Physical Sciences and Mathematics Commons^™

Distribution And Mixotrophy Of Cryptophyte Phytoplankton In The Northern Gulf Of Alaska, Megan O'Hara

WWU Graduate School Collection

The Northern Gulf of Alaska (NGA) is a productive subarctic marine ecosystem that supports high abundances of plankton, fishes, seabirds, and mammals. Research has shown that this high productivity is primarily controlled by seasonal and spatial heterogeneity in the lower trophic level food web. Marine cryptophytes are a crucial, yet understudied, phytoplankton group in the NGA. Cryptophytes have the capacity for mixotrophy (acquiring energy through photosynthesis and feeding) which can improve trophic transfer efficiency, increase cellular growth rates, and improve retention of nutrients in the water column. Field samples collected in spring, summer, and fall 2021 surveyed the contribution of …

Impact Of Carbonaceous And Inorganic Nanomaterial Chemistry On Polymer Additive Release From Weathered Epoxy Composites, Haley Sefi-Cyr

WWU Graduate School Collection

Nanomaterials (NMs) are small (< 100 nm), reactive, chemical species that can often be used as polymer fillers to improve mechanical strength and slow the degradation of polymer nanocomposites (PNCs). Polymers can undergo physical and chemical weathering which can result in increased release of polymer additives and non-polymerized monomers from the polymer matrix. This project aimed to study how NM chemistry and environmental weathering impacts the release and transformation of relevant PNC systems. Bisphenol A diglycidyl ether (BADGE) PNCs were synthesized containing titanium dioxide (TiO2), multi-walled carbon nanotubes (MWCNT), or graphene oxide (GO) NMs. These composites were subjected to either simulated or natural weathering conditions to quantify and characterize their capacity to leach endocrine-disrupting chemicals. Environmental variables, including temperature and ultra-violet (UV) light, were investigated for their impact on additive release. Fourier-transform infrared spectroscopy and Raman microscopy were used to characterize the PNCs which were leached in water for one to five days at 25, 45, or 65 °C. The degree of weathering also varied from no weathering, outdoor weathering, or simulated weathering using UV light. Leachates were analyzed using high-performance liquid chromatography quadrupole time-of-flight mass spectrometry to quantify release of bisphenol A (BPA), tert-butylphenol (TBP), and nonylphenol (NP). There were significant differences between NM types for PNCs weathered outdoors and leached at 25 °C for 24 h, however only TBP was detected in the leachate. When compared to the blank epoxy, GO PNCs leached significantly less in the UV and in May outdoor weathered experiments, MWCNT PNCs leached significantly less when weathered outdoors in May and June, and TiO2 PNCs leached significantly less when UV weathered. Each of the NMs has potential to decrease TBP release through sorption or photodegradation. The carbonaceous NMs (GO and MWCNT) may sorb TBP, inhibiting its release, while TiO2 may photodegrade TBP. The unweathered PNCs leached the most TBP, followed by UV weathered, and then outdoor weathered. A possible explanation for this is photodegradation of TBP by UV light in the UV- and outdoor-weathered experiments leading to removal of TBP prior to leaching. Future experiments should include additional sorption trials and long-term natural weathering with microplastic generation to further explore the release and degradation mechanisms.

The Economic And Emissions Reduction Potential Of Air Source Heat Pumps As A Replacement For Natural Gas And Electric Resistance Space Heating In The Contiguous United States, Joshua Schraer

WWU Graduate School Collection

It is widely believed that to reduce CO₂ emissions the best strategy is to electrify everything, decarbonize the grid, and improve energy efficiency. This research looks specifically at the use of air source heat pumps (AHP) as a tool to reduce the CO₂ emissions of heating energy in the residential sector. The landscape of residential energy use is complicated by a broad range of factors. We compare AHP, natural gas (NG), and electric resistance (ER) heating using data from energy prices, temperature, appliance efficiency, building efficiency and marginal emissions data from 2019 as well as modeled data of …

Modeling 21st Century Peak Flows In The Nooksack River Basin In Northwestern Washington State Using Dynamically-Downscaled Global Climate Model Projections, Evan A. Paul

WWU Graduate School Collection

The Nooksack River in northwestern Washington State provides freshwater for agriculture, municipal, and industrial use and serves as a vital habitat for endangered salmon, a resource that is of cultural and economic importance to the Nooksack Indian Tribe and the surrounding region. As more landscape becomes exposed to rain rather than snow and heavy winter precipitation events intensify (i.e., atmospheric rivers), peak flows and sediment delivery to streams will increase due to rapid runoff, resulting in salmon habitat degradation and increased flood risk. Thus, anticipating the effect of climate change on peak flows is crucial for salmon habitat restoration efforts …

Impact Of Riverbank Lupine (Lupinus Rivularis) On Grand Fir (Abies Grandis) Ectomycorrhizal Symbioses, Andrew Labay

WWU Graduate School Collection

Lupine (Lupinus rivularis) is used in the revegetation of coarse sediments surrounding the Elwha basin in Washington State due to its ability to improve soil conditions. Previous research illustrated that seeding lupine with conifers increased growth and foliar nitrogen, however, decreased ectomycorrhizal (ECM) root colonization, an important symbiosis for conifers used in restoration. We hypothesized the observed decrease in ECM may be due to lupine increasing soil nitrogen, negating the need for a fungal symbiont. To investigate this, we explored the interaction between lupine and ECM colonization of grand fir (Abies grandis) in both a field …

Activity And Selectivity Of Class B Sortase Enzymes, Sophie Jackson

WWU Graduate School Collection

Gram-positive bacteria attach many proteins to their cell walls via sortase enzymes. Sortases are cysteine transpeptidases and are grouped into 6 classes, A-F. Sortase enzymes, particularly sortase A from Staphylococcus aureus, have been used extensively for in vitro protein ligations. Here, we investigate substrate-binding in sortase A from Streptococcus pyogenes. In addition, class B sortases are typically overlooked for research and development due to low in vitro activity and incomplete knowledge of substrate specificity. Here, we investigate the activity of class B sortases from Bacillus anthracis (baSrtB), Clostridioides difficile (cdSrtB), Listeria monocytogenes (lmSrtB), and Staphylococcus aureus (saSrtB). Of these, …

Enhancing The Forensic Comparison Process Of Common Trace Materials Through The Development Of Practical And Systematic Methods, Meghan Nicole Prusinowski

Graduate Theses, Dissertations, and Problem Reports

An ongoing advancement in forensic trace evidence has driven the development of new and objective methods for comparing various materials. While many standard guides have been published for use in trace laboratories, different areas require a more comprehensive understanding of error rates and an urgent need for harmonizing methods of examination and interpretation. Two critical areas are the forensic examination of physical fits and the comparison of spectral data, which depend highly on the examiner’s judgment.

The long-term goal of this study is to advance and modernize the comparative process of physical fit examinations and spectral interpretation. This goal is …

Analytical Heat Transfer Modeling Of The Microwave Heating Process: A Focus On Carbon Black, Craig Offutt

Graduate Theses, Dissertations, and Problem Reports

Electronic waste (e-waste) has become a significant environmental issue due to the rapid advancement of technology, increasing demand for electronic devices, and shorter lifespan of electronics. One critical step in processing the e-waste involves ball milling as a means of preparing the recycling e-waste for the recovery of critical materials. Ball milling is a technique that involves the mechanical crushing and grinding of electronic waste to reduce its size and improve its reactivity during recovery. Our focused recovery technique is based on a microwave recovery technique of these critical materials from e-waste. The size and distribution of the e-waste with …

Enabling Technologies For Chemical Synthesis: I. Selective Microwave Heating; Ii. Synthesis And Regioselective Cyclotrimerizations Of Tethered 1,6-Diynes, Amir Tavakoli

Graduate Theses, Dissertations, and Problem Reports

Reaction discoveries, method developments, and technology advancements lie at the heart of synthetic organic chemistry. These innovations are essential for creating and manipulating complex molecules, which are the building blocks of many important chemical compounds, including pharmaceuticals, materials, and agrochemicals. Here, we first describe new methods to prepare neopentylene-tethered (NPT) 1,6-diynes which are valuable substrates for reaction discovery and target-oriented synthesis, especially in benzannulation strategies toward illudalane natural products. NPT 1,6-diynes have been employed as coupling partners in cyclotrimerization reactions for the synthesis of highly substituted benzene rings which present a persistent challenge in chemical synthesis and are underrepresented scaffolds …

Strengthening The Interpretation Of Glass And Paint Evidence Through The Study Of Random Frequency Of Occurrence And Analytical Information, Lauryn C. Alexander

Graduate Theses, Dissertations, and Problem Reports

Glass and paint particles are frequently discovered at crime scenes as valuable trace evidence. Often, these fragments are transferred from a crime scene to a victim or person-of-interest, and can subsequently be evaluated, analyzed, and classified according to their physical and optical measurements, and chemical properties, each of which can provide important information to the analyst to assist in the determining if a recovered particle is distinguishable or indistinguishable from a known source. Moreover, these minute materials can provide information about how the events took place, leading to the reconstruction of crime scenes and the identification of valuable clues for …

Enantioselective Dearomatization Facilitated By Non-Covalent Interactions Of N-Heterocyclic Carbene Catalysts And Pyridinium Salts, Jack A. Patterson

Graduate Theses, Dissertations, and Problem Reports

Dihydropyridines are a practical organic scaffold commonly used for their pharmaceutical properties. Nucleophilic dearomatization of pyridines has proven to be a useful method in obtaining dihydropyridines. By using N-heterocyclic carbene (NHC) organocatalysts, dihydropyridines can be synthesized with high regioselectivity of the 1,4 regioisomer over the 1,2- regioisomer but often with low enantioselectivity. By incorporating non-covalent interaction contact points, we hypothesize that enantioselectivity can be enhanced. By synthesizing numerous NHCs, each proposed to exhibit a different type of non-covalent interaction (i.e., hydrogen bonding or ion pairing), an understanding of the secondary interactions within this reaction system can be studied and …

Emission Spectroscopy Of Ingaas Quantum Dots Via High-Resolution Fabry-Perot Interferometer, Raju Bhai Kc

Graduate Theses, Dissertations, and Problem Reports

Single photons emitted from self-assembled quantum dots have been widely studied to use as a promising qubit for quantum information processing. Therefore, it is critical to fully understand the emission spectra from the quantum dot's excitation if we want to use a single photon as a quantum bit. It is almost impossible to produce rotationally symmetric quantum dots due to various growth conditions and restrictions. So the real quantum dots do not have a perfectly symmetric structure. A broken rotational symmetry causes an asymmetric exchange interaction between electron and hole, leading to a fine structure splitting between two excited states. …

Feature Extraction Of Footwear Impression Images For Quality Assessment, Alexandra Hill

Graduate Theses, Dissertations, and Problem Reports

Forensic footwear impression analysis is a valuable tool in criminal investigations. Extracting useful features from images of footwear impressions is a critical step in this process. However, the quality of these images can vary widely, making feature extraction challenging. In order to give a quality assessment rating to a footwear impression image, the image should first be analyzed to extract features from the impression. In this paper, we present a method to extract features from a 2D grayscale footwear impression image. A Hierarchical Grid Model implementation has been adapted from use on a 3D dataset to assist in finding features, …

An Empirical Analysis Of Algorithms For Simple Stochastic Games, Cody William Klingler

Graduate Theses, Dissertations, and Problem Reports

This thesis presents the findings of a computational study on algorithms for Simple Stochastic Games (SSG). Simple Stochastic Games are a restriction of the Shapley stochastic model motivated by their applications in AI planning, logic synthesis, and theoretical computer science. This thesis seeks to empirically assess the performance of these algorithms to compensate for their lack of strong complexity results. Where applicable, we include both variations of algorithms where stable strategies are computed by a linear-programming and naive approach. These algorithms are evaluated on random inputs, in addition to specific difficult cases that were identified experimentally. We are interested in …

Development Of Machine Learning Based Approach To Predict Fuel Consumption And Maintenance Cost Of Heavy-Duty Vehicles Using Diesel And Alternative Fuels, Sasanka Katreddi

Graduate Theses, Dissertations, and Problem Reports

One of the major contributors of human-made greenhouse gases (GHG) namely carbon dioxide (CO2), methane (CH4), and nitrous oxide (NOX) in the transportation sector and heavy-duty vehicles (HDV) contributing to about 27% of the overall fraction. In addition to the rapid increase in global temperature, airborne pollutants from diesel vehicles also present a risk to human health. Even a small improvement that could potentially drive energy savings to the century-old mature diesel technology could yield a significant impact on minimizing greenhouse gas emissions. With the increasing focus on reducing emissions and operating costs, there is a need for efficient and …

A Study Of Accidental Daughter Crystals In Fluid Inclusions In Bedded Halite From The Permian Opeche Shale And Cedar Hills Sandstone Of The Midcontinental United States, Ryan James Prchlik

Graduate Theses, Dissertations, and Problem Reports

Ancient acid-saline lakes of the midcontinental United States deposited bedded halite during Permian time. These deposits are not typically preserved at the surface, but drill cores of the Opeche Shale of North Dakota and Cedar Hills Sandstone of Kansas contain preserved beds of halite. Halite from these ancient lakes have primary fluid inclusions that contain Permian lake water. Also included are accidental daughter crystals that were trapped inside the fluid inclusions at time of halite precipitation. Both the fluid and daughter crystals inside bedded halite can tell us about the geochemistry of original lake waters of Pangea.

Petrography and laser …

Multimodal Neuron Classification Based On Morphology And Electrophysiology, Aqib Ahmad

Graduate Theses, Dissertations, and Problem Reports

Categorizing neurons into different types to understand neural circuits and ultimately brain function is a major challenge in neuroscience. While electrical properties are critical in defining a neuron, its morphology is equally important. Advancements in single-cell analysis methods have allowed neuroscientists to simultaneously capture multiple data modalities from a neuron. We propose a method to classify neurons using both morphological structure and electrophysiology. Current approaches are based on a limited analysis of morphological features. We propose to use a new graph neural network to learn representations that more comprehensively account for the complexity of the shape of neuronal structures. In …

Analysis Of ‘Touch’ Dna Recovered From Metal Substrates: An Investigation Into Cfdna-Metal Interactions And The Efficacy Of Different Collection Techniques On Dna Yield, Jessica E. Thornton

Graduate Theses, Dissertations, and Problem Reports

While several improvements have been made in recent years to optimize the recovery of ‘touch’ DNA, relatively little research has been conducted to understand the relationship between ‘touch’ DNA and the binding affinity of that DNA to metal surfaces, specifically those with a significant copper presence. Furthermore, characterization of cell-free DNA (cfDNA) and its contribution to ‘touch’ samples and those cfDNA-metal interactions from objects commonly identified at crime scenes (cartridge casings, knives, doorknobs) have been lacking. Research has identified the tendency of copper ions to intercalate with DNA helices, resulting in sample degradation among other damaging conformational changes; however, while …

Sequence Checking And Deduplication For Existing Fingerprint Databases, Tahsin Islam Sakif

Graduate Theses, Dissertations, and Problem Reports

Biometric technology is a rapidly evolving field with applications that range from access to devices to border crossing and entry/exit processes. Large-scale applications to collect biometric data, such as border crossings result in multimodal biometric databases containing thousands of identities. However, due to human operator error, these databases often contain many instances of image labeling and classification; this is due to the lack of training and throughput pressure that comes with human error. Multiple entries from the same individual may be assigned to a different identity. Rolled fingerprints may be labeled as flat images, a face image entered into a …

Synthesis And Pharmacology Of Illudalic Acid And Analogous Chemical Structures, Robert Gaston Jr

Graduate Theses, Dissertations, and Problem Reports

Natural products are the foundation of modern medicine and an inspiration for chemical innovation. Developing new synthetic strategies to complex natural products drives synthetic innovation and promotes pharmacological exploration. As bioactive secondary metabolites of fungi, illudalic acid and associated analogs have unrealized medicinal potential due to synthetic limitations. Illudalic acid is notably the first selective covalent inhibitor of the LAR-PTPs, a class of enzymes linked to many human illnesses, including stimulant addiction. The chemistry herein focuses on optimizing synthetic routes to illudalic acid and associated analogs toward exploring their pharmaceutical potential. We report a second-generation synthesis of illudinine (55% overall …

Linkages Between Atmospheric Circulation, Weather, Climate, Land Cover And Social Dynamics Of The Tibetan Plateau, Shobha Kumari Yadav

Graduate Theses, Dissertations, and Problem Reports

The Tibetan Plateau (TP) is an important landmass that plays a significant role in both regional and global climates. In recent decades, the TP has undergone significant changes due to climate and human activities. Since the 1980s anthropogenic activities, such as the stocking of livestock, land cover change, permafrost degradation, urbanization, highway construction, deforestation and desertification, and unsustainable land management practices, have greatly increased over the TP. As a result, grasslands have undergone rapid degradation and have altered the land surface which in turn has altered the exchange of heat and moisture properties between land and the atmosphere. But gaps …

Exogenous Factors That Impact Huntingtin Aggregation, Adam Skeens

Graduate Theses, Dissertations, and Problem Reports

While expansion of a polyglutamine (polyQ) domain is the immediate cause of huntingtin (htt) aggregation associated with Huntington’s Disease (HD), other cellular factors modify aggregation. These include interactions with cellular membranes, protein biding partners, molecular crowding, and proteinaceous seeds. Here, two important factors are biophysically characterized: 1) the interaction of htt with endomembranes and 2) proteinaceous seeds obtained from a variety of htt-derived peptides. In the first project, the aggregation of htt at bilayer interfaces and in the presence of divalent cations was investigated. A major cellular factor implicated in altered htt aggregation is the binding of lipids. Furthermore, the …

Ambient Ammonia Synthesis Via Microwave-Catalytic Materials And Plasma Chemistry, Siobhan Brown

Graduate Theses, Dissertations, and Problem Reports

Ammonia is critical to supporting human life on earth because of its use as fertilizer. The Haber-Bosch process to produce ammonia has been practiced for over 100 years. This process operates at high pressure and temperature to overcome the thermodynamic and kinetic limitations of the ammonia synthesis reaction thus researchers have tried to overcome it for decades. At present this process represents 1% of global energy usage and 2.5% of global CO₂ emissions. The proposed chemical looping ammonia synthesis approach seeks to reduce the environmental impact of this critical process and to elucidate microwave-catalytic principles.

This research aims to …

Optimal Design And Operation Of Integrated Hydrogen Generation And Utilization Plants, Ijiwole Solomon Ijiyinka

Graduate Theses, Dissertations, and Problem Reports

There are considerable efforts worldwide for reducing the use of fossil fuel for energy production. While renewable energy sources are being increasingly used, fossil fuel still contribute about 80% of the energy used worldwide. As a result, the level of CO₂ is still increasing fast in the atmosphere currently exceeding about 410 parts per million (ppm). For reducing CO₂ build up in the atmosphere, various approaches are being investigated. For the electric power generation sector, two key approaches are post-combustion CO₂ capture and use of hydrogen as a fuel for power generation. These two solutions can also …

On Eulerian Subgraphs And Hamiltonian Line Graphs, Yikang Xie

Graduate Theses, Dissertations, and Problem Reports

A graph {\color{black}$G$} is Hamilton-connected if for any pair of distinct vertices {\color{black}$u, v \in V(G)$}, {\color{black}$G$} has a spanning $(u,v)$-path; {\color{black}$G$} is 1-hamiltonian if for any vertex subset $S \subseteq {\color{black}V(G)}$ with $|S| \le 1$, $G - S$ has a spanning cycle. Let $\delta(G)$, $\alpha'(G)$ and $L(G)$ denote the minimum degree, the matching number and the line graph of a graph $G$, respectively. The following result is obtained. {\color{black} Let $G$ be a simple graph} with $|E(G)| \ge 3$. If $\delta(G) \geq \alpha'(G)$, then each of the following holds. \\ (i) $L(G)$ is Hamilton-connected if and only if $\kappa(L(G))\ge …

Continental Saline Environments Interpreted From Bedded Gypsum Of The Triassic Red Peak Formation (Chugwater Group), Northcentral Wyoming, Maya Yamei Bradford

Graduate Theses, Dissertations, and Problem Reports

Bedded evaporites and associated red bed siliciclastics record saline lake and groundwater systems from Permo-Triassic Pangea. A major component of these red bed and evaporite systems is bedded gypsum. However, little attention has been paid to the textures of ancient gypsum. Observations of gypsum textures can refine interpretations of depositional environment and diagenetic history. This project describes textures of bedded gypsum from an outcrop of the Triassic Red Peak Formation (Chugwater Group) near Greybull, Wyoming.

This thesis uses fieldwork, petrography, and x-ray diffraction to describe an outcrop of the upper Red Peak Formation, with a focus on textures of bedded …

Copper-Catalyzed Dehydrogenative Decarboxylation Reactions Of Carboxylic Acids To Alkenes, Michael P. Stanton

Graduate Theses, Dissertations, and Problem Reports

Linear alpha olefins (LAOs) are important building blocks in the production of linear low-density polyethylene, a plastic used in products such as shrink wraps, plastic bags, tubing, plasticizers, among others. Commercial methods for generating LAOs utilize ethylene oligomerization, but this method is reliant on fossil fuels and leads to unselective product formation. Synthesis of LAOs from renewable resources, namely carboxylic acids, by decarbonylative dehydration strategies has been well studied, however, this method has inherent drawbacks rooted in the formation of internal olefin side-products through isomerization pathways. With the goal of avoiding internal isomerization, this thesis explores a dehydrogenative decarboxylation strategy …

Interpretation Of The Tandem Mass Spectrum Of The Novel Psychoactive Substance 5f-App-Pinaca, Px-2, Christopher S. Poulos

Graduate Theses, Dissertations, and Problem Reports

Designer drugs and novel psychoactive substances (NPSs) are continuously entering the black market and causing serious health problems among users. NPSs present an especially difficult challenge to forensic chemists and toxicologists because they are not well characterized and often involve families of structurally related analogs. In crime laboratories, mass spectrometry is commonly used as a part of an analytical scheme to characterize and identify unknown analytes. Towards this end, tandem mass spectra of questioned analytes are often compared to reference spectra of standards that are either collected contemporaneously with the analyte or collected previously and stored in a database. However, …

Exploration Of Metal-Carbonyl Complexes For Decarbonylation Reactions, Rebekah C. Krupa

Graduate Theses, Dissertations, and Problem Reports

In recent years, transition metal-mediated decarbonylation reactions have emerged as an alternative to conventional cross-coupling methods due to the advantages associated with the use of carbonyl-containing functionalities as coupling electrophiles instead of organohalides found in traditional cross-coupling reactions. This, coupled with the ubiquity of carbonyl-containing compounds in pharmaceuticals and non-biodegradable chemicals, has led to the interest in developing efficient systems for transition metal-catalyzed decarbonylation. However, these reactions are commonly limited to stoichiometric amounts of metal reagents due to the strong metal-carbonyl bond formed during transition metal-mediated decarbonylation. With the goal of gaining a better mechanistic understanding of CO dissociation in …

Use Of Carbonation For Treatment Of Coal Mine Drainage To Increase Limestone Dissolution And Generate Alkalinity, Dietrich Henry Kuhlmann Iv

Graduate Theses, Dissertations, and Problem Reports

Abstract

Use of Carbonation for Treatment of Coal Mine Drainage to Increase Limestone Dissolution and Generate Alkalinity

Dietrich Kuhlmann IV

Anoxic limestone drains (ALDs) are a common component used within passive treatment systems for coal mine drainage (CMD). Contact between limestone aggregate and CMD results in limestone dissolution, producing carbonate alkalinity. Though ALDs are one of the least expensive CMD treatment technologies, alkalinity generation is limited by limestone solubility. This necessitates a long retention time (>12 hours) and sometimes results in net acidic effluent which requires additional alkalinity generation steps downstream. One way to increase calcite dissolution and alkalinity …