles E. Geyer Jr., Sandra M. Swain, Jong-Hyeon Jeong, Louis Fehrenbacher, Howard M. Gross, Adam M. Brufsky, Patrick J. Flynn, Tanya A. Wahl, Thomas E. Seay, James L. Wade Iii, David D. Biggs, James N. Atkins, Jonathan Polikoff, John L. Zapas, Eleftherios P. Mamounas, Norman Wolmark Dec 2017

Long-Term Follow-Up Of Cardiac Function And Quality Of Life For Patients In Nsabp Protocol B-31/Nrg Oncology: A Randomized Trial Comparing The Safety And Efficacy Of Doxorubicin And Cyclophosphamide (Ac) Followed By Paclitaxel With Ac Followed By Paclitaxel And Trastuzumab In Patients With Node-Positive Breast Cancer With Tumors Overexpressing Human Epidermal Growth Factor Receptor 2, Patricia A. Ganz, Edward H. Romond, Reena S. Cecchini, Priya Rastogi, Charles E. Geyer Jr., Sandra M. Swain, Jong-Hyeon Jeong, Louis Fehrenbacher, Howard M. Gross, Adam M. Brufsky, Patrick J. Flynn, Tanya A. Wahl, Thomas E. Seay, James L. Wade Iii, David D. Biggs, James N. Atkins, Jonathan Polikoff, John L. Zapas, Eleftherios P. Mamounas, Norman Wolmark

Markey Cancer Center Faculty Publications

Purpose

Early cardiac toxicity is a risk associated with adjuvant chemotherapy plus trastuzumab. However, objective measures of cardiac function and health-related quality of life are lacking in long-term follow-up of patients who remain cancer free after completion of adjuvant treatment.

Patients and Methods

Patients in NSABP Protocol B-31 received anthracycline and taxane chemotherapy with or without trastuzumab for adjuvant treatment of node-positive, human epidermal growth factor receptor 2–positive early-stage breast cancer. A long-term follow-up assessment was undertaken for patients who were alive and disease free, which included measurement of left ventricular ejection fraction by multigated acquisition scan along with patient-reported …


Some Dimension Reduction Strategies For The Analysis Of Survey Data, Jiaying Weng, Derek S. Young Dec 2017

Some Dimension Reduction Strategies For The Analysis Of Survey Data, Jiaying Weng, Derek S. Young

Statistics Faculty Publications

In the era of big data, researchers interested in developing statistical models are challenged with how to achieve parsimony. Usually, some sort of dimension reduction strategy is employed. Classic strategies are often in the form of traditional inference procedures, such as hypothesis testing; however, the increase in computing capabilities has led to the development of more sophisticated methods. In particular, sufficient dimension reduction has emerged as an area of broad and current interest. While these types of dimension reduction strategies have been employed for numerous data problems, they are scantly discussed in the context of analyzing survey data. This …


The 13th Data Release Of The Sloan Digital Sky Survey: First Spectroscopic Data From The Sdss-Iv Survey Mapping Nearby Galaxies At Apache Point Observatory, Franco D. Albareti, Carlos Allende Prieto, Andres Almeida, Friedrich Anders, Scott Anderson, Brett H. Andrews, Alfonso Aragón-Salamanca, Maria Argudo-Fernández, Eric Armengaud, Eric Aubourg, Vladimir Avila-Reese, Carles Badenes, Stephen Bailey, Beatriz Barbuy, Kat Barger, Jorge Barrera-Ballesteros, Curtis Bartosz, Sarbani Basu, Dominic Bates, Giuseppina Battaglia, Falk Baumgarten, Julien Baur, Julian Bautista, Timothy C. Beers, Francesco Belfiore, Matthew Bershady, Sara Bertran De Lis, Jonathan C. Bird, Dmitry Bizyaev, Guillermo A. Blanc, Renbin Yan, Kai Zhang Dec 2017

The 13th Data Release Of The Sloan Digital Sky Survey: First Spectroscopic Data From The Sdss-Iv Survey Mapping Nearby Galaxies At Apache Point Observatory, Franco D. Albareti, Carlos Allende Prieto, Andres Almeida, Friedrich Anders, Scott Anderson, Brett H. Andrews, Alfonso Aragón-Salamanca, Maria Argudo-Fernández, Eric Armengaud, Eric Aubourg, Vladimir Avila-Reese, Carles Badenes, Stephen Bailey, Beatriz Barbuy, Kat Barger, Jorge Barrera-Ballesteros, Curtis Bartosz, Sarbani Basu, Dominic Bates, Giuseppina Battaglia, Falk Baumgarten, Julien Baur, Julian Bautista, Timothy C. Beers, Francesco Belfiore, Matthew Bershady, Sara Bertran De Lis, Jonathan C. Bird, Dmitry Bizyaev, Guillermo A. Blanc, Renbin Yan, Kai Zhang

Physics and Astronomy Faculty Publications

The fourth generation of the Sloan Digital Sky Survey (SDSS-IV) began observations in 2014 July. It pursues three core programs: the Apache Point Observatory Galactic Evolution Experiment 2 (APOGEE-2), Mapping Nearby Galaxies at APO (MaNGA), and the Extended Baryon Oscillation Spectroscopic Survey (eBOSS). As well as its core program, eBOSS contains two major subprograms: the Time Domain Spectroscopic Survey (TDSS) and the SPectroscopic IDentification of ERosita Sources (SPIDERS). This paper describes the first data release from SDSS-IV, Data Release 13 (DR13). DR13 makes publicly available the first 1390 spatially resolved integral field unit observations of nearby galaxies from MaNGA. It …


Bayesian Prediction Intervals For Assessing P-Value Variability In Prospective Replication Studies, Olga A. Vsevolozhskaya, Gabriel Ruiz, Dmitri Zaykin Dec 2017

Bayesian Prediction Intervals For Assessing P-Value Variability In Prospective Replication Studies, Olga A. Vsevolozhskaya, Gabriel Ruiz, Dmitri Zaykin

Biostatistics Faculty Publications

Increased availability of data and accessibility of computational tools in recent years have created an unprecedented upsurge of scientific studies driven by statistical analysis. Limitations inherent to statistics impose constraints on the reliability of conclusions drawn from data, so misuse of statistical methods is a growing concern. Hypothesis and significance testing, and the accompanying P-values are being scrutinized as representing the most widely applied and abused practices. One line of critique is that P-values are inherently unfit to fulfill their ostensible role as measures of credibility for scientific hypotheses. It has also been suggested that while P-values …


Sea Quarks Contribution To The Nucleon Magnetic Moment And Charge Radius At The Physical Point, Raza Sabbir Sufian, Yi-Bo Yang, Jian Liang, Terrence Draper, Keh-Fei Liu Dec 2017

Sea Quarks Contribution To The Nucleon Magnetic Moment And Charge Radius At The Physical Point, Raza Sabbir Sufian, Yi-Bo Yang, Jian Liang, Terrence Draper, Keh-Fei Liu

Physics and Astronomy Faculty Publications

We report a comprehensive analysis of the light and strange disconnected-sea quarks contribution to the nucleon magnetic moment, charge radius, and the electric and magnetic form factors. The lattice QCD calculation includes ensembles across several lattice volumes and lattice spacings with one of the ensembles at the physical pion mass. We adopt a model-independent extrapolation of the nucleon magnetic moment and the charge radius. We have performed a simultaneous chiral, infinite volume, and continuum extrapolation in a global fit to calculate results in the continuum limit. We find that the combined light and strange disconnected-sea quarks contribution to the nucleon …


Synthesis And Characterization Of Thermoresponsive Hydrogels Based On N-Isopropylacrylamide Crosslinked With 4,4′-Dihydroxybiphenyl Diacrylate, Shuo Tang, Martha Floy, Rohit Bhandari, Manjula Sunkara, Andrew J. Morris, Thomas D. Dziubla, J. Zach Hilt Dec 2017

Synthesis And Characterization Of Thermoresponsive Hydrogels Based On N-Isopropylacrylamide Crosslinked With 4,4′-Dihydroxybiphenyl Diacrylate, Shuo Tang, Martha Floy, Rohit Bhandari, Manjula Sunkara, Andrew J. Morris, Thomas D. Dziubla, J. Zach Hilt

Chemical and Materials Engineering Faculty Publications

A novel crosslinker [4,4′-dihydroxybiphenyl diacrylate (44BDA)] was developed, and a series of temperature-responsive hydrogels were synthesized through free radical polymerization of N-isopropylacrylamide (NIPAAm) with 44BDA. The temperature-responsive behavior of the resulting gels was characterized by swelling studies, and the lower critical solution temperature (LCST) of the hydrogels was characterized through differential scanning calorimetry. Increased content of 44BDA led to a decreased swelling ratio and shifted the LCST to lower temperatures. These novel hydrogels also displayed resiliency through multiple swelling–deswelling cycles, and their temperature responsiveness was reversible. The successful synthesis of NIPAAm-based hydrogels crosslinked with 44BDA has led to a …


Process For Detection Of Alzheimer's Disease From A Serum Sample, Mark A. Lovell, Bert C. Lynn Dec 2017

Process For Detection Of Alzheimer's Disease From A Serum Sample, Mark A. Lovell, Bert C. Lynn

Chemistry Faculty Patents

Disclosed is a method of detecting a concentration of a biomarker in a human subject having or being at risk of developing Alzheimer's disease or Mild Cognitive Impairment (MCI). Also disclosed is a process for detecting a concentration of a biomarker in a human subject having or being at risk of developing Alzheimer's disease or Mild Cognitive Impairment (MCI) comprising (a) detecting a first concentration of lipocalin-PDS/TTR complex in a blood sample or urine sample from the subject, (b) determining a second concentration of PDS/TTR complex in a blood sample or urine sample from an unaffected individual, and ( c) …


Vibronically Coherent Ultrafast Triplet-Pair Formation And Subsequent Thermally Activated Dissociation Control Efficient Endothermic Singlet Fission, Hannah L. Stern, Alexandre Cheminal, Shane R. Yost, Katharina Broch, Sam L. Bayliss, Kai Chen, Maxim Tabachnyk, Karl J. Thorley, Neil Greenham, Justin Hodgkiss, John E. Anthony, Martin Head-Gordon, Andrew J. Musser, Akshay Rao, Richard H. Friend Dec 2017

Vibronically Coherent Ultrafast Triplet-Pair Formation And Subsequent Thermally Activated Dissociation Control Efficient Endothermic Singlet Fission, Hannah L. Stern, Alexandre Cheminal, Shane R. Yost, Katharina Broch, Sam L. Bayliss, Kai Chen, Maxim Tabachnyk, Karl J. Thorley, Neil Greenham, Justin Hodgkiss, John E. Anthony, Martin Head-Gordon, Andrew J. Musser, Akshay Rao, Richard H. Friend

Chemistry Faculty Publications

Singlet exciton fission (SF), the conversion of one spin-singlet exciton (S1) into two spin-triplet excitons (T1), could provide a means to overcome the Shockley–Queisser limit in photovoltaics. SF as measured by the decay of S1 has been shown to occur efficiently and independently of temperature, even when the energy of S1 is as much as 200 meV less than that of 2T1. Here we study films of triisopropylsilyltetracene using transient optical spectroscopy and show that the triplet pair state (TT), which has been proposed to mediate singlet fission, forms on ultrafast timescales …


Three-Dimensional Vapor Intrusion Modeling Approach That Combines Wind And Stack Effects On Indoor, Atmospheric, And Subsurface Domains, Elham Shirazi, Kelly G. Pennell Dec 2017

Three-Dimensional Vapor Intrusion Modeling Approach That Combines Wind And Stack Effects On Indoor, Atmospheric, And Subsurface Domains, Elham Shirazi, Kelly G. Pennell

Civil Engineering Faculty Publications

Vapor intrusion (IV) exposure risks are difficult to characterize due to the role of atmospheric, building and subsurface processes. This study presents a three-dimensional VI model that extends the common subsurface fate and transport equations to incorporate wind and stack effects on indoor air pressure, building air exchange rate (AER) and indoor contaminant concentration to improve VI exposure risk estimates. The model incorporates three modeling programs: (1) COMSOL Multiphysics to model subsurface fate and transport processes, (2) CFD0 to model atmospheric air flow around the building, and (3) CONTAM to model indoor air quality. The combined VI model predicts AER …


A Customized Quantitative Pcr Microrna Panel Provides A Technically Robust Context For Studying Neurodegenerative Disease Biomarkers And Indicates A High Correlation Between Cerebrospinal Fluid And Choroid Plexus Microrna Expression, Wang-Xia Wang, David W. Fardo, Gregory A. Jicha, Peter T. Nelson Dec 2017

A Customized Quantitative Pcr Microrna Panel Provides A Technically Robust Context For Studying Neurodegenerative Disease Biomarkers And Indicates A High Correlation Between Cerebrospinal Fluid And Choroid Plexus Microrna Expression, Wang-Xia Wang, David W. Fardo, Gregory A. Jicha, Peter T. Nelson

Sanders-Brown Center on Aging Faculty Publications

MicroRNA (miRNA) expression varies in association with different tissue types and in diseases. Having been found in body fluids including blood and cerebrospinal fluid (CSF), miRNAs constitute potential biomarkers. CSF miRNAs have been proposed as biomarkers for neurodegenerative diseases; however, there is a lack of consensus about the best candidate miRNA biomarkers and there has been variability in results from different research centers, perhaps due to technical factors. Here, we sought to optimize technical parameters for CSF miRNA studies. We examined different RNA isolation methods and performed miRNA expression profiling with TaqMan® miRNA Arrays. More specifically, we developed a customized …


Reliability Of An Observational Method Used To Assess Tennis Serve Mechanics In A Group Of Novice Raters, Natalie L. Myers, W. Ben Kibler, Gilson J. Capilouto, Philip M. Westgate, Tony English, Timothy L. Uhl Dec 2017

Reliability Of An Observational Method Used To Assess Tennis Serve Mechanics In A Group Of Novice Raters, Natalie L. Myers, W. Ben Kibler, Gilson J. Capilouto, Philip M. Westgate, Tony English, Timothy L. Uhl

Physical Therapy Faculty Publications

Background: Previous research has developed an observational tennis serve analysis (OTSA) tool to assess serve mechanics. The OTSA has displayed substantial agreement between the two health care professionals that developed the tool; however, it is currently unknown if the OTSA is reliable when administered by novice users.

Purpose: The purpose of this investigation was to determine if reliability for the OTSA could be established in novice users via an interactive classroom training session.

Methods: Eight observers underwent a classroom instructional training protocol highlighting the OTSA. Following training, observers participated in two different rating sessions approximately a week apart. Each observer …


Challenges In Characterizing The Environmental Fate And Effects Of Carbon Nanotubes And Inorganic Nanomaterials In Aquatic Systems, Peter Laux, Christian Riebeling, Andy M. Booth, Joseph D. Brain, Josephine Brunner, Cristina Cerrillo, Otto Creutzenberg, Irina Estrela-Lopis, Thomas Gebel, Gunnar Johanson, Harald Jungnickel, Heiko Kock, Jutta Tentschert, Ahmed Tlili, Andreas Schäffer, Adriënne J. A. M. Sips, Robert A. Yokel, Andreas Luch Nov 2017

Challenges In Characterizing The Environmental Fate And Effects Of Carbon Nanotubes And Inorganic Nanomaterials In Aquatic Systems, Peter Laux, Christian Riebeling, Andy M. Booth, Joseph D. Brain, Josephine Brunner, Cristina Cerrillo, Otto Creutzenberg, Irina Estrela-Lopis, Thomas Gebel, Gunnar Johanson, Harald Jungnickel, Heiko Kock, Jutta Tentschert, Ahmed Tlili, Andreas Schäffer, Adriënne J. A. M. Sips, Robert A. Yokel, Andreas Luch

Pharmaceutical Sciences Faculty Publications

The current lack of commonly used protocols for dispersion, characterization, and aquatic toxicity testing of nanomaterials (NMs) has resulted in inconsistent results, which make meaningful comparisons difficult. The need for standardized sample preparation procedures that allow the reproducible generation of relevant test conditions remains a key challenge for studies of the environmental fate and aquatic toxicity of NMs. Together with the further development of optimized and cost-effective analytical techniques for physicochemical characterization that depend on reproducible sample preparation, such methods have the potential to overcome the current uncertainties with regard to NM dispersion properties, effective dose, and particle dissolution. In …


Sampling Effort And Uncertainty In Leaf Litterfall Mass And Nutrient Flux In Northern Hardwood Forests, Yang Yang, Ruth D. Yanai, Craig R. See, Mary A. Arthur Nov 2017

Sampling Effort And Uncertainty In Leaf Litterfall Mass And Nutrient Flux In Northern Hardwood Forests, Yang Yang, Ruth D. Yanai, Craig R. See, Mary A. Arthur

Forestry and Natural Resources Faculty Publications

Designs for litterfall sampling can be improved by understanding the sources of uncertainty in litterfall mass and nutrient concentration. We compared the coefficient of variation of leaf litterfall mass and nutrient concentrations (nitrogen, phosphorus, calcium, magnesium, and potassium) at different spatial scales and across years for six northern hardwood species from 23 stands in the White Mountains of New Hampshire, USA. Stands with steeper slopes (P = 0.01), higher elevations (P = 0.05), and more westerly aspect (P = 0.002) had higher interannual variation in litter mass, probably due to a litter trap design that allowed litter …


Biases In Metallicity Measurements From Global Galaxy Spectra: The Effects Of Flux Weighting And Diffuse Ionized Gas Contamination, Ryan L. L. Sanders, Alice E. Shapley, Kai Zhang, Renbin Yan Nov 2017

Biases In Metallicity Measurements From Global Galaxy Spectra: The Effects Of Flux Weighting And Diffuse Ionized Gas Contamination, Ryan L. L. Sanders, Alice E. Shapley, Kai Zhang, Renbin Yan

Physics and Astronomy Faculty Publications

Galaxy metallicity scaling relations provide a powerful tool for understanding galaxy evolution, but obtaining unbiased global galaxy gas-phase oxygen abundances requires proper treatment of the various line-emitting sources within spectroscopic apertures. We present a model framework that treats galaxies as ensembles of H II and diffuse ionized gas (DIG) regions of varying metallicities. These models are based upon empirical relations between line ratios and electron temperature for H II regions, and DIG strong-line ratio relations from SDSS-IV MaNGA IFU data. Flux-weighting effects and DIG contamination can significantly affect properties inferred from global galaxy spectra, biasing metallicity estimates by more than …


Compton Scattering From 4He At 61 Mev, M. H. Sikora, M. W. Ahmed, A. Banu, C. Bartram, B. Crowe, E. J. Downie, G. Feldman, H. Gao, H. W. Grießhammer, H. Hao, C. R. Howell, H. J. Karwowski, D. P. Kendellen, Michael A. Kovash, X. Li, D. M. Markoff, S. Mikhailov, V. Popov, R. E. Pywell, J. A. Silano, M. C. Spraker, P. Wallace, H. R. Weller, C. S. Whisnant, Y. K. Wu, W. Xiong, X. Yan, Z. W. Zhao Nov 2017

Compton Scattering From 4He At 61 Mev, M. H. Sikora, M. W. Ahmed, A. Banu, C. Bartram, B. Crowe, E. J. Downie, G. Feldman, H. Gao, H. W. Grießhammer, H. Hao, C. R. Howell, H. J. Karwowski, D. P. Kendellen, Michael A. Kovash, X. Li, D. M. Markoff, S. Mikhailov, V. Popov, R. E. Pywell, J. A. Silano, M. C. Spraker, P. Wallace, H. R. Weller, C. S. Whisnant, Y. K. Wu, W. Xiong, X. Yan, Z. W. Zhao

Physics and Astronomy Faculty Publications

The Compton scattering cross section from 4He has been measured with high statistical accuracy over a scattering angle range of 40−159 using a quasimonoenergetic 61-MeV photon beam at the High Intensity Gamma-Ray Source. The data are interpreted using a phenomenological model sensitive to the dipole isoscalar electromagnetic polarizabilities (αs and βs) of the nucleon. These data can be fit with the model using values of αs and βs that are consistent with the currently accepted values. These data will serve as benchmarks of future calculations from effective field theories and …


An Exactly Solvable Quench Protocol For Integrable Spin Models, Diptarka Das, Sumit R. Das, Damián A. Galante, Robert C. Myers, Krishnendu Sengupta Nov 2017

An Exactly Solvable Quench Protocol For Integrable Spin Models, Diptarka Das, Sumit R. Das, Damián A. Galante, Robert C. Myers, Krishnendu Sengupta

Physics and Astronomy Faculty Publications

Quantum quenches in continuum field theory across critical points are known to display different scaling behaviours in different regimes of the quench rate. We extend these results to integrable lattice models such as the transverse field Ising model on a one-dimensional chain and the Kitaev model on a two-dimensional honeycomb lattice using a nonlinear quench protocol which allows for exact analytical solutions of the dynamics. Our quench protocol starts with a finite mass gap at early times and crosses a critical point or a critical region, and we study the behaviour of one point functions of the quenched operator at …


Load Model Verification, Validation And Calibration Framework By Statistical Analysis On Field Data, Xiangqing Jiao, Yuan Liao, Thai Nguyen Nov 2017

Load Model Verification, Validation And Calibration Framework By Statistical Analysis On Field Data, Xiangqing Jiao, Yuan Liao, Thai Nguyen

Electrical and Computer Engineering Faculty Publications

Accurate load models are critical for power system analysis and operation. A large amount of research work has been done on load modeling. Most of the existing research focuses on developing load models, while little has been done on developing formal load model verification and validation (V&V) methodologies or procedures. Most of the existing load model validation is based on qualitative rather than quantitative analysis. In addition, not all aspects of model V&V problem have been addressed by the existing approaches. To complement the existing methods, this paper proposes a novel load model verification and validation framework that can systematically …


Evolution Of Galactic Outflows At Z ~ 0–2 Revealed With Sdss, Deep2, And Keck Spectra, Yuma Sugahara, Masami Ouchi, Lihwai Lin, Crystal L. Martin, Yoshiaki Ono, Yuichi Harikane, Takatoshi Shibuya, Renbin Yan Nov 2017

Evolution Of Galactic Outflows At Z ~ 0–2 Revealed With Sdss, Deep2, And Keck Spectra, Yuma Sugahara, Masami Ouchi, Lihwai Lin, Crystal L. Martin, Yoshiaki Ono, Yuichi Harikane, Takatoshi Shibuya, Renbin Yan

Physics and Astronomy Faculty Publications

We conduct a systematic study of galactic outflows in star-forming galaxies at z ~ 0–2 based on the absorption lines of optical spectra taken from SDSS DR7, DEEP2 DR4, and Keck (Erb et al.). We carefully make stacked spectra of homogeneous galaxy samples with similar stellar mass distributions at z ~ 0–2 and perform the multicomponent fitting of model absorption lines and stellar continua to the stacked spectra. We obtain the maximum (vmax) and central (vout) outflow velocities and estimate the mass loading factors (η), a ratio of the mass outflow rate …


First Exclusive Measurement Of Deeply Virtual Compton Scattering Off 4He: Toward The 3d Tomography Of Nuclei, M. Hattawy, N. A. Baltzell, R. Dupré, K. Hafidi, S. Stepanyan, S. Bültmann, R. De Vita, A. El Alaoui, L. El Fassi, H. Egiyan, F. X. Girod, M. Guidal, D. Jenkins, S. Liuti, Y. Perrin, B. Torayev, E. Voutier, K. P. Adhikari, S. Adhikari, D. Adikaram, Z. Akbar, M. J. Amaryan, S. Anefalos Pereira, Whitney R. Armstrong, H. Avakian, J. Ball, M. Bashkanov, M. Battaglieri, V. Batourine, I. Bedlinskiy, Wesley P. Gohn Nov 2017

First Exclusive Measurement Of Deeply Virtual Compton Scattering Off 4He: Toward The 3d Tomography Of Nuclei, M. Hattawy, N. A. Baltzell, R. Dupré, K. Hafidi, S. Stepanyan, S. Bültmann, R. De Vita, A. El Alaoui, L. El Fassi, H. Egiyan, F. X. Girod, M. Guidal, D. Jenkins, S. Liuti, Y. Perrin, B. Torayev, E. Voutier, K. P. Adhikari, S. Adhikari, D. Adikaram, Z. Akbar, M. J. Amaryan, S. Anefalos Pereira, Whitney R. Armstrong, H. Avakian, J. Ball, M. Bashkanov, M. Battaglieri, V. Batourine, I. Bedlinskiy, Wesley P. Gohn

Physics and Astronomy Faculty Publications

We report on the first measurement of the beam-spin asymmetry in the exclusive process of coherent deeply virtual Compton scattering off a nucleus. The experiment uses the 6 GeV electron beam from the Continuous Electron Beam Accelerator Facility (CEBAF) accelerator at Jefferson Lab incident on a pressurized 4He gaseous target placed in front of the CEBAF Large Acceptance Spectrometer (CLAS). The scattered electron is detected by CLAS and the photon by a dedicated electromagnetic calorimeter at forward angles. To ensure the exclusivity of the process, a specially designed radial time projection chamber is used to detect the recoiling 4 …


Reducing Symptom Distress In Patients With Advanced Cancer Using An E-Alert System For Caregivers: Pooled Analysis Of Two Randomized Clinical Trials, David H. Gustafson, Lori L. Dubenske, Amy K. Atwood, Ming-Yuan Chih, Roberta A. Johnson, Fiona Mctavish, Andrew Quanbeck, Roger L. Brown, James F. Cleary, Dhavan Shah Nov 2017

Reducing Symptom Distress In Patients With Advanced Cancer Using An E-Alert System For Caregivers: Pooled Analysis Of Two Randomized Clinical Trials, David H. Gustafson, Lori L. Dubenske, Amy K. Atwood, Ming-Yuan Chih, Roberta A. Johnson, Fiona Mctavish, Andrew Quanbeck, Roger L. Brown, James F. Cleary, Dhavan Shah

Health and Clinical Sciences Faculty Publications

Background: Symptom distress in patients toward the end of life can change rapidly. Family caregivers have the potential to help patients manage those symptoms, as well as their own stress, if they are equipped with the proper resources. Electronic health (eHealth) systems may be able to provide those resources. Very sick patients may not be able to use such systems themselves to report their symptoms but family caregivers could.

Objective: The aim of this paper was to assess the effects on cancer patient symptom distress of an eHealth system that alerts clinicians to significant changes in the patient’s symptoms, as …