Physical Sciences and Mathematics Commons^™

Phenoimage: An Open-Source Graphical User Interface For Plant Image Analysis, Feiyu Zhu, Manny Saluja, Jaspinder Singh, Puneet Paul, Scott E. Sattler, Paul Staswick, Harkamal Walia, Hongfeng Yu

School of Computing: Faculty Publications

High-throughput genotyping coupled with molecular breeding approaches have dramatically accelerated crop improvement programs. More recently, improved plant phenotyping methods have led to a shift from manual measurements to automated platforms with increased scalability and resolution. Considerable effort has also gone into developing large-scale downstream processing of the imaging datasets derived from high-throughput phenotyping (HTP) platforms. However, most available tools require some programming skills.We developed PhenoImage, an open-source graphical user interface (GUI) based cross-platform solution for HTP image processing intending to make image analysis accessible to users with either little or no programming skills. The open-source nature provides the possibility …

Discrete Mathematical Structures, Tugce Ozdemir

Open Educational Resources

No abstract provided.

Computing Ribbon Obstructions For Colored Knots, Patricia Cahn, Alexandra Kjuchukova

Mathematics Sciences: Faculty Publications

Kjuchukova's p invariant gives a ribbon obstruction for Fox p-colored knots. The invariant is derived from dihedral branched covers of 4-manifolds, and can be used to calculate the signatures of these covers when singularities on the branching sets are present. In this note, we give an algorithm for evaluating p from a colored knot diagram, and compute a couple of examples.

Modeling Rna:Dna Hybrids With Formal Grammars, Natas̆A Jonoska, Nida Obatake, Svetlana Poznanović, Candice Price, Manda Riehl, Mariel Vazquez

Mathematics Sciences: Faculty Publications

R-loops are nucleic acid structures consisting of a DNA:RNA hybrid and a DNA single strand. They form naturally during transcription when the nascent RNA hybridizes to the template DNA, forcing the coding DNA strand to wrap around the RNA:DNA duplex. Although formation of R-loops can have deleterious effects on genome integrity, there is evidence of their role as potential regulators of gene expression and DNA repair. Here we initiate an abstract model based on formal grammars to describe RNA:DNA interactions and the formation of R-loops. Separately we use a sliding window approach that accounts for properties of the DNA nucleotide …

Regularity For A Class Of Quasilinear Degenerate Parabolic Equations In The Heisenberg Group, Luca Capogna, Giovanna Citti, Nicola Garofalo

Mathematics Sciences: Faculty Publications

We extend to the parabolic setting some of the ideas originated with Xiao Zhong's proof in [31] of the Hölder regularity of p-harmonic functions in the Heisenberg group Hn. Given a number p ≥ 2, in this paper we establish the C1 smoothness of weak solutions of a class of quasilinear PDE in Hn modeled on the equation.

Maternal Proximity To Mountaintop Removal Mining And Birth Defects In Appalachian Kentucky, 1997-2003, Daniel B. Cooper

Theses and Dissertations--Public Health (M.P.H. & Dr.P.H.)

Background: Extraction of coal through mountaintop removal mining (MTR) alters many dimensions of the landscape, and explosive blasts, exposed rock, and coal washing have the potential to pollute air and water with substances known to increase risk of developmental and birth anomalies. Previous research suggests that infants born to mothers living in MTR coal mining counties have higher prevalence of most types of birth defects.

Objectives: This study seeks to examine further the relationship between MTR activity and birth defects by employing individual level exposure estimation through precise satellite data of MTR activity in the Appalachian region and maternal residence …

A Karst Feature Prediction Model For Prince Of Wales Island, Alaska Based On High Resolution Lidar Imagery, Alexander Lyles

Master's Theses

Investigation into surface karst formation is significant to hazard prediction, hydrogeologic drainage, and land management. Southeast Alaska contains over 600,000 acres of mapped carbonate bedrock, and some of the fastest recorded karst dissolution in the world. The objectives of this study are to develop and compare multiple semi-automated models to map and delineate karst features from bare-earth LiDAR imagery using ArcGIS Desktop 10.7, and to apply a preliminary geostatistical analysis of sinkhole morphometric parameters to highlight potential spatial patterns of karst evolution on Prince of Wales Island, Alaska. A semi-automated approach of mapping karst features provides a dataset that minimizes …

An Investigation Into Historical And Contemporary Breeding Occurrence Of The Ferruginous Hawk In Kansas, Erica Clark

Master's Theses

The Ferruginous Hawk (Buteo regalis) is the largest Buteo species occurring in grasslands, nesting along bluffs, buttes and isolated trees. In Kansas, the Ferruginous Hawk is listed as a Species of Greatest Conservation Need, Tier II. A previous study on Ferruginous Hawks nesting in Kansas during the years of 1979 to 1987, with sporadic visits from the 1990s to 2000, revealed that the most productive nesting territories were inaccessible to predators, placed on rocky ledges and the surrounding landscape was over 50% rangeland. I revisited 82 of the 111 historic nest territories in the summers of 2019 and …

Policy Analysis Of Emissions Cap And Trade: The United State And The European Union, Drew Bealby

Master's Theses

Effects of climate change are appearing each day therefore proactive steps need to be made to reduce these effects. The National Aeronautics and Space Administration (NASA) notes that humans producing greenhouse gases (GHGs) such as carbon dioxide (CO₂), methane, and nitrous oxide are the main reason the Earth’s overall temperature is rising (NASA 2019). A policy analysis was done on the European Union Emissions Trading Scheme (EU ETS) along with comparisons to the United States’ emissions policies that are in place currently. The European Union (E.U.) itself is both an economic and political union of 27 countries in …

Ecological Controls On The Campanian Distribution Of Hesperornis (Aves: Hesperornithiformes) In The Western Interior Seaway, Blake Chapman

Master's Theses

The epicontinental Western Interior Seaway (WIS) of Late Cretaceous North America provided a unique marine habitat for cephalopods, fish, marine reptiles, and the foot-propelled diving seabird Hesperornis. While several predator-prey relationships among Hesperornis or other hesperornithiforms and other WIS animals have been hypothesized based on gut contents, bite marks, and coprolites/colonites, ecological relationships have not been quantitatively tested. Paleontological species distribution modeling (SDM) studies have focused on extinct non-marine taxa and marine invertebrates, with only two marine vertebrate studies of extant taxa. Here, two SDM methods were used to test the influence of vertebrate faunas, sedimentary rock type, paleogeography, …

Revegetating Salt-Impacted Soils In The Northern Great Plains, Abigail P. Blanchard

Electronic Theses and Dissertations

In the northern Great Plains (NGP), an estimated 10.6 million hectares of land are affected by naturally occurring salt-impacted soil. Naturally occurring salt impaction results when rainfall causes salts in parent material to move upward through the soil profile and remain in the root zone causing osmotic and ionic stress, negatively affecting seed imbibition, germination, and plant growth. Common methods to remediate saltimpacted soils were developed in the irrigated soils of the Southwestern U.S., are ineffective in the non-irrigated soils of the NGP, and can exacerbate the problem. Therefore, new methods to remediate salt-impacted soil in the NGP are needed. …

Integrating The First Person View And The Third Person View Using A Connected Vr-Mr System For Pilot Training, Chang-Geun Oh, Kwanghee Lee, Myunghoon Oh

Journal of Aviation/Aerospace Education & Research

Virtual reality (VR)-based flight simulator provides pilots the enhanced reality from the first-person view. Mixed reality (MR) technology generates effective 3D graphics. The users who wear the MR headset can walk around the 3D graphics to see all its 360 degrees of vertical and horizontal aspects maintaining the consciousness of real space. A VR flight simulator and an MR application were connected to create the capability of both first-person view and third-person view for a comprehensive pilot training system. This system provided users the capability to monitor the aircraft progress along the planned path from the third-person view as well …

In Vitro Screening Of Tp5801 Against Kinases For Nature Communications Publication, Joshua Andersen

ScholarsArchive Data

Data from screen of TP-5801 against in vitro kinases

Kinase Screen Data For Nature Communications Publication, Joshua Andersen

ScholarsArchive Data

A TNK1 peptide encompassing S502 was screened against 245 Ser/Thr kinases. This file contains kinase activity values (against S502) from an n=1 experiment. These data support a manuscript to be published in Nature Communications (Chan and Egbert et al.)

Administrative Law In The Automated State, Cary Coglianese

All Faculty Scholarship

In the future, administrative agencies will rely increasingly on digital automation powered by machine learning algorithms. Can U.S. administrative law accommodate such a future? Not only might a highly automated state readily meet longstanding administrative law principles, but the responsible use of machine learning algorithms might perform even better than the status quo in terms of fulfilling administrative law’s core values of expert decision-making and democratic accountability. Algorithmic governance clearly promises more accurate, data-driven decisions. Moreover, due to their mathematical properties, algorithms might well prove to be more faithful agents of democratic institutions. Yet even if an automated state were …

A Novel Palladium Bodipy Photocatalyst For Sonogashira Carbon-Carbon Cross-Coupling, Prahadeesh Nagaretnam

Masters Theses

No abstract provided.

Bayesian Experimental Design For Bayesian Hierarchical Models With Differential Equations For Ecological Applications, Rebecca Atanga

Theses and Dissertations

Ecologists are interested in the composition of species in various ecosystems. Studying population dynamics can assist environmental managers in making better decisions for the environment. Traditionally, the sampling of species has been recorded on a regular time frequency. However, sampling can be an expensive process due to financial and physical constraints. In some cases the environments are threatening, and ecologists prefer to limit their time collecting data in the field. Rather than convenience sampling, a statistical approach is introduced to improve data collection methods for ecologists by studying the dynamics associated with populations of interest. Population models including the logistic …

Single Molecule Investigations Of Holliday Junction Binding Protein Ruva, Dalton Reed Gibbs

Theses and Dissertations

DNA breaks are inevitable as they mainly occur due to cells’ own reactive oxygen species (ROS). While DNA breaks can be single-stranded or double-stranded, the double-stranded DNA (dsDNA) breaks are more dangerous. If such damage is not repaired, it can lead to genetic instability and serious health issues including cancers. One way dsDNA breaks can be repaired is via a process called homologous recombination (HR), which involves several DNA-binding proteins. Therefore, to have a better insight into the repair mechanism and origin of repair defects, we need a better understanding of how these proteins interact with DNA itself and DNA …

The Rational Synthesis Of Lanthanum Manganite Nanomaterials For Magnetic Refrigeration Applications, Caitlin Hunt

Theses and Dissertations

Refrigeration systems for the cooling of commercial and residential buildings are a major drain on energy resources and source of greenhouse gas emissions. Magnetic refrigeration, which employs the magnetocaloric effect, has the potential to mitigate the energy drain and greenhouse gas emissions for air conditioning. In order to commercialize magnetic refrigerators, a material with a high magnetic entropy change, ΔS, near room temperature which is simple and inexpensive to create is needed.¹ Current options for this solid refrigerant are either expensive, difficult to synthesize, or have a ΔS or T_c (the Curie Temperature, where ΔS is maximized) below …

Information Architecture For A Chemical Modeling Knowledge Graph, Adam R. Luxon

Theses and Dissertations

Machine learning models for chemical property predictions are high dimension design challenges spanning multiple disciplines. Free and open-source software libraries have streamlined the model implementation process, but the design complexity remains. In order better navigate and understand the machine learning design space, model information needs to be organized and contextualized. In this work, instances of chemical property models and their associated parameters were stored in a Neo4j property graph database. Machine learning model instances were created with permutations of dataset, learning algorithm, molecular featurization, data scaling, data splitting, hyperparameters, and hyperparameter optimization techniques. The resulting graph contains over 83,000 nodes …

Bisphosohoglycertae Mutase: A Potential Target For Sickle Cell Disease, Anfal S. Aljahdali

Theses and Dissertations

Bisphosphoglycerate mutase (BPGM) is a part of the erythrocyte glycolysis system. Specifically, it is a central enzyme in the Rapoport-Leubering pathway, a side glycolytic pathway involved in the regulation of the concentration of the natural allosteric effector of hemoglobin (Hb), 2,3-bisphosphoglycerate (2,3-BPG). BPGM catalyses the synthesis and hydrolysis of 2,3-BPG through its synthase and phosphatase activities. The synthase activity is the main role of BPGM, while the phosphatase activity is low and is activated by the physiological effector, 2-phosphoglycolate (2-PG) with the latter mechanism poorly understood.

BPGM activity and 2,3-BPG levels in red blood cells (RBCs) have a significant role …

Stellar Classification Of Folded Spectra Using The Mk Classification Scheme And Convolutional Neural Networks, John Magee

Dissertations

The year 1943 saw the introduction of the Morgan-Keenan (MK) classification scheme and this replaced the existing Harvard Classification scheme. Both stellar classification scheme are fundamentally grounded in the field of spectroscopy. The Harvard Classification scheme classified stars based on stellar surface temperature. The MK Classification scheme introduced the concept of a luminosity class that is intrinsically linked to the surface gravity of a star. Temperature and luminosity class values are estimated directly from the stellar spectrum.

Machine learning is a well-established technique in astronomy. Traditionally, a spectrum is treated as a one-dimensional sequence of data. Techniques such as artificial …

Event-Driven Servers Using Asynchronous, Non-Blocking Network I/O: Performance Evaluation Of Kqueue And Epoll, Lorcan Leonard

Dissertations

This research project evaluates the performance of kqueue and epoll in the context of event-driven servers. The evaluation is done through benchmarking and tracing which are used to measure throughput and execution time respectively. The experiment is repeated for both a virtualised and native server environment. The results from the experiment are statistically analysed and compared. These results show significant differences between kqueue and epoll, and a profound impact of virtualisation as a variable.

Novel Nonparametric Testing Approaches For Multivariate Growth Curve Data: Finite-Sample, Resampling And Rank-Based Methods, Ting Zeng

Theses and Dissertations--Statistics

Multivariate growth curve data naturally arise in various fields, for example, biomedical science, public health, agriculture, social science and so on. For data of this type, the classical approach is to conduct multivariate analysis of variance (MANOVA) based on Wilks' Lambda and other multivariate statistics, which require the assumptions of multivariate normality and homogeneity of within-cell covariance matrices. However, data being analyzed nowadays show marked departure from multivariate normal distribution and homoscedasticity. In this dissertation, we investigate nonparametric testing approaches for multivariate growth curve data from three aspects, i.e., finite-sample, resampling and rank-based methods.

The first project proposes an approximate …

Assessing And Forecasting Chlorophyll Abundances In Minnesota Lake Using Remote Sensing And Statistical Approaches, Ben Von Korff

All Graduate Theses, Dissertations, and Other Capstone Projects

Harmful algae blooms (HABs) can negatively impact water quality, lake aesthetics, and can harm human and animal health. However, monitoring for HABs is rare in Minnesota. Detecting blooms which can vary spatially and may only be present briefly is challenging, so expanding monitoring in Minnesota would require the use of new and cost efficient technologies. Unmanned aerial vehicles (UAVs) were used for bloom mapping using RGB and near-infrared imagery. Real time monitoring was conducted in Bass Lake, in Faribault County, MN using trail cameras. Time series forecasting was conducted with high frequency chlorophyll-a data from a water quality sonde. Normalized …

A Methodology For Detecting Credit Card Fraud, Kayode Ayorinde

All Graduate Theses, Dissertations, and Other Capstone Projects

Fraud detection has appertained to many industries such as banking, retails, financial services, healthcare, etc. As we know, fraud detection is a set of campaigns undertaken to avert the acquisition of illegal means to obtain money or property under false pretense. With an unlimited and growing number of ways fraudsters commit fraud crimes, detecting online fraud was so tricky to achieve. This research work aims to examine feasible ways to identify credit card fraudulent activities that negatively impact financial institutes. In the United States, an average of U.S consumers lost a median of $429 from credit card fraud in 2017, …

A Review Of The Fractal Market Hypothesis For Trading And Market Price Prediction, Jonathan Blackledge, Marc Lamphiere

Articles

This paper provides a review of the Fractal Market Hypothesis (FMH) focusing on financial times series analysis. In order to put the FMH into a broader perspective, the Random Walk and Efficient Market Hypotheses are considered together with the basic principles of fractal geometry. After exploring the historical developments associated with different financial hypotheses, an overview of the basic mathematical modelling is provided. The principal goal of this paper is to consider the intrinsic scaling properties that are characteristic for each hypothesis. In regard to the FMH, it is explained why a financial time series can be taken to be …

Finite Different Time-Domain Simulation Of Terahertz Waves Propagation Through Unmagnetized Plasma, Aditha Srikantha Senarath

Browse all Theses and Dissertations

In order to support ongoing terahertz time-domain spectroscopic experiments involving plasma characterization, it is beneficial to simulate the interaction of THz pulses with varying plasma configurations. In this approach, a 1-D Finite Difference Time Domain (FDTD) model was constructed to simulate the interaction of terahertz radiation with a plasma medium. In order to incorporate the plasma properties into the simulation, a Z-transformation was applied. This model is capable of simulating the following properties of plasmas including electron density, collision frequency, and the interaction length of the plasma medium. The simulated model was characterized using terahertz time-domain spectroscopy. The effects of …

Investigation Into The Source Of Contamination Of Surface Waters Flowing Through The Wright State University Woods, Nnadozie Kennedy Okeke

Browse all Theses and Dissertations

This investigative research was carried out with the purpose of determining the source of contaminants present in the surface waters flowing through the Wright State University woods. Five sample sites going from upstream to downstream namely; Inflow to Nutter Center Pond (INNCP), Nutter Center Pond (NCP), Outfall 21 (OTF 21), Burley, and Outfall 15 (OTF 15), were sampled over a time period spanning from June 2020 to January 2021. Samples collected were analyzed for Escherichia coli (E. coli) using 3M™ Petrifilm™ E. coli/Coliform Count (EC) plates, select anions (Phosphate PO43-, Nitrate NO3-, Sulfate SO42-, Fluoride F- and Chloride Cl-) using …

Edge Processing Of Image For Uas Sense And Avoidance, Christopher J. Rave

Browse all Theses and Dissertations

Today there is a large market for Unmanned Aerial Systems. Although most current systems are remotely piloted by operators on the ground, increasingly, many of these systems will use some sort of automatic flight controller to help mitigate new challenges, due to their deployment at growing scale. These challenges include, but are not limited to, shortage of FAA-certified UAS pilots, transmission bandwidth and delay constraints and cyber security threats associated with wireless networking, profitability of operations constrained by energy capacity and efficiency and air dynamics planning, and etc. In order to address these rising challenges, this thesis is a part …