Physical Sciences and Mathematics Commons^™

A Gaussian Mixture Model For Automated Vesicle Fusion Detection And Classification, Haohan Li

Masters Theses

"Accurately detecting and classifying vesicle-plasma membrane fusion events in fluorescence microscopy, is of primary interest for studying biological activities in a close proximity to the plasma membrane. In this paper, we present a novel Gaussian mixture model for automated identification of vesicle-plasma membrane fusion and partial fusion events in total internal reflection fluorescence microscopy image sequences. Image patches of fusion event candidates are detected in individual images and linked over consecutive frames. A Gaussian mixture model is fit on each image patch of the patch sequence with outliers rejected for robust Gaussian fitting. The estimated parameters of Gaussian functions over …

Sensor Authentication In Collaborating Sensor Networks, Jake Uriah Bielefeldt

Masters Theses

"In this thesis, we address a new security problem in the realm of collaborating sensor networks. By collaborating sensor networks, we refer to the networks of sensor networks collaborating on a mission, with each sensor network is independently owned and operated by separate entities. Such networks are practical where a number of independent entities can deploy their own sensor networks in multi-national, commercial, and environmental scenarios, and some of these networks will integrate complementary functionalities for a mission. In the scenario, we address an authentication problem wherein the goal is for the Operator Oⁱ of Sensor Network S^{i …}

Argumentation Based Collaborative Software Architecture Design And Intelligent Analysis Of Software Architecture Rationale, Nagaprashanth Chanda

Masters Theses

"A growing model for software architecture defines it as a set of principle design decisions which drive system architects to design the architecture satisfying software requirements and architectural constraints. The design decision making process involves a group of stakeholders exchanging their viewpoints to address various concerns and to reach a consensus collaboratively. These architecture design decisions are usually made based on experiences since there aren't defined methods and models for architecture design. Each design decision yields a set of outcomes which impacts both the system architecture and the final product. As software product systems, tend to be large in size, …

Comprehensive Benefits Of Green Roofs, Madison R. Gibler

Masters Theses

"Green infrastructure uses vegetation, soils, and natural processes to manage water and create healthier urban environments, providing traditional roof services and alternative stormwater management technologies. Other benefits and impacts are not yet fully understood or valued. Research conducted assesses specific stormwater benefits of green roofs, providing information on nutrient leaching from media; and analyzes potential energy benefits through side-by-side comparisons of full-scale white, traditional black rubber, and green roofs in the mid-continent Missouri climate. Roofing media selection impacted leaching of nutrients, suspended solids, and organic carbon from the tested green roof media. Thermal properties were investigated at the building level, …

Generation And Validation Of Optimal Topologies For Solid Freeform Fabrication, Purnajyoti Bhaumik

Masters Theses

"The study of fabricating topologically optimized parts is presented hereafter. The mapping of topology optimization results for Standard Tessellation Language (STL) writing would enable the solid freeform fabrication of lightweight mechanisms. Aerospace leaders such as NASA, Boeing, Airbus, European Aeronautic Defense And Space Company (EADS), and GE Aero invest in topology optimization research for the production of lightweight materials. Certain concepts such as microstructural homogenization, discretization, and mapping are reviewed and presented in the context of topology optimization. Future biomedical applications of solid freeform fabrication such as organ printing stand to save millions of lives through the robust development of …

Fault Interpretation And Reservoir Characterization Of The Farewell Formation Within Kerry Field, Taranaki Basin, New Zealand, Waleed Deefallah M Alotaby

Masters Theses

"The Kerry Field, located in the southern offshore Taranaki Basin, is a large liquid-rich gas accumulation with a thin (20 m) oil rim. The field was discovered by the New Zealand Oil & Gas in 1986 (well Kupe South-1). The gas and oil are trapped within a 9.2 km² fault-dependent three-way dip closure in the Paleocene Farewell Formation reservoir. Pressure, volume, and temperature (PVT) data indicate that the gas and oil columns in the field are in equilibrium with one another and are saturated at current reservoir conditions.

The Farewell Formation is the uppermost formation of the Kapuni Group …

Seismic Structural Investigation And Reservoir Characterization Of The Moki Formation In Maar Field, Taranaki Basin, New Zealand, Mohammed Dhaifallah M Alotaibi

Masters Theses

"The Maari Field is a large oil field located in the southern part of the Taranaki Basin, New Zealand. The field is bounded by two major structures, the Eastern Mobile Belt and Western Stable Platform. The Maari Field produces 40,000 BOPD (Barrels of Oil per Day) from five wells from reservoirs in the Moki Formation. The Miocene Moki Formation was deposited as part of the Wai-iti Group and consists of sandstone interbedded with siltstone and claystone. The sandstone of the Moki Formation is characterized by a submarine fan. It is distributed along the southern and central Taranaki shelf. Three-dimensional seismic …

Aerial Vehicle Trajectory Design For Spatio-Temporal Task Satisfaction And Aggregation Based On Utility Metric, Amarender Reddy Mekala

Masters Theses

"Flight trajectories are mainly designed in order to make sure that the aerial vehicle reaches the destination point from the start point. In addition to that, the flight path is designed in such a way that the flight avoids dangerous zones and the maneuvers required for the path are practically feasible for the flight.

This thesis focuses on the aerial vehicle trajectory generation passing through a set of pre-defined way points while satisfying the task points sent by the ground base station in between the way points. Each specified waypoint is reached exactly at the specified location and time. Intermediate …

Rote-Lcs Learning Classifier System For Classification And Prediction, Benjamin Daniels

Masters Theses

"Machine Learning (ML) involves the use of computer algorithms to solve for approximate solutions to problems with large, complex search spaces. Such problems have no known solution method, and search spaces too large to allow brute force search to be feasible. Evolutionary algorithms (EA) are a subset of machine learning algorithms which simulate fundamental concepts of evolution. EAs do not guarantee a perfect solution, but rather facilitate convergence to a solution of which the accuracy depends on a given EA's learning architecture and the dynamics of the problem.

Learning classifier systems (LCS) are algorithms comprising a subset of EAs. The …

Ph Dependent Antibiotic Resistance Of An Alkaliphilic, Halotolerant Bacterium Isolated From Soap Lake, Washington, Tiffany Charlynn Edwards

Masters Theses

"Soap Lake, located in Washington State, is a meromictic, soda lake. Many bacterial isolates retrieved from Soap Lake have been noted to possess resistance to multiple antibiotics. A likely explanation for the wide range of antibacterial resistance exhibited by these strains is due to the impact of high alkalinity on the antibiotics themselves and not due to the presence of antibiotic resistance genes. The aim of our study was to determine if select antibiotics are effective against Halomonas eurialkalitoleranis, a bacterium capable of growth over a wide range of neutral to alkaline pH values, to investigate the influence of alkalinity …

Design And Implementation Of A Broker For Cloud Additive Manufacturing Services, Venkata Prashant Modekurthy

Masters Theses

"The growing number of cloud Additive Manufacturing (AM) services, offered by different providers over the Internet, makes it challenging for consumers to compare these cloud AM services to select a service of their choice. In addition, it is even more challenging for consumers to compare these cloud AM services against their personal preferences. This is because, consumers personal preferences on multiple service attributes such as price, material, accuracy, and schedule, should be considered for cloud AM service selection. The decentralized nature of these cloud AM services coupled by the need to consider consumers personal preferences during cloud AM service selection, …

A Geochemical Investigation Of Co₂ Sequestration And Site Characterization At Two Missouri Locations, Robert Allen Swain

Masters Theses

"The feasibility of sequestering CO₂ in saline aquifers of Lamotte Formation sandstone was investigated at wells located near Thomas Hill power plant, Moberly, MO and Sioux City Power Plant in Florissant, MO. Governing factors of using aquifers for CO₂ disposal include water salinity, potential for carbonic acid buffering, rate of precipitation of carbonate minerals following CO₂ introduction into the host aquifer, and the integrity of the Davis and Derby-DoeRun shale as a trap rock to prevent migration of the CO₂ phase and carbonic acid into the overlying potable Ozark Aquifer.

Both in situ and laboratory methods …

Steam Flooding Screening And Eor Prediction By Using Clustering Algorithm And Data Visualization, Na Zhang

Masters Theses

"Enhanced Oil Recovery (EOR) techniques are vitally important in the oil industry because these techniques could not only extend the life of wells, but also produce 10% to 30% additional oil from the reservoir. However, selecting the most suitable EOR techniques for unknown reservoirs is not easy for decision making. Based on literature, EOR screening criteria could help to find the best candidates for unknown projects, which is classified into two categories: conventional EOR screening and advanced EOR screening. In this research, an artificial intelligent (AI) method, hierarchical clustering algorithm, is adapted to analyze both steam flooding projects and worldwide …

Paleogeographic And Paleoenvironmental Evolution Of Lacustrine And Fluvial Upper Triassic Zhangjiatan Shale Sequence, Ordos Basin, China, Qiuwan Yu

Masters Theses

"Detailed sequence stratigraphic and depositional systems analyses can effectively delineate factors and processes controlling deposition of fine-grained lacustrine sediments. Upper Triassic Zhangjiatan (ZJT) Shale Bed and adjacent strata in Ordos foreland basin was used as an example. A new depositional sequence model shows that the maximum regressive shoreline was more landward than that at the lowest lake-level. The study area is on the ramp margin, covering 100x90 km². Thin sections, cores and well-logs of 80 wells are used to calibrate log signatures, document lithofacies, and interpret depositional facies in a sequence stratigraphic context. The entire sequence thickens from …

In Vitro Study Of Wound-Healing Capabilities Of Bioactive Glass Fibers Under Various Culture Conditions, Sisi Chen

Masters Theses

"Bioactive borate glass has been recognized to have both hard and soft tissue repair and regeneration capabilities through stimulating both osteogenesis and angiogenesis. However, the underlying physiological and cellular mechanism behind this function remains unclear. In this study, in vitro dynamic flow modules were designed to mimic the micro-environment near the vascular depletion and hyperplasia area in wound-healing regions, and were used to investigate the biocompatibility and functionality of borate glass nano-/micro-fibers. Glass-cell interactions were investigated either by dosing fibers to the upstream of or co-cultured with cells, and two types of borate glasses (with or without CuO/ZnO doped were …

Laser-Induced Breakdown Spectroscopy For Analysis Of High Density Methane-Oxygen Mixtures, Matthew Dackman

Masters Theses

The applicability of laser-induced breakdown spectroscopy (LIBS) toward greater than atmospheric density combustion diagnostics is examined. Specifically, this involves ascertaining the feasibility of measuring chemical equivalence ratios directly from atomic emission spectra at high density. The need for such measurement arises from the desire to quantify real time, localized combustion performance in weakly mixed flows. Insufficiently mixed flows generally result in unwanted byproducts, possess the propensity for overall combustion instability, and are increasingly likely to experience localized flame extinction.

We simulate methane/oxygen combustion in ambient pressures ranging 1 to 4 atmospheres, demonstrating these results to be analogous to what would …

Detecting Tropical Cyclone Signals In Tree Rings Of Longleaf Pine (Pinus Palustris Mill.), Valdosta, Georgia, U.S.A., Savannah Anne Collins

Masters Theses

The study of past hurricanes to help interpret the patterns of current and future tropical storms is vital to our economy, society, and infrastructure. Understanding how hurricanes are influenced by a warm climate is critical, and hurricane reconstructions from former periods of the Holocene (the last ~11,500 yr) will be beneficial. Paleotempestology is the study of past tropical cyclones and uses historical, biological, and geological proxies to reconstruct tropical cyclone activity to create a record of historical hurricane patterns. A tropical cyclone (TC) is a chaotic weather event that is influenced by several elements, including warm ocean waters from which …

Transport Of Fecal Pollution Indicators: Impacts From The Land Spreading Of Liquid Manure On Water Quality, Derek Lee Street

Masters Theses

This thesis is a case study to determine if groundwater and/or drainage tiles are important pathways for fecal migration to streams resulting from the application of liquid manure to cropland at a small dairy farm, the Little River Animal and Environmental Unit, near Townsend, TN. Traditional biological indicators, coliforms and E.coli, were used in conjunction with a bovine specific Bacteroides assay to measure fecal microbes. Total nitrates, turbidity, and other chemical parameters for water quality also were used to identify related fecal contamination. This thesis covers three separate manure applications. The first manure application occurred in May 2013, the …

A Remote Sensing Based Early Warning System For Algal Blooms In Kuwait Bay And Coastal Waters, Cameron Manche

Masters Theses

The Kuwait Bay and its coastal waters are being threatened by a perpetual hazard, the proliferation of harmful algal blooms (HABS). The frequency of HAB occurrences is a growing problem that is only reported subsequent to the onset of a HAB event. Little effort has been invested in investigating the spatial and temporal distribution of these events in Kuwait Bay and even less is known about their controlling factors. All previous studies within the Kuwait Bay have focused either on measuring nutrient availability and the biodiversity of algal species.

The overall study objective is four-fold: (1) to monitor the spatial …

Estimating Streambank Erosion Using Gps-Based Watershed-Scale Video Mapping And Usepa Bancs For The Development Of Sediment Tmdls, Kelsey Jo Hensley

Masters Theses

According to the United States Environmental Protection Agency (USEPA), sediment is one of the most common water pollutants in the nation’s rivers. Consequently, the identification of streambank locations with high erosion potential is important in reducing sediment input via management and monitoring practices. Furthermore, the estimation of erosion rates and sediment loads can assist in the development of Total Maximum Daily Loads (TMDLs). The objective of this study was to integrate two USEPA-recommended approaches with the Streambank Video Mapping System (SVMS) in order to predict site-specific Total Daily Sediment Loads (TDSLs) and calculate sediment TMDLs for streambank erosion over several …

Design And Model Of The Frame For Hagrid (Hybrid Array Of Gamma Ray Detectors), Santiago Munoz

Masters Theses

Transfer reactions in inverse kinematics have provided critical information in the study of exotic nuclei. However, transfer reactions with charged particles suffer from poor resolution. The measurement of gamma-rays offers several advantages: they provide not only good resolution in measurements but also other information about the nuclei like lifetimes of unstable states. The combination of these two methods would be the ideal situation to gather information about nuclear structure.

HAGRiD, which stands for The Hybrid Array of Gamma Ray Detectors, is a LaBr3(Ce) [lanthanum bromide crystal with a cerium activator] scintillation array to measure gamma rays from transfer reactions and …

Investigating The Effects Of Urbanization On Residual Forest Soils In Knox Co., Tennessee, Benjamin Lee Reichert

Masters Theses

As the process of urbanization advances across the country, so does the importance of urban forests, which include both trees and the soils in which they grow. Soil microbial biomass, which plays a critical role in nutrient transformation in urban ecosystems, is affected by factors such as soil type and the availability of water, carbon, and nitrogen. However, the microbial dynamics of urban forest soils remain largely unknown. A key mechanistic link between plant species diversity and ecosystem function is heterotrophic microbial communities that inhabit the soil and mediate principal processes that control ecosystem carbon (C) and nitrogen (N) cycling. …

Structural And Metamorphic Evolution Of The Haimanta Group: Insights From P-T-T-D Path Modeling Of Rocks Near The Leo Pargil Dome, Nw India, Kyle Vincent White

Masters Theses

The metasedimentary rocks of the Haimanta Group in the upper Sutlej Valley, NW India, record an extensive history of Himalayan deformation and metamorphism. Situated beneath the low-grade metasediments of the Tethyan Sedimentary sequence in the hanging wall of the South Tibetan detachment system (STDS), these poly-deformed rocks record Eocene–Oligocene burial metamorphism, crustal thickening and shortening, decompression and mid-crustal melting in the early Miocene, and exhumation along extensional shear zones related to the orogen-parallel exhumation of the Leo Pargil dome (LPD). Low-pressure assemblages (cordierite + sillimanite + quartz) overgrow Barrovian porphyroblasts in Haimanta Group rocks in the NE portion of Sutlej …

Metamorphic Evolution Of Eastern Blue Ridge Calc-Silicates In Southwestern North Carolina, Northeastern Georgia, And Northwestern South Carolina, Gina Brianne Smith

Masters Theses

Calc-silicate rocks in the eastern Blue Ridge of SW North Carolina, NE Georgia, and NW South Carolina are products of contact and regional metamorphism. Two types of calc-silicates occur in this area: Type A rocks occur as contact metamorphosed xenoliths in the ~336 Ma Rabun Granodiorite batholith, and Type B rocks occur as mappable thin, elongate, ribbon-like units in the Tallulah Falls Formation east of the Rabun batholith. Petrographic and geochemical data confirm similar composition for both types and mineral assemblages that includes amphibole, garnet, epidote, diopside, quartz, and plagioclase with accessory zircon, sphene, and opaque minerals. Calcite, however, is …

Comparison Of Triangle And Tetrad Discrimination Methodology In Applied, Industrial Manner, Sara Lyn Carlisle

Masters Theses

The triangle method has been widely used in the food industry for many years when conducting sensory discrimination testing. Recently, however, another discrimination testing method, the tetrad, has begun to gain popularity. Based on currently published research, the tetrad method possesses statistical advantages over the triangle and would require fewer panelists, reduce testing time, and use less sample material. More testing is needed to confirm these advantages in an applied, industrial approach on a wider range of products. Over thirty triangles and thirty tetrads with untrained panelists have been completed in order to compare the two methods. Products tested ranged …

Thick Target Yield Of Th-229 Via Low Energy Proton Bombardment Of Th-232, Justin Reed Griswold

Masters Theses

Actinium-225 is one of the more effective radioisotopes used in alpha radioimmunotherapy. Due to its ten-day half-life, it is more efficient to create its precursor, ²²⁹Th [Thorium-229] (t_1/2[half-life] = 7932 ± 55 years). In this work, ²²⁹Th was produced via 40 MeV [Mega electron Volts] proton bombardment of a thick ²³²Th [Thorium-232] target. The irradiation took place at the Holifield Radioactive Ion Beam Facility (HRIBF) at Oak Ridge National Lab (ORNL). The target, consisting of 23 stacked natural thorium foils (137 mg/cm² [milligrams per square centimeter] each), was irradiated with 50 nA [nanoamps] of …

The Isotope Effect On Proton Conduction And Glass Transition In Phosphoric Acid, Maximilian Ferdinand Heres

Masters Theses

Hydrogen fuel cells combine hydrogen and oxygen to create water and electricity. Polymer electrolyte membranes (PEM) make up barriers within the fuel cell allowing only protons to pass through, while keeping other components separate. Many PEM contain phosphoric acid (PA) as a building block due to its excellent proton conducting properties. Improved ionic conductivity in PEM can lead to the development of better, more efficient fuel cells.

While ionic conductivity in PA at high temperatures is extensively characterized, the low temperature dynamics are not so well explored. Below the glass transition, molecular motion is frozen and proton motion is forced …

Statistical Mechanics And Schramm-Loewner Evolution With Applications To Crack Propagation Processes, Christopher Borut Mesic

Masters Theses

Schramm-Loewner Evolution (SLE) has both mathematical and physical roots that extend as far back as the early 20th century. We present the progression of these humble roots from the Ideal Gas Law, all the way to the renormalization group and conformal field theory, to better understand the impact SLE has had on modern statistical mechanics. We then explore the potential application of the percolation exploration process to crack propagation processes, illustrating the interplay between mathematics and physics.

Modeling Celiac Disease, Jillian M. Trask

Masters Theses

Those who suffer from Celiac Disease have an autoimmune response to the protein complex gluten. The goal of this work is to better understand the biological mechanisms in Celiac Disease through modeling with a system of ordinary differential equations. We first develop a model for the way in which gluten induces a response in zonulin in those with Celiac Disease and estimate parameters for such a model using limited data. We then extend this model to include the interactions between zonulin and the permeability of the intestine, and the effect of this interaction on the immune response. Finally, we perform …

Radiation-Induced Radicals In Polyurea-Crosslinked Silica Aerogel, Benjamin Michael Walters

Masters Theses

Free radicals are atoms or molecules with an odd number of electrons in an outer shell. Since electrons typically occur in pairs, this leaves one electron that is unpaired. In seek of another electron to pair with, free radicals react with and steal electrons from neighboring molecules, which then become free radicals themselves. This can start a chain reaction, cascading into large scale damage.

Ionizing radiation can tear through molecules, just as bullets can tear through things that we see. If free radicals can be detected, and seen to increase in a material upon radiation exposure, this can indicate molecular …