Physical Sciences and Mathematics Commons^™

Developing A Robust Geologic Conceptual Model Using Pseudo 3-D P-Wave Seismic Reflection Data, Adrian Addison, Michael G. Waddell, Camelia C. Knapp, Duke T. Brantley, John M. Shafer

Faculty Publications

As part of a multiscale hydrogeophysical and modeling study, a pseudo three-dimensional (3-D) seismic surveywas conducted over a contaminant plume at P area, Savannah River site (South Carolina), to enhance the existing geologicmodel by resolving uncertainties in the lithostratigraphic sequence. The geometry of the dissolved phase trichloroethylene plume, based on initial site characterization, appears to be confined to a narrow corridor within the Eocene sand overlying a clay unit approximately 25m(82 ft) below land surface. Processing the seismic data as a 3-D data volume instead of a series of closely spaced two-dimensional lines allowed for better interpretation of the target …

Diaquabis(5-Fluoro-2-Hydroxybenzoato-Κo1)Zinc(Ii), Diana Rishmawi, Jennifer Kelley, Mark D. Smith, Leroy Peterson, Hans-Conrad Zur Loye

Faculty Publications

The title compound, [Zn(C₇H₄FO₃)₂(H₂O)₂], is a monomeric Zn^II complex. The Zn^II atom, which lies on a twofold rotation axis, is situated in a distorted tetrahedral environment composed of two monodentate carboxlyate O atoms and two water O atoms. O-HO hydrogen bonds link these units, forming sheets that are stacked along the c axis.

Search For Events With An Isolated Lepton And Missing Transverse Momentum And A Measurement Of W Production At Hera, S. Chekanov, M. Derrick, S. Magill, B. Musgrave, D. Nicholass, J. Repond, R. Yoshida, Margarita C. K. Mattingly, P. Antonioli, G. Bari, L. Bellagamba, D. Boscherini, A. Bruni, G. Bruni, F. Cindolo, M. Corradi, G. Iacobucci, A. Margotti, R. Nania, A. Polini, S. Antonelli, M. Basile, M. Bindi, L. Cifarelli, A. Contin, S. De Pasquale, G. Sartorelli, A. Zichichi, D. Bartsch, I. Brock, H. Hartmann

Faculty Publications

A search for events with an isolated high-energy lepton and large missing transverse momentum has been performed with the ZEUS detector at HERA using a total integrated luminosity of 504 pb-1. The results agree well with Standard Model predictions. The cross section for production of single W bosons in electron-proton collisions with unpolarised electrons is measured to be 0.89-0.22+0.25 (stat.) ± 0.10 (syst.) pb. © 2009 Elsevier B.V.

Survival Analysis With High-Dimensional Covariates: An Application In Microarray Studies, David Engler, Yi Li

Faculty Publications

Use of microarray technology often leads to high-dimensional and low-sample size (HDLSS) data settings. A variety of approaches have been proposed for variable selection in this context. However, only a small number of these have been adapted for time-to-event data where censoring is present. Among standard variable selection methods shown both to have good predictive accuracy and to be computationally efficient is the elastic net penalization approach. In this paper, adaptations of the elastic net approach are presented for variable selection both under the Cox proportional hazards model and under an accelerated failure time (AFT) model. Assessment of the two …

Quasi-Anosov Diffeomorphisms Of 3-Manifolds, Todd L. Fisher, Hertz M. Rodriguez

Faculty Publications

In 1969, Hirsch posed the following problem: given a diffeomorphism f:N → N and a compact invariant hyperbolic set Λ of f, describe the topology of Λ and the dynamics of f restricted to Λ. We solve the problem where Λ=M^3 is a closed 3-manifold: if M^3 is orientable, then it is a connected sum of tori and handles; otherwise it is a connected sum of tori and handles quotiented by involutions.

Spamed: A Spam Email Detection Approach Based On Phrase Similarity, Yiu-Kai D. Ng, Maria Soledad Pera

Faculty Publications

Emails are unquestionably one of the most popular communication media these days. Not only they are fast and reliable, but also free in general. Unfortunately, a significant number of emails received by email users on a daily basis are spam. This fact is annoying, since spam emails translate into a waste of user’s time in reviewing and deleting them. In addition, spam emails consume resources, such as storage, bandwidth, and computer processing time. Many attempts have been made in the past to eradicate spam emails; however, none has been proved highly effective. In this paper, we propose a spam-email detection …

Aggregation Of Montmorillonite And Organic Matter In Aqueous Media Containing Artificial Seawater, Yoko Furukawa, Janet L. Watkins, Jinwook Kim, Kenneth J. Curry, Richard H. Bennett

Faculty Publications

Background

The dispersion-aggregation behaviors of suspended colloids in rivers and estuaries are affected by the compositions of suspended materials (i.e., clay minerals vs. organic macromolecules) and salinity. Laboratory experiments were conducted to investigate the dispersion and aggregation mechanisms of suspended particles under simulated river and estuarine conditions. The average hydrodynamic diameters of suspended particles (representing degree of aggregation) and zeta potential (representing the electrokinetic properties of suspended colloids and aggregates) were determined for systems containing suspended montmorillonite, humic acid, and/or chitin at the circumneutral pH over a range of salinity (0 – 7.2 psu).

Results

The montmorillonite-only system increased the …

Disentangling Forms Of Lorentz Violation With Complementary Clock Comparison Experiments, Brett David Altschul

Faculty Publications

Atomic clock comparisons provide some of the most precise tests of Lorentz and CPT symmetries in the laboratory. With data from multiple such experiments using different nuclei, it is possible to constrain new regions of the parameter space for Lorentz violation. Relativistic effects in the nuclei allow us to disentangle forms of Lorentz violation which could not be separately measured in purely nonrelativistic experiments. The disentangled bounds in the neutron sectors are at the 10⁻²⁸ GeV level, far better than could be obtained with any other current technique.

Einstein@Home Search For Periodic Gravitational Waves In Ligo S4 Data, B. Abbott, R. Abbott, R. Adhikari, P. Ajith, B. Allen, G. Allen, R. Amin, D. P. Anderson, S. B. Anderson, W. G. Anderson, M. A. Arain, M. Araya, H. Armandula, P. Armor, Y. Aso, S. Aston, P. Aufmuth, C. Aulbert, S. Babak, S. Ballmer, H. Bantilan, B. C. Barish, C. Barker, D. Barker, B. Barr, P. Barriga, M. A. Barton, M. Bastarrika, K. Bayer, J. Betzwieser, P. T. Beyersdorf, Tiffany Z. Summerscales

Faculty Publications

A search for periodic gravitational waves, from sources such as isolated rapidly spinning neutron stars, was carried out using 510 h of data from the fourth LIGO science run (S4). The search was for quasimonochromatic waves in the frequency range from 50 to 1500 Hz, with a linear frequency drift ḟ (measured at the solar system barycenter) in the range -f/τ<ḟ

Comments On Buzan Et Al. “Positive Relationships Between Freshwater Inflow And Oyster Abundance In Galveston Bay, Texas”, R. Eugene Turner

Faculty Publications

Buzan et al. critique Turner’s (Estuaries and Coasts 29:345–352, 2006) analysis of the relationship between freshwater inflow and oyster productivity in the Gulf of Mexico, using 16 years of fisheries-independent data for Galveston Bay. They conclude that the catch-per-unit effort (CPUE; number h−1) of marketable oysters increase 1 to 2 years after years with increased freshwater inflows, and they express concerns that water supply managers may mis-apply the results of Turner (Estuaries and Coasts 29:345–352, 2006) to justify a reduced freshwater inflow to Galveston Bay. I find no relationship between the CPUE of oyster spat or marketable oyster density and …

The Pecos River Hypogene Speleogenetic Province: A Basin-Scale Karst Paradigm For Eastern New Mexico And West Texas, Usa, Kevin W. Stafford, Alexander Klimchouk, Lewis Land, Marcus O. Gary

Faculty Publications

Since the mid-Tertiary, lateral migration and entrenchment of the Pecos River Valley in eastern New Mexico and west Texas, USA, has significantly influenced regional groundwater flow paths, providing a focus for ascending flow in multi-storey artesian systems and a powerful potentiometric driving force for hypogene speleogenesis. Individual occurrences of hypogene karst phenomena associated with the central Pecos River Valley are widespread throughout the greater Delaware Basin region, including development in a wide range of Permian carbonate and evaporate fades. Hypogene occurrences are well-documented as far north as Santa Rosa, New Mexico and as far south as Lake Amistad, Texas. Throughout …

Habitat Selection By Anolis Carolinensis (Green Anole) In Open Pine Forests In Eastern Texas, Richard R. Schaefer, Robert R. Fleet, D. Craig Rudolph, Nancy E. Koerth

Faculty Publications

We initiated a mark-recapture study to determine the effects of shrub density on Anolis carolinensis (Green Anole) populations. Green Anole perch site, shrub species, and shrub volume preferences were also examined. We established two study plots of different shrub densities in open pine forests on the Angelina National Forest in eastern Texas. In late spring, the Green Anole population at the higher shrub-density plot was estimated to be 16 times greater than the population at the lower shrub-density plot. Green Anoles most commonly perched on live shrubs, but exhibited very little preference or avoidance of any particular species of live …

Singlet Oxygen Delivery Through The Porous Cap Of A Hollow-Core Fiber Optic Device, Matibur Zamadar, David Aebisher, Alexander Greer

Faculty Publications

The development of the first photosensitizer/fiber optic device is reported. An oxygen-flowing, fiber-capped configuration is used for the application of heterogeneous, spatially confined singlet oxygen delivery in aqueous media. This is a unique device, unlike other heterogeneous photosensitizers, in which local concentrations of singlet oxygen can be delivered via introduction and withdrawal of the fiber tip.

Dearth Of Dark Matter Or Massive Dark Halo? Mass-Shape-Anisotropy Degeneracies Revealed By Nmagic Dynamical Models Of The Elliptical Galaxy Ngc 3379, F. De Lorenzi, O. Gerhard, L. Coccato, M. Arnaboldi, M. Capaccioli, K. C. Freeman, K. Kuijken, M. R. Merrifield, N. R. Napolitano, E. Noordermeer, Aaron J. Romanowsky, V. P. Debattista

Faculty Publications

Recent results from the Planetary Nebula Spectrograph (PNS) survey have revealed a rapidly falling velocity dispersion profile in the nearby elliptical galaxy NGC 3379, casting doubts on whether this intermediate-luminosity galaxy has the kind of dark matter (DM) halo expected in Λ cold dark matter (ΛCDM) cosmology. We present a detailed dynamical study of this galaxy, combining ground based long-slit spectroscopy, integral-field data from the Spectrographic Areal Unit for Research on Optical Nebulae (SAURON) instrument and PNS data reaching to more than seven effective radii. We construct dynamical models with the flexible χ2-made-to-measure (χ2M2M) particle method implemented in the NMAGIC …

The Planetary Nebula Spectrograph Elliptical Galaxy Survey: The Dark Matter In Ngc 4494, N. R. Napolitano, Aaron J. Romanowsky, L. Coccato, M. Capaccioli, N. G. Douglas, E. Noordermeer, O. Gerhard, M. Arnaboldi, F. De Lorenzi, K. Kuijken, M. R. Merrifield, E. O'Sullivan, A. Cortesi, P. Das, K. C. Freeman

Faculty Publications

We present new Planetary Nebula Spectrograph observations of the ordinary elliptical galaxy NGC 4494, resulting in positions and velocities of 255 planetary nebulae out to seven effective radii (25 kpc). We also present new wide-field surface photometry from MMT/Megacam, and long-slit stellar kinematics from VLT/FORS2. The spatial and kinematical distributions of the planetary nebulae agree with the field stars in the region of overlap. The mean rotation is relatively low, with a possible kinematic axis twist outside 1Re. The velocity dispersion profile declines with radius, though not very steeply, down to ∼70 km s−1 at the last data point. We …

Probing The 2d Kinematic Structure Of Early-Type Galaxies Out To 3 Effective Radii, R. N. Proctor, D. A. Forbes, J. P. Brodie, Aaron J. Romanowsky, J. Strader, M. Spolaor, J. T. Mendel, L. Spitler

Faculty Publications

We detail an innovative new technique for measuring the two-dimensional (2D) velocity moments (rotation velocity, velocity dispersion and Gauss–Hermite coefficients h3 and h4) of the stellar populations of galaxy haloes using spectra from Keck DEIMOS (Deep Imaging Multi-Object Spectrograph) multi-object spectroscopic observations. The data are used to reconstruct 2D rotation velocity maps. Here we present data for five nearby early-type galaxies to ∼three effective radii. We provide significant insights into the global kinematic structure of these galaxies, and challenge the accepted morphological classification in several cases. We show that between one and three effective radii the velocity dispersion declines very …

Central Mass-To-Light Ratios And Dark Matter Fractions In Early-Type Galaxies, C. Tortora, N. R. Napolitano, Aaron J. Romanowsky, M. Capaccioli, G. Covone

Faculty Publications

Dynamical studies of local elliptical galaxies and the Fundamental Plane point to a strong dependence of the total mass-to-light ratio (M/L) on luminosity with a relation of the form M/L∝Lγ. The ‘tilt’γ may be caused by various factors, including stellar population properties (metallicity, age and star formation history), initial mass function, rotational support, luminosity profile non-homology and dark matter (DM) fraction. We evaluate the impact of all these factors using a large uniform data set of local early-type galaxies from Prugniel & Simien. We take particular care in estimating the stellar masses, using a general star formation history, and comparing …

Kinematic Properties Of Early-Type Galaxy Haloes Using Planetary Nebulae, L. Coccato, O. Gerhard, M. Arnaboldi, P. Das, N. G. Douglas, K. Kuijken, M. R. Merrifield, N. R. Napolitano, Aaron J. Romanowsky, E. Noordermeer, M. Capaccioli, A. Cortesi, F. De Lorenzi, K. C. Freeman

Faculty Publications

We present new planetary nebulae (PNe) positions, radial velocities and magnitudes for six early-type galaxies obtained with the Planetary Nebulae Spectrograph (PNS), along with derived two-dimensional velocity and velocity dispersion fields, and the α parameters (i.e. the number of PNe per unit luminosity). We also present new deep absorption-line long-slit kinematics for three galaxies in the sample, obtained with the FOcal Reducer and low dispersion Spectrograph (FORS2) at the Very Large Telescope (VLT). We extend this study to include additional 10 early-type galaxies with PNe radial velocity measurements available from the literature, including previous PNS studies, in order to obtain …

An Infrared Imaging Method For High-Throughput Combinatorial Investigation Of Hydrogenation-Dehydrogenation And New Phase Formation Of Thin Films, H. Oguchi, Jason R. Hattrick-Simpers, I. Takeuchi, E. J. Heilweil, L. A. Bendersky

Faculty Publications

We have developed an infrared imaging setup enabling in situ infrared images to be acquired, and expanded on capabilities of an infrared imaging as a high-throughput screening technique, determination of a critical thickness of a Pd capping layer which significantly blocks infrared emission from below, enhancement of sensitivity to hydrogenation and dehydrogenation by normalizing raw infrared intensity of a Mg thin film to an inert reference, rapid and systematic screening of hydrogenation and dehydrogenation properties of a Mg–Ni composition spread covered by a thickness gradient Pd capping layer, and detection of formation of a Mg₂Si phase in a …

Spin Dynamics For Wave Packets In Rashba Systems, Bailey C. Hsu, Jean F. Van Huele

Faculty Publications

We explore spin dynamics for localized wave packets in Rashba systems using spin quantum propagators. We derive exact (one-dimensional) and approximate (two-dimensional) analytic expressions for the propagators and apply them to Gaussian wave packets to obtain localized solutions of systems manifesting Rashba interactions. We observe and describe the evolution of the wave packets. We identify characteristic structures in the wave-packet evolution and look for features with specific spintronics applications such as spin separation and spin accumulation. We discuss the relative importance of those features as a function of the Rashba coupling strength α and the width of the wave packet …

The Effect Of Copt Crystallinity And Grain Texturing On Properties Of Exchange-Coupled Fe/Copt Systems, H. Oguchi, A. Zambano, M. Yu, Jason R. Hattrick-Simpers, D. Banerjee, Y. Liu, Z. L. Wang, J. P. Liu, S. E. Lofland, D. Josell, I. Takeuchi

Faculty Publications

The effect of the crystallinity and the grain texturing of CoPt hard layers on exchange coupled Fe/CoPt soft/hard magnetic systems was studied using gradient thickness multilayer thin films. We have studied the hard layer structures by transmission electron microscopy and x-ray diffraction, and characterized the exchange coupling interaction through magnetization loops obtained by the magneto-optical Kerr effect measurement. We found that exchange coupling strongly depends on the crystalline characteristics of the CoPt hard layer. There is correlation between the mixture of different grain orientations of the CoPt hard layer and coupling efficiency. In particular, interlayer coupling is enhanced when there …

Hierarchical Modeling: Biogeochemical Processes And Mechanisms That Drive Clay Nano-And Microfabric Development, Kenneth J. Curry, Richard H. Bennett, Paula J. Smithka, Matthew H. Hulbert

Faculty Publications

Conceptual scientific models of clay and clay fabric development can be constructed profitably by considering chemical and physical systems in terms of an ordered hierarchy. We develop here a hierarchical model of early stages of marine sediment development identifying processes and focusing on mechanisms. While the focus of our model is on mechanisms, the physical aspects of the hierarchy are cast in terms of the nanometer (nanofabric) level of organization of sediment fabric. This level is nested below the micrometer (microfabric) level that includes aggregates of clay signatures and is nested above the molecular level that includes edges and faces …

Lorentz Violation And Alpha-Decay, Brett David Altschul

Faculty Publications

Relating the effective Lorentz violation coefficients for composite particles to the coefficients for their constituent fields is a challenging problem. We calculate the Lorentz violation coefficients relevant to the dynamics of an α particle in terms of proton and neutron coefficients. The α-particle coefficients would lead to anisotropies in the α decays of nuclei, and because the decay process involves quantum tunneling, the effects of any Lorentz violations could be exponentially enhanced.

Using A Mathematical Model Of Cadherin-Based Adhesion To Understand The Function Of The Actin Cytoskeleton, J. C. Dallon, Elijah Newren, Marc Hansen

Faculty Publications

The actin cytoskeleton plays a role in cell-cell adhesion but its specific function is not clear. Actin might anchor cadherins or drive membrane protrusions in order to facilitate cell-cell adhesion. Using a mathematical model of the forces involved in cadherin-based adhesion we investigate its possible functions. The immersed boundary method is used to model the cell membrane and cortex with cadherin binding forces added as linear springs. The simulations indicate that cells in suspension can develop normal cell-cell contacts without actin-based cadherin anchoring or membrane protrusions. The cadherins can be fixed in the membrane or free to move and the …

Time Reversal Of Continuous-Wave, Steady-State Signals In Elastic Media, Brian E. Anderson, Robert A. Guyer, Paul A. Johnson, Timothy J. Ulrich

Faculty Publications

Experimental observations of spatial focusing of continuous-wave, steady-state elastic waves in a reverberant elastic cavity using time reversal are reported here. Spatially localized focusing is achieved when multiple channels are employed, while a single channel does not yield such focusing. The amplitude of the energy at the focal location increases as the square of the number of channels used, while the amplitude elsewhere in the medium increases proportionally with the number of channels used. The observation is important in the context of imaging in solid laboratory samples as well as problems involving continuous-wave signals in Earth.

Author Entropy Vs. File Size In The Gnome Suite Of Applications, Jason R. Casebolt, Daniel P. Delorey, Charles D. Knutson, Jonathan Krein, Alexander C. Maclean

Faculty Publications

We present the results of a study in which author entropy was used to characterize author contributions per file. Our analysis reveals three patterns: banding in the data, uneven distribution of data across bands, and file size dependent distributions within bands. Our re- sults suggest that when two authors contribute to a file, large files are more likely to have a dominant author than smaller files.

Psoda: Open Source Phylogenetic Search And Dna Analysis, Mark J. Clement, Quinn O. Snell, Kenneth Sundberg

Faculty Publications

PSODA is an open source (GPL v2) sequence analysis package that implements sequence alignment using biochemical properties, phylogeny search with parsimony or maximum likelihood criteria and selection detection using biochemical properties (TreeSAAP ). PSODA is compatible with PAUP and the search algorithms are competitive with those in PAUP. PSODA also adds a basic scripting language to the PAUP block, making it possible to easily create advanced meta-searches. Because PSODA is open-source, we have also been able to easily add in advanced search techniques and characterize the benefits of various optimizations. PSODA is available for Macintosh OS X, Windows, and Linux.

Hardware Accelerated Sequence Alignment With Traceback, Scott Lloyd, Quinn O. Snell

Faculty Publications

Biological sequence alignment is an essential tool used in molecular biology and biomedical applications. The growing volume of genetic data and the complexity of sequence alignment present a challenge in obtaining alignment results in a timely manner. Known methods to accelerate alignment on reconfigurable hardware only address sequence comparison, limit the sequence length, or exhibit memory and I/O bottlenecks. A space-efficient, global sequence alignment algorithm and architecture is presented that accelerates the forward scan and traceback in hardware without memory and I/O limitations. With 256 processing elements in FPGA technology, a performance gain over 300 times that of a desktop …

Synthesizing Correlated Rss News Articles Based On A Fuzzy Equivalence Relation, Yiu-Kai D. Ng, Maria Soledad Pera

Faculty Publications

Tens of thousands of news articles are posted on-line each day, covering topics from politics to science to current events. To better cope with this overwhelming volume of information, RSS (news) feeds are used to categorize newly posted articles. Nonetheless, most RSS users must filter through many articles within the same or different RSS feeds to locate articles pertaining to their particular interests. Due to the large number of news articles in individual RSS feeds, there is a need for further organizing articles to aid users in locating non-redundant, informative, and related articles of interest quickly. In this paper, we …

Effective Medium Theory, Rough Surfaces, And Moth’S Eyes, David D. Allred, Zephne Larsen, Joseph Muhlestein, R. Steven Turley, Anthony Willey

Faculty Publications

Optics in the extreme ultraviolet (XUV) have important applications in microelectronics, microscopy, space physics, and in imaging plasmas. Because of the short wavelengths involved in these applications, it is critical to account for interfacial roughness to accurately predict the reflection and absorption of XUV optics. This paper examines two possible effects of roughness on optical absorption, non-specular reflection and enhanced transmission and compares these to measured experimental data on a rough Y2O3 thin film.