Physical Sciences and Mathematics Commons^™

Comment On "Generation Of Cold Low Divergent Atomic Beam Of Indium By Laser Ablation", A. Denning, A. Booth, S. Lee, M. Amonson, Scott D. Bergeson

Faculty Publications

We present measurements of the velocity distribution of calcium atoms in an atomic beam generated using a dual-stage laser back-ablation apparatus. Distributions are measured using a velocity selective Doppler time-of-flight technique. They are Boltzmann-like with rms velocities corresponding to temperatures above the melting point for calcium. Contrary to a recent report in the literature, this method does not generate a subthermal atomic beam.

Island Method For Estimating The Statistical Significance Of Profile-Profile Alignment Scores, Aleksandar Poleksic

Faculty Publications

Background: In the last decade, a significant improvement in detecting remote similarity between protein sequences has been made by utilizing alignment profiles in place of amino-acid strings. Unfortunately, no analytical theory is available for estimating the significance of a gapped alignment of two profiles. Many experiments suggest that the distribution of local profile-profile alignment scores is of the Gumbel form. However, estimating distribution parameters by random simulations turns out to be computationally very expensive.

Results: We demonstrate that the background distribution of profile-profile alignment scores heavily depends on profiles' composition and thus the distribution parameters must be estimated …

Problem-Based Instructional Tasks, Larry Leutzinger

Faculty Publications

No abstract provided.

Meaningful Distributed Instruction— Developing Number Sense, Edward C. Rathmell

Faculty Publications

What Is Number Sense?

The primary goal for elementary and middle school mathematics is to help students learn to use numbers meaningfully, reasonably and flexibly in everyday life. This means that students must develop a deep understanding of

-- numbers and operations,
-- when operations can appropriately be used to solve problems, and
-- judging the reasonableness of their solutions to problems.

They also need to develop attitudes so they

-- believe they can make sense of mathematics, and
-- habitually try to make sense of mathematics.

In other words, students need to develop number sense.

Understandings Needed for Number …

Health Literacy In The Mathematics Classroom: The Iowa Core Curriculum As An Opportunity To Deepen Students’ Understanding Of Mathematics, Elana Joram, Susan Roberts-Dobie, Nadene Davidson

Faculty Publications

By 2012, all high schools in Iowa will be required to incorporate the new Iowa Core Curriculum, followed by elementary and middle schools in 2014 (Iowa Department of Education, 2009). The Iowa Core Curriculum addresses the question: "How is Iowa's educational system preparing our youth for successful lives in the 21st-century global environment?" (Davidson, 2009). It consists of core content standards, and identifies essential concepts and skills for content areas. The Iowa Core Curriculum also includes the ―21st Century Skills‖ of ―health, financial, technology, and civic literacy, and employability skills. These skills are to be infused into existing subject matter …

Skittles Chocolate Mix Color Distribution: A Chi-Square Experience, David R. Duncan, Bonnie H. Litwiller

Faculty Publications

In teaching statistical processes, it is important that there be application to realworld settings and activities. When this is done, students are more likely to see the meaning of the steps being developed.

One such activity involves using the Chi-Square statistical test and its applications to counting Skittles Chocolate Mix candies. Many students are aware that these candies come in five different flavors: Brownie Batter (BB), Vanilla (V), Chocolate Caramel (CC), S’mores (S), and Chocolate Pudding (CP).

Measurement Of Beauty Photoproduction Using Decays Into Muons In Dijet Events At Hera, S. Chekanov, M. Derrick, S. Magill, B. Musgrave, D. Nicholass, J. Repond, R. Yoshida, Margarita C. K. Mattingly, P. Antonioli, G. Bari, L. Bellagamba, D. Boscherini, A. Bruni, G. Bruni, F. Cindolo, M. Corradi, G. Iacobucci, A. Margotti, R. Nania, A. Polini, S. Antonelli, M. Basile, M. Bindi, L. Cifarelli, A. Contin, S. De Pasquale, G. Sartorelli, A. Zichichi, D. Bartsch, I. Brock, H. Hartmann

Faculty Publications

Beauty photoproduction in dijet events has been measured at HERA with the ZEUS detector using an integrated luminosity of 126 pb-1. Beauty was identified in events with a muon in the final state by using the transverse momentum of the muon relative to the closest jet. Lifetime information from the silicon vertex detector was also used; the impact parameter of the muon with respect to the primary vertex was exploited to discriminate between signal and background. Cross sections for beauty production as a function of the muon and the jet variables as well as dijet correlations are compared to QCD …

Measurement And Simulation Of Laser-Induced Fluorescence From Nonequilibrium Ultracold Neutral Plasmas, A. Denning, Scott D. Bergeson, F. Robicheaux

Faculty Publications

We report measurements and simulations of laser-induced fluorescence in ultracold neutral plasmas. We focus on the earliest times, when the plasma equilibrium is evolving and before the plasma expands. In the simulation, the ions interact via the Yukawa potential in a small cell with wrapped boundary conditions. We solve the optical Bloch equation for each ion in the simulation as a function of time. Both the simulation and experiment show the initial increase in ion fluorescence, disorder-induced heating, and coherent oscillation of the rms ion velocity. Detailed modeling of the fluorescence signal makes it possible to use fluorescence spectroscopy to …

Petromode, Eric H. Christiansen

Faculty Publications

PetroMode is an Excel spreadsheet that can be used to (1) calculate the modal composition of a rock given the elemental composition of the rock and (2) calculate the major element mass balance to test the derivation of a daughter liquid by removal of minerals from a parent liquid (fractional crystallization).

A Measurement Of The Q2, W And T Dependences Of Deeply Virtual Compton Scattering At Hera, S. Chekanov, M. Derrick, S. Magill, B. Musgrave, D. Nicholass, J. Repond, R. Yoshida, Margarita Mattingly, P. Antonioli, G. Bari, L. Bellagamba, D. Boscherini, A. Bruni, G. Bruni, F. Cindolo, M. Corradi, G. Iacobucci, A. Margotti, R. Nania, A. Polini, S. Antonelli, M. Basile, M. Bindi, L. Cifarelli, A. Contin, S. De Pasquale, G. Sartorelli, A. Zichichi, D. Bartsch, I. Brock, H. Hartmann

Faculty Publications

Deeply virtual Compton scattering, γ*p→γp has been measured in e+p collisions at HERA with the ZEUS detector using an integrated luminosity of 61.1 pb-1. Cross sections are presented as a function of the photon virtuality, Q2, and photon-proton centre-of-mass energy, W, for a wide region of the phase space, Q2 > 1.5GeV2 and 40 < W < 170GeV. A subsample of events in which the scattered proton is measured in the leading proton spectrometer, corresponding to an integrated luminosity of 31.3 pb-1, is used for the first direct measurement of the differential cross section as a function of t, where t is the square of the four-momentum transfer at the proton vertex. © SISSA 2009.

Measurement Of The Charm Fragmentation Function In D* Photoproduction At Hera, S. Chekanov, M. Derrick, S. Magill, B. Musgrave, D. Nicholass, J. Repond, R. Yoshida, Margarita C. K. Mattingly, P. Antonioli, G. Bari, L. Bellagamba, D. Boscherini, A. Bruni, G. Bruni, F. Cindolo, M. Corradi, G. Iacobucci, A. Margotti, R. Nania, A. Polini, S. Antonelli, M. Basile, M. Bindi, L. Cifarelli, A. Contin, S. De Pasquale, G. Sartorelli, A. Zichichi, D. Bartsch, I. Brock, H. Hartmann

Faculty Publications

The charm fragmentation function has been measured in D* photoproduction with the ZEUS detector at HERA using an integrated luminosity of 120 pb-1. The fragmentation function is measured versus z = (E +p||)D* /2Ejet, where E is the energy of the D * meson and p|| is the longitudinal momentum of the D * meson relative to the axis of the associated jet of energy Ejet. Jets were reconstructed using the kT clustering algorithm and required to have transverse energy larger than 9GeV. The D* meson associated with the jet was required to have a transverse momentum larger than 2GeV. …

The Malina Oceanographic Expedition: How Do Changes In Ice Cover, Permafrost And Uv Radiation Impact On Biodiversity And Biogeochemical Fluxes In The Arctic Ocean?, Phillippe Massicotte, Rainer Amon, David Antoine, Philippe Archambault, Sergio Balzano, Simon Bélanger, Ronald Benner, Dominique Boeuf, Annick Bricaud, Flavienne Bruyant, Gwenaëlle Chaillou, Malik Malik, Bruno Charrière, Jing Chen, Hervé Claustre, Pierre Coupel, Nicole Delsaut, David Doxaran, Et. Al.

Faculty Publications

The MALINA oceanographic campaign was conducted during summer 2009 to investigate the carbon stocks and the processes controlling the carbon fluxes in the Mackenzie River estuary and the Beaufort Sea. During the campaign, an extensive suite of physical, chemical and biological variables was measured across seven shelf–basin transects (south-north) to capture the meridional gradient between the estuary and the open ocean. Key variables such as temperature, absolute salinity, radiance, irradiance, nutrient concentrations, chlorophyll-a concentration, bacteria, phytoplankton and zooplankton abundance and taxonomy, and carbon stocks and fluxes were routinely measured onboard the Canadian research icebreaker CCGS Amundsen and from a barge …

Detrital-Zircon Geochronology Of The Metasedimentary Rocks Of North-Western Graham Land, David L. Barbeau Jr, Justin T. Davis, Kendra E. Murray, Victor Valencia, George E. Gehrels, Khandaker M. Zahid, David J. Gombosi

Faculty Publications

Metasedimentary rocks constitute an important but comparatively poorly understood part of the Antarctic Peninsula. Herein we report single-grain U-Pb detrital-zircon ages from samples of the Trinity Peninsula and Botany Bay Groups of north-western Graham Land. All studied samples are dominated by a large and narrowly defined population of late Palaeozoic zircons. Significant early–middle Palaeozoic and minor Neoproterozoic and Mesoproterozoic sub-populations constitute the majority of pre-Carboniferous grains. These detrital-zircon age populations are consistent with sediment derivation entirely from western Gondwana sources. Despite the clear Gondwana signatures, our data suggest that the Trinity Peninsula Group province was either a parautochthonous peri-Gondwanan terrane …

Conceptual Previews In Preparation For The Next Unit Of Instruction, Michele Carnahan, Bridgette Stevens

Faculty Publications

Understanding meanings of operations and how they relate to one another is an important mathematical goal for students in fourth grade (National Council of Teachers of Mathematics, 2000). Using pictures, diagrams, or concrete materials to model multiplication helps students learn about factors and how their products represent various contexts. The foundation of understanding how operations of multiplication and division relate to one another deepens the understanding of the composition of numbers. Discussing different types of problems that can be solved using multiplication and division is important, along with the ability to decompose numbers. When students can work among these relationships …

The Iowa Core Curriculum And Me: How My Teaching Of Mathematics Methods Will Change, Catherine M. Miller

Faculty Publications

It is an exciting time to be a mathematics educator in Iowa! We are joining the other 49 states by having a set of state standards. In fact, Iowa is exceeding federal expectations by having a curriculum to inform the work of teachers and school administrators. Because of this, we enter an era of change in Iowa and, as we know, change is never easy. To succeed in implementing the Iowa Core Curriculum (ICC) in mathematics all teachers need to learn about it and have help in implementing its core ideas and content. This includes teachers who will begin their …

Global Distribution Of Atmospheric Phosphorus Sources, Concentrations And Deposition Rates, And Anthropogenic Impacts, Natalie Mahowald, Timothy D. Jickells, Alex R. Baker, Paulo Artaxo, Claudia R. Benitez-Nelson, Gilles Bergametti, Tami C. Bond, Ying Chen, David D. Cohen, Barak Herut, Nilgun Kubilay, Remi Losno, Chao Luo, Willy Maenhaut, Kenneth A. Mcgee, Gregory S. Okin, Ronald L. Siefert, Seigen Tsukuda

Faculty Publications

[1] A worldwide compilation of atmospheric total phosphorus (TP) and phosphate (PO4) concentration and deposition flux observations are combined with transport model simulations to derive the global distribution of concentrations and deposition fluxes of TP and PO4. Our results suggest that mineral aerosols are the dominant source of TP on a global scale (82%), with primary biogenic particles (12%) and combustion sources (5%) important in nondusty regions. Globally averaged anthropogenic inputs are estimated to be ∼5 and 15% for TP and PO4, respectively, and may contribute as much as 50% to the deposition over the oligotrophic ocean where productivity may …

Decision Tree Ensemble: Small Heterogeneous Is Better Than Large Homogeneous, Mike Gashler, Christophe G. Giraud-Carrier, Tony R. Martinez

Faculty Publications

Using decision trees that split on randomly selected attributes is one way to increase the diversity within an ensemble of decision trees. Another approach increases diversity by combining multiple tree algorithms. The random forest approach has become popular because it is simple and yields good results with common datasets. We present a technique that combines heterogeneous tree algorithms and contrast it with homogeneous forest algorithms. Our results indicate that random forests do poorly when faced with irrelevant attributes, while our heterogeneous technique handles them robustly. Further, we show that large ensembles of random trees are more susceptible to diminishing returns …

Learning-Based Fusion For Data Deduplication, Sabra Dinerstein, Parris K. Egbert, Stephen W. Clyde, Jared Dinerstein

Faculty Publications

Rule-based deduplication utilizes expert domain knowledge to identify and remove duplicate data records. Achieving high accuracy in a rule-based system requires the creation of rules containing a good combination of discriminatory clues. Unfortunately, accurate rule-based deduplication often requires significant manual tuning of both the rules and the corresponding thresholds. This need for manual tuning reduces the efficacy of rule-based deduplication and its applicability to real-world data sets. No adequate solution exists for this problem. We propose a novel technique for rule-based deduplication. We apply individual deduplication rules, and combine the resultant match scores via learning-based information fusion. We show empirically …

Nowhere To Hide: Finding Plagiarized Documents Based On Sentence Similarity, Nathaniel Gustafson, Yiu-Kai D. Ng, Maria Soledad Pera

Faculty Publications

Plagiarism is a serious problem that infringes copyrighted documents/materials, which is an unethical practice and decreases the economic incentive received by authors (owners) of the original copies. Unfortunately, plagiarism is getting worse due to the increasing number of online publications on the Web, which facilitates locating and paraphrasing information. In solving this problem, we propose a novel plagiarism-detection method, called SimPaD, which (i) establishes the degree of resemblance between any two documents D1 and D2 based on their sentence-to-sentence similarity computed by using pre-defined word-correlation factors, and (ii) generates a graphical view of sentences that are similar (or the same) …

Forcing And Dynamics Of Seafloor-Water Column Exchange On A Broad Continental Shelf, William B. Savidge, Ann Gargett, Richard A. Jahnke, James R. Nelson, Dana K. Savidge, R Timothy Short, George Voulgaris

Faculty Publications

Relict sediments of elevated permeability characterize the majority of continental shelves globally (Emery, 1968). In these settings, interactions between benthic boundary layer (BBL) flows and seabed topography generate pressure fluctuations that drive advective and dispersive porewater transport, dramatically increasing the magnitude and variability of porewater solute and particulate exchange across the sediment-water interface (Huettel et al., 1996; Huettel and Rusch, 2000). On broad shallow shelves with a relatively large area-to-volume ratio, the seafloor’s role is magnified. Energetic events may reorganize bedforms across a significant fraction of the shelf, leading to altered exchange dynamics that may persist long after the organizing …

Sequence Alignment With Traceback On Reconfigurable Hardware, Scott Lloyd, Quinn O. Snell

Faculty Publications

Biological sequence alignment is an essential tool used in molecular biology and biomedical applications. The growing volume of genetic data and the complexity of sequence alignment present a challenge in obtaining alignment results in a timely manner. Known methods to accelerate alignment on reconfigurable hardware only address sequence comparison, limit the sequence length, or exhibit memory and I/O bottlenecks. A space-efficient, global sequence alignment algorithm and architecture is presented that accelerates the forward scan and traceback in hardware without memory and I/O limitations. With 256 processing elements in FPGA technology, a performance gain over 300 times that of a desktop …

Search For Gravitational-Wave Bursts From Soft Gamma Repeaters, B. Abbott, R. Abbott, R. Adhikari, P. Ajith, B. Allen, G. Allen, R. S. Amin, S. B. Anderson, W. G. Anderson, M. A. Arain, M. Araya, H. Armandula, P. Armor, Y. Aso, S. Aston, P. Aufmuth, C. Aulbert, S. Babak, S. Ballmer, H. Bantilan, B. C. Barish, C. Barker, D. Barker, B. Barr, P. Barriga, M. A. Barton, I. Bartos, M. Bastarrika, K. Bayer, J. Betzwieser, P. T. Beyersdorf, Tiffany Z. Summerscales

Faculty Publications

We present a LIGO search for short-duration gravitational waves (GWs) associated with soft gamma ray repeater (SGR) bursts. This is the first search sensitive to neutron star f modes, usually considered the most efficient GW emitting modes. We find no evidence of GWs associated with any SGR burst in a sample consisting of the 27 Dec. 2004 giant flare from SGR 1806-20 and 190 lesser events from SGR 1806-20 and SGR 1900+14. The unprecedented sensitivity of the detectors allows us to set the most stringent limits on transient GW amplitudes published to date. We find upper limit estimates on the …

Antiphase Ordering And Surface Phases In Lithium Aluminate, Richard R. Vanfleet, J. A. Simmons, D. W. Hill, M. M. C. Chou, B. H. Chai

Faculty Publications

Antiphase domains are seen in single crystal gamma lithium aluminate (gamma-LiAlO2) with 16.7 nm periodicity in the <110> direction. Alternate domains have a (1/2) [001] shift. Beta phase lithium aluminate (beta-LiAlO2) is seen to form on the surface of the as-received wafers with an epitaxial strain limited relationship with the bulk gamma phase. The orthorhombic beta phase aligns with the a and b axes (0.528 and 0.630 nm) matching with the tetragonal gamma phase's a and c axes (0.5168 and 0.6268 nm). The gamma and beta phases are seen to have different etch rates. The beta phase converts back to the …

Coherent Control Of Nanomagnet Dynamics Via Ultrafast Spin Torque Pulses, Samir Garzon, Longfei Ye, Richard A. Webb, Thomas M. Crawford, Mark Covington, Shehzaad Kaka

Faculty Publications

We demonstrate reliable manipulation of the magnetization dynamics of a precessing nanomagnet by precisely controlling the spin transfer torque on the subnanosecond time scale. Using a simple pulse shaping scheme consisting of two ultrafast spin torque pulses with variable amplitudes and delay, we demonstrate coherent control over the precessional orbits and the ability to tune the switching probability of a nanomagnet at room temperature and 77 K. Our measurements suggest that appropriately shaped spin transfer can be used to efficiently manipulate the orientation of a free layer nanomagnet, thus providing an alternative for spin torque driven spintronic devices.

Restoration Of Dredged Canals In Wetlands: A Comparison Of Methods, Joseph Baustian, R. Eugene Turner, Nancy F. Walters, David P. Muth

Faculty Publications

A comparison of two methods for restoring dredged canals to wetlands was examined at the Jean Lafitte National Historical Park and Preserve’s Barataria Preserve Unit near New Orleans, LA. Both northern and southern canals had the remnant dredged spoil material returned to the canal, but the southern canal had additional sediment pumped in from a nearby lake. The water depth in the southern canal shallowed significantly from 1.2 to 0.4 m following backfilling and sediment addition, while the depth of the northern canal (which received no additional sediment) remained unchanged following backfilling. Neither site had complete soil restoration, but the …

Halothiobacillus Neapolitanus Carboxysomes Sequester Heterologous And Chimeric Rubisco Species, Balaraj B. Menon, Zhicheng Dou, Sabine Heinhorst, Jessup M. Shively, Gordon C. Cannon

Faculty Publications

Background: The carboxysome is a bacterial microcompartment that consists of a polyhedral protein shell filled with ribulose 1,5-bisphosphate carboxylase/oxygenase (RubisCO), the enzyme that catalyzes the first step of CO(2) fixation via the Calvin-Benson-Bassham cycle. Methodology/Principal Findings: To analyze the role of RubisCO in carboxysome biogenesis in vivo we have created a series of Halothiobacillus neapolitanus RubisCO mutants. We identified the large subunit of the enzyme as an important determinant for its sequestration into alpha-carboxysomes and found that the carboxysomes of H. neapolitanus readily incorporate chimeric and heterologous RubisCO species. Intriguingly, a mutant lacking carboxysomal RubisCO assembles empty carboxysome shells of …

Controlling The Transmitted Field Into A Cylindrical Cloak's Hidden Region, Jeffrey S. Mcguirk, Peter J. Collins

Faculty Publications

Constitutive parameters for simplified cylindrical cloaks have been developed such that ε_zµ_θ and ε_zµ_r match those of the ideal cylindrical cloak. Although they are not perfect, simplified cylindrical cloaks have been shown to inherit many of the power-bending properties of the ideal cloak. However, energy is transmitted into simplified cloaks' hidden regions. Here, we develop a constraint equation that can be used to determine how closely field behavior within the simplified cylindrical cloak matches that of the ideal cloak. The deviation from this controlling equation can be reduced by controlling the cloak's parameter value, …

Extreme-Ultraviolet Polarimeter Utilizing Laser-Generated High-Order Harmonics, Nicole Brimhall, Matthew Turner, Nicholas Herrick, David D. Allred, R. Steven Turley, Michael Ware, Justin Peatross

Faculty Publications

We describe an extreme-ultraviolet (EUV) polarimeter that employs laser-generated high-order harmonics as the light source. The polarimeter is designed to characterize materials and thin films for use with EUV light. Laser high harmonics are highly directional with easily rotatable linear polarization, not typically available with other EUV sources. The harmonics have good wavelength coverage, potentially spanning the entire EUV from a few to a hundred nanometers. Our instrument is configured to measure reflectances from 14 to 30 nm and has ~180 spectral resolution (lambda/delta lambda). The reflection from a sample surface can be measured over a continuous range of incident …

Using Vagueness Measures To Re-Rank Documents Retrieved By A Fuzzy Set Information Retrieval Model, Stephen Lynn, Yiu-Kai D. Ng

Faculty Publications

Traditional information retrieval (IR) systems evaluate user queries and retrieve/rank documents based on matching keywords in user queries with words in documents. These exact word-matching and ranking approaches ignore too many relevant documents that do not contain the exact keywords as specified in a user query. Instead of considering these traditional approaches, we propose to retrieve documents using a fuzzy set IR model and rank retrieved documents for any vague query using the “vagueness score” of the documents based on the word senses as defined in WordNet. Using the vagueness scores, we rank the most highest “relevant” documents of a …

Beauty Photoproduction Using Decays Into Electrons At Hera, S. Chekanov, M. Derrick, S. Magill, B. Musgrave, D. Nicholass, J. Repond, R. Yoshida, Margarita C. K. Mattingly, P. Antonioli, G. Bari, L. Bellagamba, D. Boscherini, A. Bruni, G. Bruni, F. Cindolo, M. Corradi, G. Iacobucci, A. Margotti, R. Nania, A. Polini, S. Antonelli, M. Basile, M. Bindi, L. Cifarelli, A. Contin, S. De Pasquale, G. Sartorelli, A. Zichichi, D. Bartsch, I. Brock, H. Hartmann

Faculty Publications

Photoproduction of beauty quarks in events with two jets and an electron associated with one of the jets has been studied with the ZEUS detector at HERA using an integrated luminosity of 120pb-1. The fractions of events containing b quarks, and also of events containing c quarks, were extracted from a likelihood fit using variables sensitive to electron identification as well as to semileptonic decays. Total and differential cross sections for beauty and charm production were measured and compared with next-to-leading-order QCD calculations and MonteCarlo models. © 2008 The American Physical Society.