Physical Sciences and Mathematics Commons^™

Analysis Of Post-Translational Modifications (Ptm) Crosstalk, Amit Das

Theses and Dissertations

Mass spectrometry-based proteomics is a powerful tool for identifying post-translational modifications (PTMs) across the proteome. O-GlcNAcylation and phosphorylation are two PTMs that play crucial roles in regulating cellular processes, including cardiac contractile function. Dysregulation of these PTMs has been implicated in the development and progression of diabetic cardiomyopathy. In this study, we aimed to investigate the interplay between O-GlcNAcylation and phosphorylation in healthy and type 2 diabetic hearts, with a specific focus on the functional relationships between these PTMs and their potential therapeutic implications.

Utilizing mass spectrometry data, we identified and quantified specific PTMs on myofilament proteins, uncovering 1354 O-GlcNAcylated …

Microwave-Assisted Depolymerization Of Poly (Ethylene Terephthalate) Via Ethanolysis, Mayra Alejandra Gomez Cortez

Theses and Dissertations

In the search of providing an alternative form of combating the complex environmental concerns rising from the rapid growth of poly (ethylene terephthalate) waste in the world, this research focused on investigating the chemical recycling of PET via ethanolysis. Parameters such as temperature, reaction time, catalyst usage and concentration were investigated to promote depolymerization.

In this work, ethanolysis of waste PET under microwave irradiation was investigated using organocatalysts 1,5,7-Triazabicyclo [4.4.0] dec5-ene (TBD) and 1,8-Diazabicyclo [5.4.0] underc-7-ene (DBU). We evaluated the effectiveness of reaction conditions through a series of experiments and determined the optimum conditions as follows: 0.5 g of PET, …

Determination Of Effective Index Of Refraction Of Structured Materials (Photonic Crystals), Md Arafat Hossain

Theses and Dissertations

Photonic crystals have been widely studied by researchers due to their ability to control light propagation in all spatial directions. For example, 2D photonic crystals can be made of dielectric rods arranged in a square lattice. When light propagates through 2D photonic crystals, it experiences multiple scatterings by the crystal centers. The superposition of all scattered waves forms the transmitted field largely dependent upon the effective index of refraction of the structured material. We propose a method to determine the effective index of refraction through such materials with the Finite-Difference Time-Domain (FDTD) model. We set up the interface of two …

Flow Monitoring And Tidal Exchange Ratio Estimation For The Bahia Grande After Widening Of The Carl Joe Gayman Pilot Channel: Bahia Grande, Cameron County, Tx, Sabas Lopez Iii

Theses and Dissertations

The Bahia Grande (BG) is an 8,500-acre set of coastal bays and wetlands located between Brownsville and Port Isabel, Tx, near the Gulf of Mexico (GOM) coastline. In 2005, the Carl Joe Gayman Pilot Channel was constructed to address hypersalinity concerns that resulted from natural and anthropogenically-caused tidal isolation since the early 1940’s. In 2022, the Texas General Land Office (GLO) increased the channel’s width and depth in anticipation of increasing tidal exchange ratios by a factor of two to three. Once the channel widening was complete, two SL-1500-3G side-looking acoustic doppler current profilers (ADCPs) were periodically deployed beneath the …

Evaluation Of Black Holes In An Evolving Universe, John P. Naan

Theses and Dissertations

There are various solutions to the Einstein field equations that represent different physical assumptions, but how to represent multiple black holes within an expanding universe remains an area of open interest. The first step to resolving this question involves evaluating spacetime models that contain a single black hole in an expanding universe. Here, we are primarily interested in understanding the energy distribution of black hole models by solving Einstein's equations using the associated spacetime metric and comparing the propagation of waves within the model against other known spacetime models. Specifically, we will evaluate the combined Schwarschild-de Sitter solution under a …

Effects Of Missing Data Imputation Methods On Univariate Time Series Forecasting With Arima And Lstm, Nicholas Niako

Theses and Dissertations

Missing data are common in real-life studies and missing observations within the univariate time series cause analytical problems in the flow of the analysis. Imputation of missing values is an inevitable step in the analysis of every incomplete univariate time series data. The reviewed literature has shown that the focus of existing studies is on comparing the distribution of imputed data. There is a gap of knowledge on how different imputation methods for univariate time series data affect the fit and prediction performance of time series models. In this work, we evaluated the predictive performance of autoregressive integrated moving average …

Problems In Algorithmic Self-Assembly And A Genetic Approach To Patterns, Andrew Rodriguez

Theses and Dissertations

As it becomes increasingly harder to make transistors smaller, replacements for traditional silicon computers become sought after. To study the computing power of these potential computers, various theoretical models have been proposed, such as the abstract Tile Assembly Model (aTAM) and chemical reaction networks (CRNs). This thesis compiles research in various models such as the aTAM, Tile Automata, and CRNs. This work shows an investigation of covert computation in the aTAM and an evolutionary algorithm to approximate solutions to the pattern self-assembly tile set synthesis (PATS) problem. Next, optimal state complexity for building squares in Tile Automata is shown along …

The Effect Of Cybersecurity Training On Government Employee’S Knowledge Of Cybersecurity Issues And Practices, Juan Jaime Saldana Ii

Theses and Dissertations

There is an ever-pressing need for cybersecurity awareness and implementation of learning strategies in the workplace to mitigate the increased threat posed by cyber-attacks and exacerbated by an untrained workforce. The lack of cybersecurity knowledge amongst government employees has increased to critical levels due to the amount of sensitive information their agencies are responsible for. The digital compromise of a government entity often leads to a compromise of constituent data along with the disruption of public services (Axelrod, 2019; Yazdanpanahi, 2021). The need for awareness is further complicated by agencies looking to cater to a digital culture looking for a …

A Machine Learning Approach To Obese-Inflammatory Phenotyping, Tania Mayleth Vargas

Theses and Dissertations

Obesity is the accumulation of an abnormal, or excessive, amount of fat in the body, which can have negative effects on overall health. This excess accumulation of macronutrients in adipose tissue can cause the release of inflammatory mediators, leading to a proinflammatory state. Inflammation is a known risk factor for various health conditions, including cardiovascular diseases, metabolic syndrome, and diabetes. This study sought to examine the use of data mining methods, particularly clustering algorithms, to identify inflammatory biomarker phenotypes and their association with obesity in a local adolescent population. The algorithms evaluated in this study included: k-means, Ward's hierarchical …

A Generative Neural Network For Discovering Near Optimaldynamic Inductive Power Transfer Systems, Md Shain Shahid Chowdhury Oni

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

An urgent need is to electrify transportation to lower carbon emissions into the atmosphere. Wireless charging makes electrical vehicles (EVs) more convenient and cheaper because energy is transferred to the vehicle without the need to plug it in. Dynamic wireless charging is particularly interesting, where the vehicle does not need to stop to receive the energy. This technology requires the EV and the roadway to include coils of wire, where the roadway coil is energized as the vehicle passes over it to induce an electrical current in the EV coil through electromagnetic induction. However, the problem of designing the two …

Opportunities And Challenges For Cooperative Extension Becoming A Major Actor In Climate Change Mitigation And Adaptation, Dakoeta R. Pinto

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Addressing climate change in the United States is an increasingly complex issue that requires social and technological changes throughout the country, which the Cooperative Extension System (Extension) can influence. Based at land-grant universities, their goals are to bring relevant science and innovation to the people of the United States. For a successful low-carbon transition, there are certain elements of society that must be influenced by innovators like Extension. Extension’s historical roots in agriculture prevail today with most of their programming focusing on this sector. However, there is a movement within Extension to expand their programmatic efforts to address more contemporary …

The Concept Of Multicenter Bonds In Chemistry And Materials Science, Nikolay V. Tkachenko

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Chemical bonds are components of a universal and compact language of chemistry that was empirically developed before the modern concepts of quantum physics. This language explains how molecules and solids keep together. In particular, Lewis’s shared electron-pair bonding model may be considered the most successful and generally accepted theory of chemical bonding due to its simplicity and predictive power. However, there is an entire world of chemical species where the classical Lewis bonding language fails to describe the bonding pattern adequately. Those cases include but are not limited to compounds with a significant electron delocalization (where electron density spread on …

Regeneration Of Quaking Aspen And Understory Vegetation Change After Fire Risk Reduction Treatment, Allison M. Trudgeon

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Quaking aspen (Populus tremuloides Michx.) is a keystone species that, when coexisting with conifers (i.e., seral aspen), often undergoes stand-replacing disturbances to sustain long term vigor. Historically, mixed-to-high severity fire reduced fuels and regenerated aspen, but such disturbances have become less common in recent decades. This has often led to high fuel loading, and many seral aspen stands are at now risk of an unpredictable, high-severity fire, posing a threat to development in the wildland-urban-interface. The lack of a commercial market for aspen, and the risk of conducting prescribed fire, means there are few alternate management options. This has …

Practical Improvements For Pivot And Surface Irrigation, Jonathan A. Holt

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Irrigation is critical to meeting global food and fiber demands. Optimizing agricultural irrigation may help sustain production levels, while reducing its demand for water. This research evaluated precision sprinklers and drip irrigation for pivots, five pivot track mitigation tools, three scientific irrigation scheduling (SIS) methods, sensors for surface irrigation cutoff, and automating surface systems to implement surge irrigation. With pivots and surface irrigation being the most common methods for irrigation in the West, small improvements from these tools could result in significant water savings.

Low energy precision application (LEPA) sprinklers and mobile drip irrigation (MDI) were tested on two pivots. …

A Frobenius-Schur Extension For Real Projective Representation, Levi Gagnon‐Ririe

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Many problems in physics have explicit mathematical descriptions. This thesis aims to provide the mathematical tools for a particular problem in physics, that of Quantum Mechanical symmetries. In essence, we extend the known mathematics to a more general setting and provide a wider view of Real projective representation theory. The work done in this thesis contributes to the subfield of mathematics known as representation theory and to the subfield of physics concerned with time reversal symmetry.

From Mountain Streams To Urban Rivers: An Assessment Of Microplastic Sources And Characteristics, Macy Gustavus

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Plastic products are produced and discarded at an alarming rate. Bottles, bags, toys, and clothing break down into tiny plastic pieces called microplastics, ranging in size from an eraser on the top of a pencil to smaller in size than a red blood cell. Microplastics are becoming so common in the environment that they travel in the atmosphere, rivers, and ocean currents in ways that are similar to other types of Earth Systems Cycles (i.e., the water cycle). In this study, we explored microplastic sources and sinks in a freshwater river system and how seasonal changes in discharge affect how …

Algorithms For Unit-Disk Graphs And Related Problems, Yiming Zhao

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

In this dissertation, we study algorithms for several problems on unit-disk graphs and related problems. The unit-disk graph can be viewed as an intersection graph of a set of congruent disks. Unit-disk graphs have been extensively studied due to many of their applications, e.g., modeling the topology of wireless sensor networks. Lots of problems on unit-disk graphs have been considered in the literature, such as shortest paths, clique, independent set, distance oracle, diameter, etc. Specifically, we study the following problems in this dissertation: L₁ shortest paths in unit-disk graphs, reverse shortest paths in unit-disk graphs, minimum bottleneck moving spanning …

Recreational Fishing Participation In Utah: Comparing Active And Non-Active Angler Constraint Perceptions With The Use Of License Purchase Data, Will Rempel

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

As a leisure activity, recreational fishing provides numerous social, physical, and psychological benefits to its participants. It can also provide socioeconomic opportunities to specific communities, and as an outdoor activity can create support for natural fisheries resources and public lands. License and equipment taxes are also important funding mechanisms for state wildlife managers. Though fishing participation as a percentage of the population has overall decreased in the last century, there is a recent increase in fishing participation. However, participation dynamics result in a shifting cycle of entries, departures, and re-entries to the sport. In an effort to maintain participation and …

Generative Neural Network Approach To Designing And Optimizing Dynamic Inductive Power Transfer Systems, Andrew Pond Curtis

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Electric vehicles (EVs) offer many improvements over traditional combustion engines including increasing efficiency, while decreasing cost of operation and emissions. There is a need for the development of cheap and efficient charging systems for the future success of EVs. Most EVs currently utilize static plug-in charging systems. An alternative charging method of significant interest is dynamic inductive power transfer systems (DIPT). These systems utilize two coils, one placed in the vehicle and one in the roadway to wirelessly charge the vehicle as it passes over. This method removes the current limitations on EVs where they must stop and statically charge …

Daytime Versus Nighttime Sprinkler Irrigation Of Two Urban Crops In A Semi-Arid Climate At High-Elevation, Samikshya Pyakurel

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Nighttime irrigation scheduling is a longstanding water conservation approach to reduce evaporative losses in Utah's semi-arid, urban landscapes. However, residential demand now exceeds system capacity, and the efficiency of the practice has come under question. Therefore, the objectives of this study include: 1) quantify whether a water savings exists between day and night irrigation with a water balance and energy balance approach, and 2) analyze microclimate and crop quality effects to determine any changes to evaporative demand or plant stress by irrigation timing. In 2019, we established 12 field plots in North Logan, UT (41.77° N, -111.81° W, 1380 m …

Effects Of Functional Network Model Definition On Biomarker Outcome Prediction, Xinyang Feng

Arts & Sciences Electronic Theses and Dissertations

Machine learning (ML) models are widely used to investigate the human connectome and to predict and understand behavior, emotion, and cognition. Prior research has organized pediatric connectome data using adult functional network models. However, this assumes that adult functional network models are appropriate and useful for prediction developmental outcomes from pediatric connectome data. We hypothesize that the application of adult brain network models could result in poor model fit, limiting the generalizability of results. Here, we test whether prediction of biological age is improved by concordant brain network models matching underlying functional connectome data. To quantify the difference in age …

A Study In The Freeness Of Finitely Generated Anp-Modules Upon Restriction To Principal Subalgebras, Luke Manford Flattery

Mathematics Dissertations

We are interested in quantitative information on the freeness of modules over a truncated polynomial ring when restricting to subalgebras generated by a linear form. After investigating the structure of the truncated polynomial ring, subalgebras generated by a linear form, and corresponding vector spaces, we construct a generic representation and discuss its connection to a certain affine space. We quantify the abundance of freeness of modules using a certain variety called the rank variety. For any possible dimension we construct a module whose rank variety has that dimension. Finally, we define another variety, called the module variety, and show that …

Adaptive And Topological Deep Learning With Applications To Neuroscience, Edward Mitchell

Doctoral Dissertations

Deep Learning and neuroscience have developed a two way relationship with each informing the other. Neural networks, the main tools at the heart of Deep Learning, were originally inspired by connectivity in the brain and have now proven to be critical to state-of-the-art computational neuroscience methods. This dissertation explores this relationship, first, by developing an adaptive sampling method for a neural network-based partial different equation solver and then by developing a topological deep learning framework for neural spike decoding. We demonstrate that our adaptive scheme is convergent and more accurate than DGM -- as long as the residual mirrors the …

Coefficients Of Modular Forms And Applications To Partition Theory, Michael Anthony Hanson

Doctoral Dissertations

We begin with an overview of the theory of modular forms as well as some relevant sub-topics in order to discuss three results: the first result concerns positivity of self-conjugate t-core partitions under the assumption of the Generalized Riemann Hypothesis; the second result bounds certain types of congruences called "Ramanujan congruences" for an infinite class of eta-quotients - this has an immediate application to a certain restricted partition function whose congruences have been studied in the past; the third result strengthens a previous result that relates weakly holomorphic modular forms to newforms via p-adic limits.

Dual Crosslinked Poly(Acrylamide-Co-N-Vinylpyrrolidone) Microspheres With Re-Crosslinking Ability For Fossil Energy Recovery, Jingyang Pu, Baojun Bai, Jiaming Geng, Na Zhang, Thomas P. Schuman

Geosciences and Geological and Petroleum Engineering Faculty Research & Creative Works

Microspheres have been proposed to be applied in controlling wastewater production for mature oilfields and migrating leakage for gas and nuclear waste storage. However, it remains challenging for stacked microspheres to maintain strong blocking ability in micron-sized small pores or fractures. In this study, a novel microsphere was developed with comprehensive properties including high deformability and long re-crosslinking time upon tunable swelling ratio for the applications. A dual covalent and physical crosslinking strategy was used to develop novel microspheres reinforced by a hydrogen bond (H-bond, between pyrrole ring and amide group) and coordination bond (between chromium acetate (CrAc) and carboxyl …

Open Source Intelligence For Cybersecurity Events Via Twitter Data, Dakota Dale

Graduate Theses and Dissertations

Open-Source Intelligence (OSINT) is largely regarded as a necessary component for cybersecurity intelligence gathering to secure network systems. With the advancement of artificial intelligence (AI) and increasing usage of social media, like Twitter, we have a unique opportunity to obtain and aggregate information from social media. In this study, we propose an AI-based scheme capable of automatically pulling information from Twitter, filtering out security-irrelevant tweets, performing natural language analysis to correlate the tweets about each cybersecurity event (e.g., a malware campaign), and validating the information. This scheme has many applications, such as providing a means for security operators to gain …

First-Principal Investigations Of The Electronic, Magnetic, And Thermoelectric Properties Of Crtirhal Quaternary Heusler Alloy, Shuruq Alsayegh

Graduate Theses and Dissertations

Density functional theory calculations are performed to investigate the electrical electronic, magnetic, and thermoelectric properties of CrTiRhAl quaternary Heusler alloy (QHA). The type-I atomic configuration is found to be the most stable structure of this alloy. The CrTiRhAl QHA exhibits a half-metallic ferromagnetic structure with a narrow band gap at one spin channel (semiconductor), and a metallic behavior at the other spin channel. This corresponds to a 100% spin-polarization, making it ideal for potential spintronic applications. Applying the semi-classical Boltzmann theory, the Seebeck coefficient, electrical conductivity, and electronic thermal conductivity of CrTiRhAl alloy were calculated. The predicted figure of merit …

An Experimental Study Into Tholin's Solubility With Liquid Hydrocarbons On Titan, Katherine Dzurilla

Graduate Theses and Dissertations

Titan’s production of organics in its atmosphere and the liquid hydrocarbon lakes present on its surface make it a prime target for astrobiologists. Many previous studies on laboratory analogs of these organics, called "tholins", have found amino acids, nitriles, and other building blocks necessary for life. The potential solubility of tholins in the lakes of Titan presents an opportunity to create physical and chemical changes within the organics. While the lakes of Titan are primarily comprised of nonpolar compounds (methane and ethane), many predict that very small amounts of polar hydrocarbons are also present. To better understand these processes, researchers …

An Age, Size, And Climate Response Study Of Old Growth Shortleaf Pine In The Mccurtain County Wilderness Area, Oklahoma, Nicholas Cancalosi-Dean

Graduate Theses and Dissertations

Increment cores were extracted from 483 trees distributed over 21 semi-randomly sampled 0.1-hectare plots on three distinct landscape positions in the McCurtain County Wilderness Area (MCWA), a 57 square kilometer tract of uncut shortleaf pine in southeastern Oklahoma. Forty additional cores were taken off plot from older-appearing trees. All sampled trees were shortleaf pine (Pinus echinata) with a diameter at breast height (DBH) of at least 10 cm. Hardwoods were not included in the size and age analyses. The study site chosen for the sampling was made up of four parallel east-west trending ridges near North Linson Creek, making up …

Effects Of Land Use On Soil Microbial Communities In Tropical Montane Forests Of Malaysian Borneo, Yang Kai Tang

Graduate Theses and Dissertations

Land use, such as logging and forest conversion to agriculture, can modify soil physicochemical and biological properties, and affect soil health. To understand how land use change can impact soil properties and canopy structure, we used a land use gradient in Malaysian Borneo consisting of six sites, including old growth forests, mixed forests, and agriculture fields. Specifically, we aimed to answer the following questions: (1) How do soil physicochemical properties vary across land use types? (2) Does bacterial diversity and composition vary across different land use types? (3) Does fungal diversity and composition vary across different land use types? We …