Physical Sciences and Mathematics Commons^™

Strategies For Enhanced Genetic Analysis Of Trace Dna From Touch Dna Evidence And Household Dust, Katherine Farash

Electronic Theses and Dissertations

In forensic casework it is often necessary to obtain genetic profiles from crime scene samples that contain increasingly smaller amounts of genetic material, called Low Template DNA (LTDNA). Two examples of LTDNA sources are touch DNA evidence and dust bunnies. Touch DNA refers to DNA that is left behind through casual contact of a donor with an object or another person. Touch DNA can be used to prove a suspect was present at a crime scene. Dust bunnies, or dust conglomerates, typically contain trapped shed skin cells of anyone in the vicinity along with fibers, dirt, hair, and other trace …

Investigating New Guaiazulenes And Diketopyrropyrroles For Photonic Applications, Ebrahim Ghazvini Zadeh

Electronic Theses and Dissertations

?-Conjugated systems have been the focus of study in recent years in order to understand their charge transport and optical properties for use in organic electronic devices, fluorescence bioimaging, sensors, and 3D optical data storage (ODS), among others. As a result, several molecular building blocks have been designed, allowing new frontiers to be realized. While various successful building blocks have been fine-tuned at both the electronic and molecular structure level to provide advanced photophysical and optoelectronic characteristics, the azulene framework has been under-appreciated despite its unique electronic and optical properties. Among several attributes, azulenes are vibrant blue naturally occurring hydrocarbons …

Nanoelectronic Devices Using Carbon Nanotubes And Graphene Electrodes: Fabrication And Electronic Transport Investigations, Narae Kang

Electronic Theses and Dissertations

Fabrication of high-performance electronic devices using the novel semiconductors is essential for developing future electronics which can be applicable in large-area, flexible and transparent displays, sensors and solar cells. One of the major bottlenecks in the fabrication of high-performance devices is a large interfacial barrier formation at metal/semiconductor interface originated from Schottky barrier and interfacial dipole barrier which causes inefficient charge injection at the interface. Therefore, having a favorable contact at electrode/semiconductor is highly desirable for high-performance devices fabrication. In this dissertation, the fabrication of nanoelectronic devices and investigation of their transport properties using carbon nanotubes (CNTs) and graphene as …

Institute For Sustainable Solutions Annual Report (2013-2014), Portland State University. Institute For Sustainable Solutions

Institute for Sustainable Solutions Publications and Presentations

This brief annual report from Portland State University's Institute for Sustainable Solutions captures the highlights from the year and signals where sustainability at PSU is headed in the years to come.

Dispersion Modeling Of Nitrogen Dioxide (No2) And Fine Particulate Matter (Pm2.5) From Backup Generators At Data Centers In Prineville, Oregon, Brooke E. Harmon

Civil and Environmental Engineering Master's Project Reports

As our society becomes increasingly dependent on digital communication (e.g., social media and email) and computerized storage (e.g., digitized medical records and government documents), tech giants such as Google, Facebook, and Apple are constructing and managing an increasing number of massive Internet data centers. These data centers house a network’s most critical systems and are vital to the continuity of daily operations. Requiring as much electricity as a medium size city, data centers rely on complex auxiliary power systems to prevent disruption to service. These backup systems consist of tens of multi-megawatt diesel-powered generators that release combustion byproducts, including over …

Ecohydraulic Investigation Of Diatoms In A Bedrock-Controlled Stream, Alex M. Rittle

Theses and Dissertations--Geography

Recent studies within the past decade or so have shown the importance of algae in geomorphic and hydrologic processes of lotic systems. However, the ecohydraulic role of algae in bedrock systems has largely been ignored. In addition, the utility of algae as indicators of channel dynamics have often been assumed by geomorphologists, but relatively few studies have examined this relationship. The purpose of this study was to determine whether algae, specifically diatoms, are useful indicators of channel geomorphological dynamics, and to examine if distinct habitats or biotopes typical in fluviokarst and bedrock systems provide unique habitat space for diatoms, and …

The Characteristic Imset Polytope Of Bayesian Networks With Ordered Nodes, Jing Xi, Ruriko Yoshida

Statistics Faculty Publications

In 2010, M. Studený, R. Hemmecke, and S. Lindner explored a new algebraic description of graphical models, called characteristic imsets. Compared with standard imsets, characteristic imsets have several advantages: they are still unique vector representatives of conditional independence structures, 0-1 vectors, and more intuitive in terms of graphs than standard imsets. After defining a characteristic imset polytope (cim-polytope) as the convex hull of all characteristic imsets with a given set of nodes, they also showed that a model selection in graphical models, which maximizes a quality criterion, can be converted into a linear programming problem over the cim-polytope. However, in …

Multi-Term Linear Fractional Nabla Difference Equations With Constant Coefficients, Paul W. Eloe, Zi Ouyang

Mathematics Faculty Publications

We shall consider a linear fractional nabla (backward) fractional difference equation of Riemann–Liouville type with constant coefficients. We apply a transform method to construct solutions. Sufficient conditions in terms of the coefficients are given so that the solutions are absolutely convergent. The method is known for two-term fractional difference equations; the method is new for fractional equations with three or more terms. As a corollary, we exhibit new summation representations of a discrete exponential function, at, t = 0; 1; : : : .

Kibble-Zurek Scaling In Holographic Quantum Quench: Backreaction, Sumit R. Das, Takeshi Morita

Physics and Astronomy Faculty Publications

We study gauge and gravity backreaction in a holographic model of quantum quench across a superfluid critical transition. The model involves a complex scalar field coupled to a gauge and gravity field in the bulk. In earlier work (arXiv:1211.7076) the scalar field had a strong self-coupling, in which case the backreaction on both the metric and the gauge field can be ignored. In this approximation, it was shown that when a time dependent source for the order parameter drives the system across the critical point at a rate slow compared to the initial gap, the dynamics in the critical region …

Sobriety In Delta Not Sober, Joe Mashburn

Mathematics Faculty Publications

We will show that the space delta not sober defined by Coecke and Martin is sober in the Scott topology, but not in the weakly way below topology.

Qualitative Theory Of Functional Differential And Integral Equations, Muhammad Islam, Cemil Tunc, Mouffak Benchohra, Bingwen Lui, Samir H. Saker

Mathematics Faculty Publications

Functional differential equations arise in many areas of science and technology: whenever a deterministic relationship involving some varying quantities and their rates of change in space and/or time (expressed as derivatives or differences) is known or postulated. This is illustrated in classical mechanics, where the motion of a body is described by its position and velocity as the time varies. In some cases, this differential equation (called an equation of motion) may be solved explicitly. In fact, differential equations play an important role in modelling virtually every physical, technical, biological, ecological, and epidemiological process, from celestial motion, to bridge design, …

Statistics Notes, Saverio Perugini

Computer Science Working Papers

A collection of terms, definitions, formulas and explanations about statistics.

Metalogic Notes, Saverio Perugini

Computer Science Working Papers

A collection of notes, formulas, theorems, postulates and terminology in symbolic logic, syntactic notions, semantic notions, linkages between syntax and semantics, soundness and completeness, quantified logic, first-order theories, Goedel's First Incompleteness Theorem and more.

A Collaborative Adaptive Wiener Filter For Multi-Frame Super-Resolution, Khaled M. Mohamed, Russell C. Hardie

Electrical and Computer Engineering Faculty Publications

Factors that can limit the effective resolution of an imaging system may include aliasing from under-sampling, blur from the optics and external factors, and sensor noise. Image restoration and super-resolution (SR) techniques can be used to improve image resolution. One SR method, developed recently, is the adaptive Wiener filter (AWF) SR algorithm. This is a multi-frame SR method that combines registered temporal frames through a joint nonuniform interpolation and restoration process to provide a high-resolution image estimate. Variations of this method have been demonstrated to be effective for multi-frame SR, as well demosaicing RGB and polarimetric imagery. While the AWF …

Impact Of Detector-Element Active-Area Shape And Fill Factor On Image Sampling, Restoration, And Super-Resolution, Russell C. Hardie, Douglas R. Droege, Alexander J. Dapore, Mark E. Greiner

Electrical and Computer Engineering Faculty Publications

In many undersampled imaging systems, spatial integration from the individual detector elements is the dominant component of the system point spread function (PSF). Conventional focal plane arrays (FPAs) utilize square detector elements with a nearly 100% fill factor, where fill factor is defined as the fraction of the detector element area that is active in light detection. A large fill factor is generally considered to be desirable because more photons are collected for a given pitch, and this leads to a higher signal-to-noise-ratio (SNR). However, the large active area works against super-resolution (SR) image restoration by acting as an additional …

Katian Gssp And Carbonates Of The Simpson And Arbuckle Groups In Oklahoma, Jesse R. Carlucci, Daniel Goldman, Carlton E. Brett, Stephen R. Westrop, Stephen A. Leslie

Geology Faculty Publications

This guidebook was written for the 2015 International Symposium on the Ordovician System (ISOS) as a synopsis of the recent work (e.g., Goldman et al. 2007; Carlucci et al. 2014, forthcoming work for the ISOS meeting) on Ordovician-Silurian rocks of south-central and south-eastern Oklahoma. This new research and past studies (e.g., Harris 1957; Longman 1976; Longman 1982a, b; Fay et al. 1982a; Fay et al. 1982b) underscore the scientific importance of this region. The global stratotype section and point for the Katian Stage of the Upper Ordovician Series is examined on this trip. The first appearances of important graptolites, conodonts …

Geologic Map Of The Welcome Quadrangle And An Adjacent Part Of The Wells Quadrangle, Elko County, Nevada, Allen J. Mcgrew, Arthur W. Snoke

Geology Faculty Publications

Located in central Elko County, the Welcome and adjacent part of the Wells quadrangles expose a remarkable array of critical relationships for understanding the geologic history of the State of Nevada and the interior of the southwestern U.S. Cordillera. Covering the northern end of the East Humboldt Range and adjacent Clover Valley and Clover Hill, this map includes the northern terminus of the Ruby Mountains-East Humboldt Range metamorphic core complex. The oldest rocks in the State of Nevada (the gneiss complex of Angel Lake), and Nevada’s only exposures of Archean rock, form the core of a multikilometer scale, southward-closing recumbent …

Comparison Of The Ground-Motion Attenuation Relationship Between The Wenchuan, China, Area And The Central And Eastern United States, Jiwei Feng, Zhenming Wang, Edward W. Woolery, Shanyou Li

Report of Investigations--KGS

An M_w-7.9 earthquake occurred in Wenchuan, China, in 2008, along the Longmenshan Fault, which is located on the western border of the South China stable continental region. A detailed comparison of the Wenchuan ground-motion attenuation relationships with the relationships for the central and eastern United States (also a stable continental region) showed that the ground-motion prediction equation for the Wenchuan area is similar to those for the central and eastern United States. Thus, the strong-motion records from the Wenchuan earthquake can be used for constraining the ground-motion prediction equation and engineering analysis for the central and eastern United …

Schoenophyllum Aggregatum Zone: Stratigraphic Marker For Investigations Of Mississippian Limestones In Western Kentucky, Garland R. Dever Jr., Preston Mcgrain

Report of Investigations--KGS

Schoenophyllum aggregatum, a Mississippian colonial rugose coral, has a widespread geographic distribution and narrow stratigraphic range in the upper Ste. Genevieve Limestone of western Kentucky. This coral zone serves as a useful stratigraphic marker for commercial and geologic investigations of the extensive limestone deposits formed by the Ste. Genevieve and enclosing limestone units in the region. S. aggregatum is also present in rocks correlative with the Ste, Genevieve that occur in the Monteagle Limestone Slade Formation of south-central Kentucky and the Newman Limestone of southeastern Kentucky.

Is There Space Inside Solid Rock?, Stephen F. Greb, David C. Harris, J. Richard Bowersox

Map and Chart--KGS

No abstract provided.

Mapped Karst Groundwater Basins In The Hopkinsville 30 X 60 Minute Quadrangle, James C. Currens, Joseph A. Ray, Phillip W. O'Dell, Robert J. Blair

Map and Chart--KGS

No abstract provided.

The Unimodality Of Pure O-Sequences Of Type Two In Four Variables, Bernadette Boyle

Mathematics Faculty Publications

Since the 1970's, great interest has been taken in the study of pure O-sequences, which, due to Macaulay's theory of inverse systems, have a bijective correspondence to the Hilbert functions of Artinian level monomial algebras. Much progress has been made in classifying these according to their shape. Macaulay's theorem immediately gives us that all Artinian algebras in two variables have unimodal Hilbert functions. Furthermore, it has been shown that all Artinian level monomial algebras of type two in three variables have unimodal Hilbert functions. This paper will classify all Artinian level monomial algebras of type two in four variables into …

Optimistic And Parallel Ising Model Estimation, James Brofos, Rui Shu

Computer Science Technical Reports

We consider a new method for estimating the structure of Ising graphical models from data. We assume that the data is observed with error, so that it is, in a sense, unreliable. We propose and investigate an ``optimistic'' estimator; that is, an approach that seeks to correct the log-likelihood objective function when some amount of the data is known to be mismeasured. We derive an interior point algorithm that constructs our estimator efficiently, and demonstrate that it leads naturally to a parallel procedure for recovering the graphical structure of Ising models. We show that the optimistic estimator has performance comparable …

Quantifying The Stratigraphic Completeness Of Delta Shoreline Trajectories, Robert C. Mahon, John B. Shaw, Katherine R. Barnhart, Daniel E. J. Hobley, Brandon Mcelroy

Earth and Environmental Sciences Faculty Publications

Understanding the incomplete nature of the stratigraphic record is fundamental for interpreting stratigraphic sequences. Methods for quantifying stratigraphic completeness for one-dimensional stratigraphic columns, defined as the proportion of time intervals of some length that contain stratigraphy, are commonplace; however, quantitative assessments of completeness in higher dimensions are lacking. Here we present a metric for defining stratigraphic completeness of two-dimensional shoreline trajectories using topset-foreset rollover positions in dip-parallel sections and describe the preservation potential of a shoreline trajectory derived from the geometry of the delta surface profile and the kinematics of the geomorphic shoreline trajectory. Two end-member forward models are required …

Teaching Green Chemistry Principles To Undergraduate Students, Mariya Rozov, Tyler K. Brescia, Lyanne Valdez, Rita K. Upmacis

Faculty Papers and Publications

The environment is affected by the actions of mankind in multitudinous ways, many of which are detrimental, giving rise to pollution and toxic waste, ultimately making our planet less inhabitable. While remediation and new regulations help to prevent pollution and toxic waste, there is also a need to change the behavior of future generations of consumers and producers of new products. Future chemists and innovators are charged with the responsibility of developing new chemical processes and products that not only meet the needs of our growing population (in terms of energy, clean water and food), but also protect human health …

Looking Through The Lens Of Size: Land Use Regulations And Micro-Apartments Insan Francisco, C. J. Gabbe

Environmental Studies and Sciences

Small studio apartments, or micro-apartments, represent a market response to high housing costs in several major American cities. San Francisco, California, is one of the nation’s most expensive housing markets and the location of an innovative pilot microapartment policy. The literature on regulatory barriers to affordable housing has yet to pay much attention to minimum unit-size requirements. This article uses two prototype buildings to illustrate regulatory barriers to smaller units, including minimum parking standards in some parts of the city, outdoor open-space and indoor common-space provisions, unit-mix stipulations, and inclusionary zoning requirements. I recommend that cities review their codes through …

Uniform Convergence On A Bakhvalov-Type Mesh Using The Preconditioningapproach. Technical Report, Thái Ahn Nhan, Relja Vulanović

Mathematics and Computer Science

The linear singularly perturbed convection-diffusion problem in one dimension is considered and its discretization on a Bakhvalov-type mesh is analyzed. The preconditioning technique is used to obtain the pointwise convergence uniform in the perturbation parameter.

Santa Clara Magazine, Volume 56 Number 2, Winter 2015, Santa Clara University

Santa Clara Magazine

10 - May the Rhodes rise to meet you - On the road with Aven Satre-Meloy ’13.

16 - Season tough, photos by Denis Concordel.

18 - Space Aces by Sam Scott '96. 20 - The fragility of faith by Michael C. McCarthy, S.J. '87. A professor of religious studies and executive director of SCU’s Ignatian Center for Jesuit Education confesses that it’s not merely an academic question when he asks: “How can a thinking person still believe in God?”

26 - Rebound by Mitch Finley '73. Lessons from the court and the chapel in dealing with addiction, mental illness, …

Confocal Sputtering Of Conformal Α-Β Phase W Films On Etched Al Features, John Mark Kreikebaum, Blas Cabrera, Jeffrey J. Yen, Paul L. Brink, Matt Cherry, Astrid Tomada, Betty A. Young

Physics

The authors report on thin-film processing improvements in the fabrication of superconducting quasiparticle-trap-assisted electrothermal-feedback transition-edge sensors used in the design of cryogenic dark matter search detectors. The work was performed as part of a detector upgrade project that included optimization of a new confocal sputtering system and development of etch recipes compatible with patterning 40 nm-thick, α-β mixed-phase W films deposited on 300–600 nm-thick, patterned Al. The authors found that their standard exothermic Al wet etch recipes provided inadequate W/Al interfaces and led to poor device performance. The authors developed a modified Al wet-etch recipe that effectively mitigates geometrical step-coverage …

Association Between Respiratory Syncytial Virus Activity And Pneumococcal Disease In Infants: A Time Series Analysis Of Us Hospitalization Data., Daniel M. Weinberger, Keith P. Klugman, Claudia A. Steiner, Lone Simonsen, Cécile Viboud

Epidemiology Faculty Publications

BACKGROUND:

The importance of bacterial infections following respiratory syncytial virus (RSV) remains unclear. We evaluated whether variations in RSV epidemic timing and magnitude are associated with variations in pneumococcal disease epidemics and whether changes in pneumococcal disease following the introduction of seven-valent pneumococcal conjugate vaccine (PCV7) were associated with changes in the rate of hospitalizations coded as RSV.

METHODS AND FINDINGS:

We used data from the State Inpatient Databases (Agency for Healthcare Research and Quality), including >700,000 RSV hospitalizations and >16,000 pneumococcal pneumonia hospitalizations in 36 states (1992/1993-2008/2009). Harmonic regression was used to estimate the timing of the average seasonal …