Physical Sciences and Mathematics Commons^™

Stay Calm And Focus On The Learning Outcomes: Tools For Taking Biophysical Chemistry Online, Maria Ballester, Brian L. Van Hoozen Jr., Arthur Sikora

Chemistry and Physics Faculty Articles

Course specific learning outcomes are an important tool to define the scope of a course and can be very helpful when designing experiments and assessments. With slight modification, these learning outcomes can serve as a guide when transitioning to the distance learning format especially in courses with a traditional lab. Here we present such an example for the biophysical chemistry course.

Characterization Of Iron Ore And Scale For Synthesizing Vinyl Paint, Mohammed Tayeb Abedghars, Mokhtar Ghers, Salah Bouhouche, Belgacem Bezzina

Bulletin of the Mineral Research and Exploration

Two materials are studied to synthesize a vinyl painting. Iron ore is an iron pigment with an oolithic structure containing phosphorus. The second material is a steel by-product. The raw materials proprieties were studied by chemical, particle size, thermal, XRD and spectrophotometric analysis. The iron contents of the pigment and scale are respectively 53.18% and 73.83%. The grindability of scale is better than that of the pigment. The particle volume distribution is 0.7 to 32 µm for scale and 0.6 to 40 µm for pigment. TGA and DTA tests show that the pigment loses weight with phase dissolution by consuming …

X-Rays From Warped Black Hole Accretion Disks, Quincy Abarr

Arts & Sciences Electronic Theses and Dissertations

In this thesis, I present the results from my research to better understand accretion onto black holes and neutron stars based on spectropolarimetric X-ray observations.

I have developed a general relativistic ray-tracing code which simulates X-rays from warped accretion disks around black holes.

I used this to predict the polarization of the thermal X-ray emission and the energy spectrum the reflected power law emission.

Both of these can be used to measure properties of black hole systems, such as the spin parameter and the inclination of the observer to its spin axis.

My results enable the measurement of these parameters …

Separating Signal From Noise In High-Density Diffuse Optical Tomography, Arefeh Sherafati

Arts & Sciences Electronic Theses and Dissertations

High-density diffuse optical tomography (HD-DOT) is a relatively new neuroimaging technique that detects the changes in hemoglobin concentrations following neuronal activity through the measurement of near-infrared light intensities. Thus, it has the potential to be a surrogate for functional MRI (fMRI) as a more naturalistic, portable, and cost-effective neuroimaging system. As in other neuroimaging modalities, head motion is the most common source of noise in HD-DOT data that results in spurious effects in the functional brain images. Unlike other neuroimaging modalities, data quality assessment methods are still underdeveloped for HD-DOT. Therefore, developing robust motion detection and motion removal methods in …

First Year Students' Experience In A Cyber World Course - An Evaluation, Frank Breitinger, Ryan Tully-Doyle, Kristen Przyborski, Lauren Beck, Ronald S. Harichandran

Electrical & Computer Engineering and Computer Science Faculty Publications

Although cybersecurity is a major present concern, it is not a required subject in University. In response, we developed Cyber World which introduces students to eight highly important cybersecurity topics (primarily taught by none cybersecurity experts). We embedded it into our critical thinking Common Course (core curriculum) which is a team-taught first-year experience required for all students. Cyber World was first taught in Fall 2018 to a cohort of over 150 students from various majors at the University of New Haven. This article presents the evaluation of our Fall taught course. In detail, we compare the performance of Cyber World …

Biomedical Applications Of Polarimetry, Nathaniel Owen King

McKelvey School of Engineering Theses & Dissertations

Non- or minimally-invasive data collection is highly desirable for gathering the broad base of information that facilitates moving technology to the point of care. Polarimetry has been making this transition for years. Early forms of polarization-sensitive optics involved custom multiplexing a series of images to generate a single image, but today’s snapshot polarimeters are readily commercially available.

The research presented in this dissertation advances three areas of polarimetric imaging: First, this research develops a reflectance-based measurement for tracking changes in the alignment of dynamically loaded soft tissue, specifically tendon. This work highlights a range of mounting angles across which signal …

Structural Organization And Chemical Activity Revealed By New Developments In Single-Molecule Fluorescence And Orientation Imaging, Tianben Ding

McKelvey School of Engineering Theses & Dissertations

Single-molecule (SM) fluorescence and its localization are important and versatile tools for understanding and quantifying dynamical nanoscale behavior of nanoparticles and biological systems. By actively controlling the concentration of fluorescent molecules and precisely localizing individual single molecules, it is possible to overcome the classical diffraction limit and achieve 'super-resolution' with image resolution on the order of 10 nanometers.

Single molecules also can be considered as nanoscale sensors since their fluorescence changes in response to their local nanoenvironment. This dissertation discusses extending this SM approach to resolve heterogeneity and dynamics of nanoscale materials and biophysical structures by using positions and orientations …

New Physics With Ultra-High Energy Neutrinos, Yicong Sui

Arts & Sciences Electronic Theses and Dissertations

Ultra-high energy (UHE) astrophysical neutrinos are unique in the sense that they are the

only known particles that could travel through incredibly long distance unattenuated, with

TeV to EeV energy, much higher than the most powerful man-made collider could provide.

The detection of these UHE neutrinos has ushered a new era in neutrino astrophysics, as they

carry important information directly from the inside of energetic astrophysical objects. On the

other hand, from the particle physics point of view, the UHE neutrinos also offer a new window

of opportunity for studying beyond the Standard Model (BSM) phenomena. This is the main …

Growth Of Small Particles In Nonequilibrium Plasmas, Necip Berker Üner

McKelvey School of Engineering Theses & Dissertations

Nonequilibrium plasma (NEP) is an extraordinary environment for material synthesis. NEP is comprised of hot electrons with temperatures greater than 10000 K and of cold ions and neutrals that are usually at few hundred kelvins above room temperature. Due to this large difference in species’ temperatures, the assumption of local thermal equilibrium does not hold in NEP. Therefore, NEP can act as a unique processor of mass, and it can transform materials along pathways that are not accessible by methods wherein local thermal equilibrium is valid. For decades, NEPs have been employed in the semiconductor industry to manufacture many thin …

Gw190412: Observation Of A Binary-Black-Hole Coalescence With Asymmetric Masses, R. Abbott, T. D. Abbott, S. Abraham, F. Acernese, K. Ackley, C. Adams, R. X. Adhikari, V. B. Adya, C. Affeldt, M. Agathos, K. Agatsuma, N. Aggarwal, O. D. Aguiar, A. Aich, L. Aiello, A. Ain, P. Ajith, S. Akcay, G. Allen, A. Allocca, P. A. Altin, A. Amato, S. Anand, A. Ananyeva, S. B. Anderson, W. G. Anderson, S. V. Angelova, S. Ansoldi, S. Antier, S. Appert, K. Arai, Tiffany Z. Summerscales

Faculty Publications

© 2020 authors. Published by the American Physical Society. Published by the American Physical Society under the terms of the "https://creativecommons.org/licenses/by/4.0/"Creative Commons Attribution 4.0 International license. Further distribution of this work must maintain attribution to the author(s) and the published article's title, journal citation, and DOI. We report the observation of gravitational waves from a binary-black-hole coalescence during the first two weeks of LIGO's and Virgo's third observing run. The signal was recorded on April 12, 2019 at 05â¶30â¶44 UTC with a network signal-to-noise ratio of 19. The binary is different from observations during the first two observing runs most …

Convex Relaxations For Particle-Gradient Flow With Applications In Super-Resolution Single-Molecule Localization Microscopy, Hesam Mazidisharfabadi

McKelvey School of Engineering Theses & Dissertations

Single-molecule localization microscopy (SMLM) techniques have become advanced bioanalytical tools by quantifying the positions and orientations of molecules in space and time at the nanoscale. With the noisy and heterogeneous nature of SMLM datasets in mind, we discuss leveraging particle-gradient flow 1) for quantifying the accuracy of localization algorithms with and without ground truth and 2) as a basis for novel, model-driven localization algorithms with empirically robust performance. Using experimental data, we demonstrate that overlapping images of molecules, a typical consequence of densely packed biological structures, cause biases in position estimates and reconstruction artifacts. To minimize such biases, we develop …

Cosmological Initial Data For Numerical Relativity, David Garfinkle, Lawrence Mead

Faculty Publications

© 2020 American Physical Society. We find initial data for numerical relativity simulations of inhomogeneous cosmologies. This involves treating an exceptional case of the general relativity constraint equations. We devise analytic and numerical methods to treat this exceptional case. We apply the analytic method to the standard case of cosmology with a single scalar field. The numerical method is applied to the two-field ekpyrotic cosmology.

Domain Specific Computing In Tightly-Coupled Heterogeneous Systems, Anthony Michael Cabrera

McKelvey School of Engineering Theses & Dissertations

Over the past several decades, researchers and programmers across many disciplines have relied on Moores law and Dennard scaling for increases in compute capability in modern processors. However, recent data suggest that the number of transistors per square inch on integrated circuits is losing pace with Moores laws projection due to the breakdown of Dennard scaling at smaller semiconductor process nodes. This has signaled the beginning of a new “golden age in computer architecture” in which the paradigm will be shifted from improving traditional processor performance for general tasks to architecting hardware that executes a class of applications in a …

Peer-Led Team Learning In Calculus-Based Introductory Physics: Implementation And Evaluation, Siera Maia Stoen

Arts & Sciences Electronic Theses and Dissertations

Robust evidence shows that Peer-led Team Learning (PLTL) improves the academic success of college students in introductory Science, Technology, Engineering, and Mathematics (STEM) courses. However, further research is needed to gain a fuller understanding of the benefits of PLTL and the aim of this dissertation is to explore two key and understudied questions surrounding the effects of PLTL. First, does deviating from the optimal implementation of PLTL change its effectiveness? Second, what specific outcomes, in addition to academic success (e.g., exam scores), does PLTL improve? This dissertation will provide a fuller picture of the impact of PLTL by examining its …

Specificity Of Ssb Binding To Its Interacting Proteins And Multiple Allosteric Effects Of Ssb C-Terminal Tail On Assembly And Dna Binding Of E. Coli Recor Proteins, Min Kyung Shinn

Arts & Sciences Electronic Theses and Dissertations

The homo-tetrameric E. coli single strand (ss) DNA binding (SSB) protein is an essential component in DNA maintenance for its role in binding and protecting single stranded DNA intermediates via its N-terminal DNA binding domain (DBD). SSB also acts as a hub to recruit at least 17 SSB interacting proteins (SIPs) involved in DNA replication, recombination, and repair via its 9 amino acid C-terminal acidic tip region. A 56 amino acid intrinsically disordered linker connects the DBD and the acidic tip and plays a role in cooperative binding to ssDNA. Using isothermal titration calorimetry, I determined that the SSB-Ct peptides …

Flux Variability In Gamma-Ray Blazars, Benjamin Groebe

Arts & Sciences Electronic Theses and Dissertations

Blazars, among the most luminous objects in the sky, are extreme members of the class of active galactic nuclei featuring powerful outflows of relativistic particles in the form of jets pointed towards the observer. They display strong flux variability in all observed wavebands and on all observed timescales, with significant changes in flux observed in some sources over periods of as short as minutes. These remarkable observations have led to open questions regarding the nature of particle acceleration in the jets, location of the radiating particles along the jet, and the connection between jet emission and rate of accretion onto …

Landesque Capital And Community Organization In A Maya Economic Center: A Case Study At Salinas De Los Nueve Cerros, Guatemala, Alexander Ernesto Rivas

Arts & Sciences Electronic Theses and Dissertations

Many ancient Maya lowland cities developed water-rich landscapes that met the multiple needs of growing populations. The development of landesque capital, in which permanent changes in infrastructure, water procurement, and agricultural productivity are best understood at sites with a long history of occupation. Salinas de los Nueve Cerros was an ancient Maya center that was occupied for approximately 2000 years, surviving the ‘Maya Collapse.’ This site, located in the Maya lowlands, had ties to both highland and lowland communities through its primacy in exporting salt. However, what is not yet understood is whether the commercial population of Nueve Cerros practiced …

Development And Application Of Mass Spectrometry-Based Approaches For Protein Higher Order Structure Analysis And Protein-Protein Interaction Characterization, Mengru Zhang

Arts & Sciences Electronic Theses and Dissertations

Proteins, one of the most fundamental biomolecules, adopt unique higher order structures (HOS) to enable diverse biological functions. Deciphering protein HOS is crucial to gain deeper insights of their working mechanisms and to develop biotherapeutics. Mass spectrometry (MS)-based approaches evolved rapidly in the past 30 years and are now playing critical roles in protein HOS characterization. One of those approaches is MS-based footprinting whose principle is to map the solvent accessible surface area (SASA) to deliver structural information. Protein footprinting can be achieved by reversible labeling, e.g., hydrogen-deuterium exchange (HDX), and by irreversible labeling using radical-based reagents or other targeted …

Wavelet Coherence Analysis With An Application Of Brain Images, Yiqian Fang

Arts & Sciences Electronic Theses and Dissertations

Wavelet analysis has become an emerging method in a wide range of applications with non-stationary data. In this work, we apply wavelets to tackle the problem of estimating dynamic association in a collection of multivariate non-stationary time series. Coherence is a common metric for linear dependence across signals. However, it assumes static dependence and does not sufficiently model many biological processes with time-evolving dependence structures. We explore continuous wavelet analysis for modeling and estimating such dynamic dependence under the replicated multivariate time series settings. Wavelet transformation provides a decomposition of signals that localizes in both time and frequency domains, hence …

Production Of Medical Radioisotopes Using Titanium Accelerator Targets, Christopher Shaun Loveless

Arts & Sciences Electronic Theses and Dissertations

Theranostic radiopharmaceuticals enable diagnostic imaging and radionuclide therapy in patients using a single molecular agent labeled with a diagnostic-therapeutic pair (e.g., 68Ga/177Lu) or a theranostic radionuclide (e.g., 131I). This theranostic approach can help inform patient-specific treatment plans and improve clinical outcomes. Radionuclide pairs used in theranostic agents fall into two categories: pseudo matched-pairs (e.g., 68Ga/177Lu) and matched-pairs (e.g., 124I/131I). Pseudo matched-pair radionuclides have similar chemistries and pharmacokinetics when bound to the same bioconjugate molecule. In contrast, identical chemistries and pharmacokinetics can be obtained by using the matched-pair radionuclides.

The isotopes of Sc include two diagnostic radioisotopes, 43Sc & 44Sc, and …

Experimental Constraints On Igneous Iron Isotopic Fractionation And Diffusion, Kelsey Brianne Prissel

Arts & Sciences Electronic Theses and Dissertations

The chapters of this dissertation detail experimental studies that have been conducted in order to determine the diffusivity of iron in the mineral ilmenite (FeTiO3) and the high-temperature behavior of iron isotopes during magma crystallization. The experimental study in Chapter 2 is the first to quantify the rates of cation diffusion in ilmenite. Integrating experimentally determined Fe-Mg and Fe-Mn interdiffusivities with disequilibrium preserved in ilmenite grains from natural volcanic samples, this work has established a new geospeedometry tool with which to estimate the time between magmatic perturbation and eruption on the timescale of hours to months. Chapter 3 investigates the …

Borehole Breakout Analysis And Physical Properties Of Costa Rica Convergent Margin Sediments: Integrated Ocean Drilling Program (Iodp) Expedition 334, Gil Young Kim, Buyanbat Narantsetseg

Journal of Marine Science and Technology

Borehole image and physical properties data from two sites (U1378, U1379) drilled during the Integrated Ocean Drilling Program (IODP) Expedition 334 were analyzed to study the effect of erosional subduction at the Costa Rica convergent margin. The various laboratory and log data were collected from Logging-While-Drilling (LWD), moisture and density analysis (MAD), and Multisensor Core Logger tools (MSCL). Borehole breakouts interpreted from image data acquired from LWD were identified and analyzed using GMI Imager software. In this study, borehole breakouts from holes U1378A and U1379A showed different borehole shape and stress directions, indicating different present-day in situ stress orientation at …

Renewable-Energy Resources, Economic Growth And Their Causal Link, Yiyang Chen

Electronic Thesis and Dissertation Repository

This thesis examines the presence and strength of predictive causal relationship between re-newable energy prices and economic growth. We look for evidence by investigating the cases of Norway, New Zealand, and Canada’s two provinces of Alberta and Ontario. The usual vectorautoregressive model (VAR) and its various improved versions still assume constant parametersover time. We devise a Markov-switching VAR (MS-VAR) model in order to accommodate the observed time-dependent causal relation changes. Our proposed modelling approach is induced by the hidden Markov model methodologies in terms of an online parameter estimationthrough recursive filtering. The parameters of the MS-VAR model are governed by …

Transition Metal Complexes Of Pyridyltriazole And Bipyridine Ligands, Sen Gao

LSU Doctoral Dissertations

Four Ni(II) complexes have been obtained with the pyridyltriazole ligand, bpt, or the bis(pyridyltriazole) ligand, m-xpt, in chapter 2. This work was carried out as a comparison with the previously established coordination chemistry of copper(II) with bpt and m-xpt. Initially, the reaction between Ni(II) and bpt only produced one mononuclear compound, [Ni(bpt)₂(H₂O)₂](NO₃)₂ (1). In order to study the formation of Ni-bpt and Ni-m-xpt complexes in solution, mixtures of Ni(NO₃)₂ and ligand (m-xpt or bpt) were prepared in different ratios and …

Na Compound Fertilizer Promotes Growth And Enhances Drought Resistance Of Desert Plants, Xiangrui Zhou, Lijun Yue, Chunmei Wang, Suomin Wang

IGC Proceedings (1993-2023)

No abstract provided.

How Do Native And Improved Grasses Affect Above‐Ground Production And Soil Organic C?, Walter D. Willms, X. Hao, Guodong Han, Mengli Zhao, H. Douwes

IGC Proceedings (1993-2023)

No abstract provided.

Intensive Grazing Leads To Degradation And Spatial Homogenization Of Topsoils In Two Major Steppetypes In Inner Mongolia, P. R. China, M. Wiesmeier, M. Steffens, A. Kölbl, I. Kögel-Knabner

IGC Proceedings (1993-2023)

No abstract provided.

Review Of 3d Flow Visualization, Hange Song, Shiguang Liu

Journal of System Simulation

Abstract: 3D flow visualization describes the complex flow structure by computer graphics methods, reveals the internal laws and physical characteristics of the fluid, and has an important role in the aviation, atmosphere, and medicine and so on. There are many problems to be solved in the 3D flow visualization because of the dimension and the data scale of the 3D space. The classification of the 3D flow visualization was showed by the research status and methods, which could be divided the line-based visualization, surface-based visualization, volume rendering and texture-based visualization. The progress and problems in the above aspects were …

Fast Implementation Of Virtual Prototyping Modeling Based On Assembly Model, Wang Yu, Shouwen Yao, Jilin Liu, Dezhi Huang, Qinghua Zhang, Yi Ran

Journal of System Simulation

Abstract: A new method of virtual prototyping modeling was proposed based on assembly model, concerning the relation between assembly forms and dynamic constrains. With the transformation of assembly forms and dynamic constrains, a virtual prototyping model was built by the use of constrain models. Analysis of principle of modeling virtual prototype based on assembly was carried out, and the corresponding relationship between the assembly constraints in Pro/E and constraint block was studied and the method of modeling gear transmission was researched. With the utility of SimMechanics, a model library facing mechanism analysis under Simulink, a concept verification of a simple …

Research On Simulation Of Flexible Rope For Ship, Mincang Liang, Yin Yong

Journal of System Simulation

Abstract: In view of the problems on unreal-time, less realistic and the instability of the marine flexible rope simulation system, one kind of structure-bending spring model was proposed based on the traditional mass-spring model. Bending springs were added in the model to limit the abnormal bending phenomenon in the particle of model by setting different elasticity and damping coefficient for two kinds of spring to simulate the ropes with different rigidity. In order to guarantee the stability and accuracy of the model, improved Euler method was adopted for numerical solution. At the same time, position adjustment method and speed …