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Faculty Publications

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Articles 2341 - 2370 of 3797

Full-Text Articles in Physical Sciences and Mathematics

Si Cycle In The Cariaco Basin, Venezuela: Seasonal Variability In Silicate Availability And The Si:C:N Composition Of Sinking Particles, Robert Thunell, Claudia R. Benitez-Nelson, Frank Muller-Karger, Laura Lorenzoni, Kent Fanning, Mary Scranton, Ramon Varela, Yrene Astor Oct 2008

Si Cycle In The Cariaco Basin, Venezuela: Seasonal Variability In Silicate Availability And The Si:C:N Composition Of Sinking Particles, Robert Thunell, Claudia R. Benitez-Nelson, Frank Muller-Karger, Laura Lorenzoni, Kent Fanning, Mary Scranton, Ramon Varela, Yrene Astor

Faculty Publications

[1] A 9‐year time series of water column and sediment trap measurements was used to examine silicon cycling within the anoxic Cariaco Basin. The dynamic hydrographic regime within Cariaco Basin results in strong seasonal changes in nutrient availability and the Si:C:N of sinking particles. Upwelling in early winter injects silicic acid (Si(OH)4= ) and nitrate (NO3−) rich waters into the photic zone which stimulates primary production and results in opal fluxes in excess of 4 mmol Si m−2 d−1. However, even during upwelling, surface waters tend to be depleted (<1 >μM) in both Si(OH)4= and NO3− as a result …

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Enhancement Of Unusual Color In Aerial Video Sequences For Assisting Wilderness Search And Rescue, Bryan S. Morse, Nathan D. Rasmussen, Daniel Thornton Oct 2008

Enhancement Of Unusual Color In Aerial Video Sequences For Assisting Wilderness Search And Rescue, Bryan S. Morse, Nathan D. Rasmussen, Daniel Thornton

Faculty Publications

The use of aerial video for search and surveillance has been popularized by the increased use of camera-equipped unmanned aerial vehicles. For many search applications, objects may also be missed by observers due to their small size, brief visibility, or the inherent monotony of the scene. This paper presents a novel method for automatically emphasizing unusually colored objects to improve their detectability. We use a hue histogram and a local saliency measure to find unusually colored objects, then boost the saturation of these objects while desaturating more common colors, thus drawing the observer’s attention and facilitating video search.

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Hop-By-Hop Multicast Transport For Mobile Ad Hoc Wireless Networks, Manoj Pandey, Daniel Zappala Oct 2008

Hop-By-Hop Multicast Transport For Mobile Ad Hoc Wireless Networks, Manoj Pandey, Daniel Zappala

Faculty Publications

Multicast transport is a challenging problem because the source must provide congestion control and reliability for a tree, rather than a single path. This problem is made even more difficult in mobile ad hoc networks due to problems caused by contention, spatial reuse, and mobility. In this paper, we design a hop-by-hop multicast transport protocol, which pushes transport functionality into the core of the network. Although this requires per-flow state, a hop-by-hop approach simplifies congestion control, enables local recovery of lost packets, and provides low delay and efficient use of wireless capacity. We use a simulation study to demonstrate the …

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Scalable Multicast Routing For Ad Hoc Networks, Manoj Pandey, Daniel Zappala Oct 2008

Scalable Multicast Routing For Ad Hoc Networks, Manoj Pandey, Daniel Zappala

Faculty Publications

Routing in a mobile ad hoc network is challenging because nodes can move at any time, invalidating a previously-discovered route. Multicast routing is even more challenging, because a source needs to maintain a route to potentially many group members simultaneously. Providing scalable solutions to this problem typically requires building a hierarchy or an overlay network to reduce the cost of route discovery and maintenance. In this paper, we show that a much simpler alternative is possible, by using source specific semantics and relying on the unicast routing protocol to find all routes. This separation of concerns enables the multicast routing …

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Si Cycle In The Cariaco Basin, Venezuela: Seasonal Variability In Silicate Availability And The Si:C:N Composition Of Sinking Particles, Robert C. Thunell, Claudia Benitez-Nelson, Frank Muller-Karger, Laura Lorenzoni, Kent Fanning, Mary Scranton, Ramon Varela, Yrene Astor Oct 2008

Si Cycle In The Cariaco Basin, Venezuela: Seasonal Variability In Silicate Availability And The Si:C:N Composition Of Sinking Particles, Robert C. Thunell, Claudia Benitez-Nelson, Frank Muller-Karger, Laura Lorenzoni, Kent Fanning, Mary Scranton, Ramon Varela, Yrene Astor

Faculty Publications

A 9-year time series of water column and sediment trap measurements was used toexamine silicon cycling within the anoxic Cariaco Basin. The dynamic hydrographicregime within Cariaco Basin results in strong seasonal changes in nutrient availability and the Si:C:N of sinking particles. Upwelling in early winter injects silicic acid (Si(OH)4)and nitrate (NO3) rich waters into the photic zone which stimulates primary productionand results in opal fluxes in excess of 4 mmol Si m-2 d-1. However, even during upwelling, surface waters tend to be depleted (mM) in both Si(OH)4 and NO3 as aresult of rapid utilization. In most years, the upper water …

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Autonomous And Intelligent Radio Switching For Heterogeneous Wireless Networks, Qiuyi Duan, Charles D. Knutson, Lei Wang, Daniel Zappala Sep 2008

Autonomous And Intelligent Radio Switching For Heterogeneous Wireless Networks, Qiuyi Duan, Charles D. Knutson, Lei Wang, Daniel Zappala

Faculty Publications

As wireless devices continue to become more prevalent, heterogeneous wireless networks - in which communicating devices have at their disposal multiple types of radios - will become the norm. Communication between nodes in these networks ought to be as simple as possible; they should be able to seamlessly switch between different radios and network stacks on the fly in order to better serve the user. To make this a possibility, we consider the challenging problems of when two communicating devices should decide to switch to a different radio, and which radio they should choose. We design an Autonomous and Intelligent …

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High-Resolution Surveys Along The Hot Spot–Affected Galapagos Spreading Center: 1. Distribution Of Hydrothermal Activity, Edward T. Baker, Rachel M. Haymon, Joseph A. Resing, Scott M. White, Sharon L. Walker, Ken C. Macdonald, Ko-Ichi Nakamura Sep 2008

High-Resolution Surveys Along The Hot Spot–Affected Galapagos Spreading Center: 1. Distribution Of Hydrothermal Activity, Edward T. Baker, Rachel M. Haymon, Joseph A. Resing, Scott M. White, Sharon L. Walker, Ken C. Macdonald, Ko-Ichi Nakamura

Faculty Publications

The spatial density of hydrothermal activity along most mid-ocean ridges is a robust linear function of spreading rate (or magmatic budget), but extreme crustal properties may alter this relationship. In 2005–2006 we tested the effect of thickened crust on hydrothermal activity using high-resolution mapping of plumes overlying the hot spot–affected Galapagos Spreading Center from 95o to 89o42'W (~560 km of ridge crest). Plume mapping discovered only two active, high-temperature vent fields, subsequently confirmed by camera tows, though strong plume evidence indicated minor venting from at least six other locations. Total plume incidence (ph), the fraction of ridge …

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Spin Memristive Systems: Spin Memory Effects In Semiconductor Spintronics, Yuriy V. Pershin Dr, M. Di Ventra Sep 2008

Spin Memristive Systems: Spin Memory Effects In Semiconductor Spintronics, Yuriy V. Pershin Dr, M. Di Ventra

Faculty Publications

Recently, in addition to the well-known resistor, capacitor, and inductor, a fourth passive circuit element, named memristor, has been identified following theoretical predictions. The model example used in such case consisted in a nanoscale system with coupled ionic and electronic transport. Here, we discuss a system whose memristive behavior is based entirely on the electron-spin degree of freedom, which allows for a more convenient control than the ionic transport in nanostructures. An analysis of time-dependent spin transport at a semiconductor/ferromagnet junction provides a direct evidence of memristive behavior. Our scheme is fundamentally different from previously discussed schemes of memristive systems …

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Inclusive Ks0ks0 Resonance Production In Ep Collisions At Hera, S. Chekanov, M. Derrick, S. Magill, B. Musgrave, D. Nicholass, J. Repond, R. Yoshida, Margarita C. K. Mattingly, P. Antonioli, G. Bari, L. Bellagamba, D. Boscherini, A. Bruni, G. Bruni, F. Cindolo, M. Corradi, G. Iacobucci, A. Margotti, R. Nania, A. Polini, S. Antonelli, M. Basile, M. Bindi, L. Cifarelli, A. Contin, S. De Pasquale, G. Sartorelli, A. Zichichi, D. Bartsch, I. Brock, H. Hartmann Sep 2008

Inclusive Ks0ks0 Resonance Production In Ep Collisions At Hera, S. Chekanov, M. Derrick, S. Magill, B. Musgrave, D. Nicholass, J. Repond, R. Yoshida, Margarita C. K. Mattingly, P. Antonioli, G. Bari, L. Bellagamba, D. Boscherini, A. Bruni, G. Bruni, F. Cindolo, M. Corradi, G. Iacobucci, A. Margotti, R. Nania, A. Polini, S. Antonelli, M. Basile, M. Bindi, L. Cifarelli, A. Contin, S. De Pasquale, G. Sartorelli, A. Zichichi, D. Bartsch, I. Brock, H. Hartmann

Faculty Publications

Inclusive KS0KS0 production in ep collisions at the DESY ep collider HERA was studied with the ZEUS detector using an integrated luminosity of 0.5fb-1. Enhancements in the mass spectrum were observed and are attributed to the production of f2(1270)/a20(1320), f2′(1525) and f0(1710). Masses and widths were obtained using a fit which takes into account theoretical predictions based on SU(3) symmetry arguments, and are consistent with the Particle Data Group values. The f0(1710) state, which has a mass consistent with a glueball candidate, was observed with a statistical significance of 5 standard deviations. However, if this state is the same as …

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Oriented Cell Growth On Self-Assembled Bacteriophage M13 Thin Films, Jianhua Rong, L. Andrew Lee, Kai Li, Brandon Harp, Charlene M. Mello, Zhongwei Niu, Qian Wang Sep 2008

Oriented Cell Growth On Self-Assembled Bacteriophage M13 Thin Films, Jianhua Rong, L. Andrew Lee, Kai Li, Brandon Harp, Charlene M. Mello, Zhongwei Niu, Qian Wang

Faculty Publications

Fibrillar M13 bacteriophages were used as basic building blocks to generate thin films with aligned nanogrooves, which, upon chemical grafting with RGD peptides, guide cell alignment and orient the cell outgrowth along defined directions.

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Lateral Circulation And Suspended Sediment Transport In A Curved Estuarine Channel: Winyah Bay, Sc, Usa, Yong Hoon Kim, George Voulgaris Sep 2008

Lateral Circulation And Suspended Sediment Transport In A Curved Estuarine Channel: Winyah Bay, Sc, Usa, Yong Hoon Kim, George Voulgaris

Faculty Publications

Shipborne vertical profiles of flow and suspended sediment concentration collected on a transect, across a curved, nonsymmetrical estuarine channel are presented. Analysis of the transient cross-channel momentum balance equation shows that the lateral circulation pattern is controlled by the interaction between centrifugal and lateral baroclinic forcings although those two might not be necessarily in balance as suggested earlier by Seim and Gregg (1997). Instead, differential along-channel advection and local acceleration appear to influence greatly lateral circulation dynamics. During ebb when the water column is highly stratified, the interaction between centrifugal acceleration and opposite-directed lateral baroclinic forcing results in weak lateral …

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Deep Inelastic Inclusive And Diffractive Scattering At Q2 Values From 25 To 320 Gev2 With The Zeus Forward Plug Calorimeter, S. Chekanov, M. Derrick, S. Magill, B. Musgrave, D. Nicholass, J. Repond, R. Yoshida, Margarita C. K. Mattingly, M. Jechow, N. Pavel, P. Antonioli, G. Bari, L. Bellagamba, D. Boscherini, A. Bruni, G. Bruni, F. Cindolo, M. Corradi, G. Iacobucci, A. Margotti, R. Nania, A. Polini, S. Antonelli, M. Basile, M. Bindi, L. Cifarelli, A. Contin, S. De Pasquale, G. Sartorelli, A. Zichichi, D. Bartsch Sep 2008

Deep Inelastic Inclusive And Diffractive Scattering At Q2 Values From 25 To 320 Gev2 With The Zeus Forward Plug Calorimeter, S. Chekanov, M. Derrick, S. Magill, B. Musgrave, D. Nicholass, J. Repond, R. Yoshida, Margarita C. K. Mattingly, M. Jechow, N. Pavel, P. Antonioli, G. Bari, L. Bellagamba, D. Boscherini, A. Bruni, G. Bruni, F. Cindolo, M. Corradi, G. Iacobucci, A. Margotti, R. Nania, A. Polini, S. Antonelli, M. Basile, M. Bindi, L. Cifarelli, A. Contin, S. De Pasquale, G. Sartorelli, A. Zichichi, D. Bartsch

Faculty Publications

Deep inelastic scattering and its diffractive component, e p → e′ γ* p → e′ X N, have been studied at HERA with the ZEUS detector using an integrated luminosity of 52.4 pb-1. The MX method has been used to extract the diffractive contribution. A wide range in the centre-of-mass energy W (37-245 GeV), photon virtuality Q2 (20-450 GeV2) and mass MX (0.28-35 GeV) is covered. The diffractive cross section for 2 < MX < 15 GeV rises strongly with W, the rise becoming steeper as Q2 increases. The data are also presented in terms of the diffractive structure function, F2D (3), of the proton. For fixed Q2 and fixed MX, xP F2D (3) shows a strong rise as xP → 0, where xP is the fraction of the proton momentum carried by the pomeron. For Bjorken-x < 1 × 10-3, xP F2D (3) shows positive log Q2 scaling violations, while for x ≥ 5 × 10-3 negative scaling violations are observed. The diffractive structure function is compatible with being leading twist. The data show that Regge factorisation is broken. © 2008 Elsevier B.V. All rights reserved.

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Improving Live Sequence Chart To Automata Transformation For Verification, Rahul Kumar, Eric G. Mercer Aug 2008

Improving Live Sequence Chart To Automata Transformation For Verification, Rahul Kumar, Eric G. Mercer

Faculty Publications

This paper presents a Live Sequence Chart (LSC) to automata transformation algorithm that enables the verification of communication protocol implementations. Using this LSC to automata transformation a communication protocol implementation can be verified using a single verification run as opposed to previous techniques that rely on a three stage verification approach. The novelty and simplicity of the transformation algorithm lies in its placement of accept states in the automata generated from the LSC. We present in detail an example of the transformation as well as the transformation algorithm. Further, we present a detailed analysis and an empirical study comparing the …

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A Secure Group Communication Architecture For Autonomous Unmanned Aerial Vehicles, Adrian N. Phillips, Barry E. Mullins, Richard Raines, Rusty O. Baldwin Aug 2008

A Secure Group Communication Architecture For Autonomous Unmanned Aerial Vehicles, Adrian N. Phillips, Barry E. Mullins, Richard Raines, Rusty O. Baldwin

Faculty Publications

This paper investigates the application of a secure group communication architecture to a swarm of autonomous unmanned aerial vehicles (UAVs). A multicast secure group communication architecture for the low earth orbit (LEO) satellite environment is evaluated to determine if it can be effectively adapted to a swarm of UAVs and provide secure, scalable, and efficient communications. The performance of the proposed security architecture is evaluated with two other commonly used architectures using a discrete event computer simulation developed using MATLAB. Performance is evaluated in terms of the scalability and efficiency of the group key distribution and management scheme when the …

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Precipitation Rates And Atmospheric Heat Transport During The Cenomanian Greenhouse Warming In North America: Estimates From A Stable Isotope Mass-Balance Model, David F. Ufnar, Greg A. Ludvigson, Luis González, Darren R. Gröcke Aug 2008

Precipitation Rates And Atmospheric Heat Transport During The Cenomanian Greenhouse Warming In North America: Estimates From A Stable Isotope Mass-Balance Model, David F. Ufnar, Greg A. Ludvigson, Luis González, Darren R. Gröcke

Faculty Publications

Stable isotope mass-balance modeling results of meteoric δ18O values from the Cenomanian Stage of the Cretaceous Western Interior Basin (KWIB) suggest that precipitation and evaporation fluxes were greater than that of the present and significantly different from simulations of Albian KWIB paleohydrology. Sphaerosiderite meteoric δ18O values have been compiled from the Lower Tuscaloosa Formation of southwestern Mississippi (25°N paleolatitude), The Dakota Formation Rose Creek Pit, Fairbury Nebraska (35°N) and the Dunvegan Formation of eastern British Columbia (55°N paleolatitude). These paleosol siderite δ18O values define a paleolatitudinal gradient ranging from − 4.2‰ VPDB at 25°N …

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Recombination Fluorescence In Ultracold Neutral Plasmas, Scott D. Bergeson, F. Robicheaux Aug 2008

Recombination Fluorescence In Ultracold Neutral Plasmas, Scott D. Bergeson, F. Robicheaux

Faculty Publications

We present the first measurements and simulations of recombination fluorescence from ultracold neutral calcium plasmas. This method probes three-body recombination at times less than 1 µs, shorter than previously published time scales. For the lowest initial electron temperatures, the recombination rate scales with the density as n22, significantly slower than the predicted n3. Recombination fluorescence opens a new diagnostic window in ultracold plasmas. In most cases it probes deeply bound level populations that depend critically on electron energetics. However, a perturbation in the calcium 4snd Rydberg series allows our fluorescence measurements to probe the population in weakly bound levels that …

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Structure Of The Thioredoxin-Like Domain Of Yeast Glutaredoxin 3, Lydia M. Gibson, Nin N. Dingra, Caryn E. Outten, Lukasz Lebioda Aug 2008

Structure Of The Thioredoxin-Like Domain Of Yeast Glutaredoxin 3, Lydia M. Gibson, Nin N. Dingra, Caryn E. Outten, Lukasz Lebioda

Faculty Publications

Yeast glutaredoxin 3 (Grx3) is a cytosolic protein that regulates the activity of the iron-responsive transcriptional activator Aft1. This member of the monothiol glutaredoxin family contains a thioredoxin-like domain and a glutaredoxin-like domain, which both possess a monothiol active site. The crystal structure of the thioredoxin-like domain has been determined at 1.5 Å resolution and represents the first published structure of this domain for the monothiol glutaredoxin family. The loop containing the signature motif WAxxC is partially disordered, indicating a greater degree of flexibility in this region compared with classical dithiol thioredoxins with a WCGPC active-site motif.

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Multijet Cross Sections In Charged Current E±P Scattering At Hera, S. Chekanov, M. Derrick, S. Magill, B. Musgrave, D. Nicholass, J. Repond, R. Yoshida, Margarita C. K. Mattingly, M. Jechow, N. Pavel, P. Antonioli, G. Bari, L. Bellagamba, D. Boscherini, A. Bruni, G. Bruni, F. Cindolo, M. Corradi, G. Iacobucci, A. Margotti, R. Nania, A. Polini, S. Antonelli, M. Basile, M. Bindi, L. Cifarelli, A. Contin, S. De Pasquale, G. Sartorelli, A. Zichichi, D. Bartsch Aug 2008

Multijet Cross Sections In Charged Current E±P Scattering At Hera, S. Chekanov, M. Derrick, S. Magill, B. Musgrave, D. Nicholass, J. Repond, R. Yoshida, Margarita C. K. Mattingly, M. Jechow, N. Pavel, P. Antonioli, G. Bari, L. Bellagamba, D. Boscherini, A. Bruni, G. Bruni, F. Cindolo, M. Corradi, G. Iacobucci, A. Margotti, R. Nania, A. Polini, S. Antonelli, M. Basile, M. Bindi, L. Cifarelli, A. Contin, S. De Pasquale, G. Sartorelli, A. Zichichi, D. Bartsch

Faculty Publications

Jet cross sections were measured in charged-current deep inelastic e±p scattering at high boson virtualities Q2 with the ZEUS detector at HERA II using an integrated luminosity of 0.36fb-1. Differential cross sections are presented for inclusive-jet production as functions of Q2, Bjorken x and the jet transverse energy and pseudorapidity. The dijet invariant mass cross section is also presented. Observation of three- and four-jet events in charged-current e±p processes is reported for the first time. The predictions of next-to-leading-order (NLO) QCD calculations are compared to the measurements. The measured inclusive-jet cross sections are well described in shape and normalization by …

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Search Of S3 Ligo Data For Gravitational Wave Signals From Spinning Black Hole And Neutron Star Binary Inspirals, B. Abbott, R. Abbott, R. Adhikari, J. Agresti, P. Ajith, B. Allen, R. Amin, S. B. Anderson, W. G. Anderson, M. Arain, M. Araya, H. Armandula, M. Ashley, S. Aston, P. Aufmuth, C. Aulbert, S. Babak, S. Ballmer, H. Bantilan, B. C. Barish, C. Barker, D. Barker, B. Barr, P. Barriga, M. A. Barton, K. Bayer, J. Betzwieser, P. T. Beyersdorf, B. Bhawal, I. A. Bilenko, G. Billingsley, Tiffany Z. Summerscales Aug 2008

Search Of S3 Ligo Data For Gravitational Wave Signals From Spinning Black Hole And Neutron Star Binary Inspirals, B. Abbott, R. Abbott, R. Adhikari, J. Agresti, P. Ajith, B. Allen, R. Amin, S. B. Anderson, W. G. Anderson, M. Arain, M. Araya, H. Armandula, M. Ashley, S. Aston, P. Aufmuth, C. Aulbert, S. Babak, S. Ballmer, H. Bantilan, B. C. Barish, C. Barker, D. Barker, B. Barr, P. Barriga, M. A. Barton, K. Bayer, J. Betzwieser, P. T. Beyersdorf, B. Bhawal, I. A. Bilenko, G. Billingsley, Tiffany Z. Summerscales

Faculty Publications

We report on the methods and results of the first dedicated search for gravitational waves emitted during the inspiral of compact binaries with spinning component bodies. We analyze 788 hours of data collected during the third science run (S3) of the LIGO detectors. We searched for binary systems using a detection template family specially designed to capture the effects of the spin-induced precession of the orbital plane. We present details of the techniques developed to enable this search for spin-modulated gravitational waves, highlighting the differences between this and other recent searches for binaries with nonspinning components. The template bank we …

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Effect Of Long-Range Hopping On Tc In A Two-Dimensional Hubbard-Holstein Model Of The Cuprates, Ehsan Khatami, A. Macridin, M. Jarrell Aug 2008

Effect Of Long-Range Hopping On Tc In A Two-Dimensional Hubbard-Holstein Model Of The Cuprates, Ehsan Khatami, A. Macridin, M. Jarrell

Faculty Publications

We study the effect of long-range hoppings on Tc for the two-dimensional (2D) Hubbard model with and without Holstein phonons using parameters evaluated from band-structure calculations for cuprates. Employing the dynamical cluster approximation (DCA) with a quantum Monte Carlo (QMC) cluster solver for a 4-site cluster, we observe that without phonons, the long-range hoppings, t′ and t′′, generally suppress Tc. We argue that this trend remains valid for larger clusters. In the presence of the Holstein phonons, a finite t′ enhances Tc in the under-doped region for the hole-doped system, consistent with local-density approximation (LDA) calculations and experiment. This is …

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Effective Single-Particle Order-N Scheme For The Dynamics Of Open Noninteracting Many-Body Systems, Yuriy V. Pershin Dr, Y. Dubi, M. Di Ventra Aug 2008

Effective Single-Particle Order-N Scheme For The Dynamics Of Open Noninteracting Many-Body Systems, Yuriy V. Pershin Dr, Y. Dubi, M. Di Ventra

Faculty Publications

Quantum master equations are common tools to describe the dynamics of many-body systems open to an environment. Due to the interaction with the latter, even for the case of noninteracting electrons, the computational cost to solve these equations increases exponentially with the partical number. We propose a simple scheme, which allows to study the dynamics of N noninteracting electrons taking into account both dissipation effects and Fermi statistics, with a computational cost that scales linearly with N. Our method is based on a mapping of the many-body system to a specific set of effective single-particle systems. We provide detailed …

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Watertight Trimmed Nurbs, Thomas W. Sederberg, Xin Li, Hongwei Lin, Heather Ipson Aug 2008

Watertight Trimmed Nurbs, Thomas W. Sederberg, Xin Li, Hongwei Lin, Heather Ipson

Faculty Publications

This paper addresses the long-standing problem of the unavoidable gaps that arise when expressing the intersection of two NURBS surfaces using conventional trimmed-NURBS representation. The solution converts each trimmed NURBS into an untrimmed T-Spline, and then merges the untrimmed T-Splines into a single, watertight model. The solution enables watertight fillets of NURBS models, as well as arbitrary feature curves that do not have to follow isoparameter curves. The resulting T-Spline representation can be exported without error as a collection of NURBS surfaces.

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Community Detection In Complex Networks By Dynamical Simplex Evolution, Vladimir Gudkov, V. Montealegre, S. Nussinov, Z. Nussinov Jul 2008

Community Detection In Complex Networks By Dynamical Simplex Evolution, Vladimir Gudkov, V. Montealegre, S. Nussinov, Z. Nussinov

Faculty Publications

We benchmark the dynamical simplex evolution (DSE) method with several of the currently available algorithms to detect communities in complex networks by comparing correctly identified nodes for different levels of "fuzziness" of random networks composed of well-defined communities. The potential benefits of the DSE method to detect hierarchical substructures in complex networks are discussed.

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Stimulated Brillouin Scattering Continuous Wave Phase Conjugation In Step-Index Fiber Optics, Steven M. Massey, Justin B. Spring, Timothy H. Russell Jul 2008

Stimulated Brillouin Scattering Continuous Wave Phase Conjugation In Step-Index Fiber Optics, Steven M. Massey, Justin B. Spring, Timothy H. Russell

Faculty Publications

Continuous wave (CW) stimulated Brillouin scattering (SBS) phase conjugation in step-index optical fibers was studied experimentally and modeled as a function of fiber length. A phase conjugate fidelity over 80% was measured from SBS in a 40 m fiber using a pinhole technique. Fidelity decreases with fiber length, and a fiber with a numerical aperture (NA) of 0.06 was found to generate good phase conjugation fidelity over longer lengths than a fiber with 0.13 NA. Modeling and experiment support previous work showing the maximum interaction length which yields a high fidelity phase conjugate beam is inversely proportional to the fiber …

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Scaling Ant Colony Optimization With Hierarchical Reinforcement Learning Partitioning, Erik J. Dries, Gilbert L. Peterson Jul 2008

Scaling Ant Colony Optimization With Hierarchical Reinforcement Learning Partitioning, Erik J. Dries, Gilbert L. Peterson

Faculty Publications

This paper merges hierarchical reinforcement learning (HRL) with ant colony optimization (ACO) to produce a HRL ACO algorithm capable of generating solutions for large domains. This paper describes two specific implementations of the new algorithm: the first a modification to Dietterich’s MAXQ-Q HRL algorithm, the second a hierarchical ant colony system algorithm. These implementations generate faster results, with little to no significant change in the quality of solutions for the tested problem domains. The application of ACO to the MAXQ-Q algorithm replaces the reinforcement learning, Q-learning, with the modified ant colony optimization method, Ant-Q. This algorithm, MAXQ-AntQ, converges to solutions …

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An Ultrahigh Stability, Low-Noise Laser Current Driver With Digital Control, Christopher J. Erickson, Marshall Van Zijll, Greg Doermann, Dallin S. Durfee Jul 2008

An Ultrahigh Stability, Low-Noise Laser Current Driver With Digital Control, Christopher J. Erickson, Marshall Van Zijll, Greg Doermann, Dallin S. Durfee

Faculty Publications

We present a low-noise, high modulation-bandwidth design for a laser current driver with excellent long-term stability. The driver improves upon the commonly used Hall–Libbrecht design. The current driver can be operated remotely by way of a microprocessing unit, which controls the current set point digitally. This allows precise repeatability and improved accuracy and stability. It also allows the driver to be placed near the laser for reduced noise and for lower phase lag when using the modulation input. We present the theory of operation for our driver in detail, and give a thorough characterization of its stability, noise, set-point accuracy …

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Stable Long-Time Semiclassical Description Of Zero-Point Energy In High-Dimensional Molecular Systems, Sophya Garashchuk, Vitaly A. Rassolov Jul 2008

Stable Long-Time Semiclassical Description Of Zero-Point Energy In High-Dimensional Molecular Systems, Sophya Garashchuk, Vitaly A. Rassolov

Faculty Publications

Semiclassical implementation of the quantum trajectory formalism [J. Chem. Phys. 120, 1181 (2004)] is further developed to give a stable long-time description of zero-point energy in anharmonic systems of high dimensionality. The method is based on a numerically cheap linearized quantum force approach; stabilizing terms compensating for the linearization errors are added into the time-evolution equations for the classical and nonclassical components of the momentum operator. The wave function normalization and energy are rigorously conserved. Numerical tests are performed for model systems of up to 40 degrees of freedom.

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Implications For The Origin Of Grb 070201 From Ligo Observations, B. Abbott, R. Abbott, R. Adhikari, J. Agresti, P. Ajith, B. Allen, R. Amin, S. B. Anderson, W. G. Anderson, M. Arain, M. Araya, H. Armandula, M. Ashley, S. Aston, P. Aufmuth, C. Aulbert, S. Babak, S. Ballmer, H. Bantilan, B. C. Barish, C. Barker, D. Barker, B. Barr, P. Barriga, M. A. Barton, K. Bayer, J. Betzwieser, P. T. Beyersdorf, B. Bhawal, I. A. Bilenko, G. Billingsley, Tiffany Z. Summerscales Jul 2008

Implications For The Origin Of Grb 070201 From Ligo Observations, B. Abbott, R. Abbott, R. Adhikari, J. Agresti, P. Ajith, B. Allen, R. Amin, S. B. Anderson, W. G. Anderson, M. Arain, M. Araya, H. Armandula, M. Ashley, S. Aston, P. Aufmuth, C. Aulbert, S. Babak, S. Ballmer, H. Bantilan, B. C. Barish, C. Barker, D. Barker, B. Barr, P. Barriga, M. A. Barton, K. Bayer, J. Betzwieser, P. T. Beyersdorf, B. Bhawal, I. A. Bilenko, G. Billingsley, Tiffany Z. Summerscales

Faculty Publications

We analyzed the available LIGO data coincident with GRB 070201, a short-duration, hard-spectrum γ-ray burst (GRB) whose electromagnetically determined sky position is coincident with the spiral arms of the Andromeda galaxy (M31). Possible progenitors of such short, hard GRBs include mergers of neutron stars or a neutron star and a black hole, or soft γ-ray repeater (SGR) flares. These events can be accompanied by gravitational-wave emission. No plausible gravitational-wave candidates were found within a 180 s long window around the time of GRB 070201. This result implies that a compact binary progenitor of GRB 070201, with masses in the range …

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Epigene And Hypogene Karst Manifestations Of The Castile Formation: Eddy County, New Mexico And Culberson County, Texas, Usa, Kevin W. Stafford, Raymond Nance, Laura Rosales-Lagarde, Penelope J. Boston Jul 2008

Epigene And Hypogene Karst Manifestations Of The Castile Formation: Eddy County, New Mexico And Culberson County, Texas, Usa, Kevin W. Stafford, Raymond Nance, Laura Rosales-Lagarde, Penelope J. Boston

Faculty Publications

Permian evaporites of the Castile Formation crop out over ~1,800 km2 in the western Delaware Basin (Eddy County, New Mexico and Culberson County, Texas, USA) with abundant and diverse karst manifestations. Epigene karst occurs as well-developed karren on exposed bedrock, while sinkholes dominate the erosional landscape, including both solutional and collapse forms. Sinkhole analyses suggest that more than half of all sinks are the result of upward stoping of subsurface voids, while many solutional sinks are commonly the result of overprinting of collapsed forms. Epigene caves are laterally limited with rapid aperture decreases away from insurgence, with passages developed along …

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A Review Of Fibroblast Populated Collagen Lattices, J. C. Dallon, Paul H. Ehrlich Jul 2008

A Review Of Fibroblast Populated Collagen Lattices, J. C. Dallon, Paul H. Ehrlich

Faculty Publications

Bellaes introduction of the fibroblast populated collagen lattice (FPCL) (1) has facilitated the study of collagen-cell interactions. As a result of the numerous modifications of the casting of FPCL's, the in vivo applications of these in vitro findings has been confusing. Here experimental FPCL contraction findings are viewed in regard to three proposed mechanisms responsible for lattice contraction. The cellular mechanisms responsible for generating FPCL contraction are: cell contraction, cell tractional forces related to cell locomotion, and initial cell elongation and spreading.

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