Physical Sciences and Mathematics Commons^™

Global Analysis Of The Shadow Gierer-Meinhardt System With General Linear Boundary Conditions In A Random Environment, Kwadwo Antwi-Fordjour, Seonguk Kim, Marius Nkashama

Mathematics Faculty Publications

The global analysis of the shadow Gierer-Meinhardt system with multiplicative white noise and general linear boundary conditions is investigated in this paper. For this reaction-diffusion system, we employ a fixed point argument to prove local existence and uniqueness. Our results on global existence are based on a priori estimates of solutions.

Incorporating Climate Change Predictions In Ecological Risk Assessment: A Bayesian Network Relative Risk Model For Chinook Salmon In The Skagit River Watershed, Eric J. Lawrence

Institute of Environmental Toxicology & Chemistry Publications

Climate change is expected to have widespread impacts on future ecosystem services in the Puget Sound and around the world. It is important that climate change be included in ecological risk assessment so that changing climate variables and potential interactive effects with chemical stressors can be taken into account. In this research, I focused on the question of how water temperature changes generated by climate change interact with organophosphate pesticide toxicity to affect Chinook salmon (Oncorhynchus tshawytscha) population size in the Skagit River, WA. To answer this question, I conducted an ecological risk assessment using the Bayesian network relative risk …

Prologue: An Overview To Water Topos: A 3-D Trend Surface Approach To Viewing And Teaching Aqueous Equilibrium Chemistry, Garon C. Smith, Md Mainul Hossain

Water Topos: A 3-D Trend Surface Approach to Viewing and Teaching Aqueous Equilibrium Chemistry

The “topo” approach to viewing and teaching aqueous equilibrium through 3-D trend surfaces is introduced. A list of the pedagogical resource categories that accompany each chapter is provided. We describe the “composition grids” that form the foundation for the trend surfaces. A roadmap for the subsequent chapters follows. Finally, a brief statement about the Excel-based computer software is provided.

Hive Minded: Like Neurons, Honey Bees Collectively Integrate Negative Feedback To Regulate Decisions, Talia M. Borofsky , '18, Victor J. Barranca, Rebecca Z. Zhou , '19, D. Von Trentini, R. L. Broadrup, C. Mayack

Mathematics & Statistics Faculty Works

Collective decision making is essential for multicellular and self-organized society coordination, but how this occurs when most of the individuals have limited knowledge of the external environment remains elusive. Using empirical data to inform a neuroscience-based firing-rate model, we found that integration of negative feedback and network dynamics in a honeybee, Apis mellifera, hive demonstrates strong similarities to the neuronal interactions of the human brain, where very brief perturbations of feedback in the system result in more rapid and accurate decisions. We show that honey bees used an inhibitory ‘stop’ signal towards dancing honey bees that reduced both waggle dancing …

Agent-Based Modelling Of Values: The Case Of Value Sensitive Design For Refugee Logistics, Christine Boshuijzen-Van Burken, Ross J. Gore, Frank Dignum, Lamber Royakkers, Phillip Wozny, F. Leron Shults

VMASC Publications

We have used value sensitive design as a method to develop an agent-based model of values in humanitarian logistics for refugees. Schwartz’s theory of universal values is implemented in the model in such a way that agents can make value trade-offs, which are operationalized into a measure of refugee wellbeing and a measure of public opinion about how the refugee logistics is being handled. By trying out different ‘value scenarios’, stakeholders who are responsible for, or involved in refugee logistics can have insights into the effects of various value choices. The model is visualized and made usable as a platform …

Providing Predictable Performance During Network Contingencies, Phani Krishna Penumarthi

Theses and Dissertations

In IP backbone networks, packets may get dropped due to: i) lack of viable next hops when a link/router fails, ii) forwarding loops during network convergence, and iii) buffer overflows in case of congestion. Similarly, packets may be lost in wireless networks due to variations in signal strength between a pair of mobile nodes. This dissertation explores the possibility of providing a predictable performance during such network contingencies in wired backbone networks and robotic wireless networks.

First, we study the feasibility of developing a combination of local reroute and global update mechanisms that can achieve loop-free convergence, while performing disruption-free …

Visualizing And Analyzing Structures Of Coordination Polymers Synthesized In Ionic Liquids, Natalie Husby, Akane Inoue, Hilary Eppley

Annual Student Research Poster Session

Synthesis of metal organic frameworks can result in different products based on the solvent that is used. One option is to use ionic liquids (ILs, or room temperature molten salts) to create novel metal organic coordination polymers. Our group analyzed metal organic polymers synthesized in ILs with the goal of cataloging the topology of the structures, the connectivity of the organic ligands, and the roles of the ILs in the syntheses. We used Sci-Finder Scholar to find papers where compounds were synthesized using ILs, and determined whether the IL played the role as the cation, anion, or neither in the …

An Open-Sourced, Web-Based Application To Improve Our Ability To Understand Hunter And Angler Purchasing Behavior From License Data, Nathaniel B. Price, Christopher J. Chizinski, Joseph J. Fontaine, Kevin L. Pope, Micaela Rahe, Jeff Rawlinson

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

State fish and wildlife agencies rely on hunters and anglers (i.e., sportspersons) to fund management actions through revenue generated from license sales and excise taxes on hunting and fishing equipment. There is a need to develop new techniques that bridge the information gap on participation and provide agencies with an understanding of sportspersons at a resolution that can more directly inform efforts to engage sportspersons. Monitoring sportsperson participation using information about their license-purchasing behavior has the potential to reveal important patterns in recruitment (first-time purchase of a hunting or fishing license), retention (continued purchase of licenses across multiple years), and …

A Novel Framework Using Neutrosophy For Integrated Speech And Text Sentiment Analysis, Florentin Smarandache, Kritika Mishra, Ilanthenral Kandasamy, Vasantha Kandasamy W.B.

Branch Mathematics and Statistics Faculty and Staff Publications

With increasing data on the Internet, it is becoming difficult to analyze every bit and make sure it can be used efficiently for all the businesses. One useful technique using Natural Language Processing (NLP) is sentiment analysis. Various algorithms can be used to classify textual data based on various scales ranging from just positive-negative, positive-neutral-negative to a wide spectrum of emotions. While a lot of work has been done on text, only a lesser amount of research has been done on audio datasets. An audio file contains more features that can be extracted from its amplitude and frequency than a …

Imaging Data On Characterization Of Retinal Autofluorescent Lesions In A Mouse Model Of Juvenile Neuronal Ceroid Lipofuscinosis (Cln3 Disease), Qing Jun Wang, Kyung Sik Jung, Kabhilan Mohan, Mark E. Kleinman

Ophthalmology and Visual Science Faculty Publications

Juvenile neuronal ceroid lipofuscinosis (JNCL, aka. juvenile Batten disease or CLN3 disease), a lethal pediatric neurodegenerative disease without cure, often presents with vision impairment and characteristic ophthalmoscopic features including focal areas of hyper-autofluorescence. In the associated research article “Loss of CLN3, the gene mutated in juvenile neuronal ceroid lipofuscinosis, leads to metabolic impairment and autophagy induction in retinal pigment epithelium” (Zhong et al., 2020) [1], we reported ophthalmoscopic observations of focal autofluorescent lesions or puncta in the Cln3^Δex7/8 mouse retina at as young as 8 month old. In this data article, we performed differential interference contrast and …

The Political Economy Of Nuclear Energy: Why There Is Not Broad Public Support For Nuclear Policy & Why There Should Be, Willa Grace Mei Lee

WWU Honors College Senior Projects

In this paper, I examine how the nuclear incidents at Three Mile Island, Chernobyl, and Fukushima impacted public support for nuclear energy in the United States. Particularly, I look at the ways the media has influenced public perception, and thus, nuclear policy. I also consider the economic arguments for and against using nuclear power and highlight the effects of decommissioning nuclear fleets as was seen in the aftermath of the major nuclear incidents. Lastly, I discuss how the public can become better informed on nuclear energy.

Ultimately, the three major nuclear incidents spurred anti-nuclear sentiment, which shut down nuclear plants, …

Seasonal Differences In The Optical Properties Of Chromophoric Dissolved Organic Matter At Hoag’S Pond, Wa, Kimberly Wallace

WWU Honors College Senior Projects

Dissolved organic matter (DOM) plays an important role in carbon cycling in lakes and ponds. DOM sources may vary with elevation due to vegetation differences. To examine this, optical properties of chromophoric dissolved organic matter (CDOM) were investigated between a season with heavy rainfall (wet season) and a season without much rainfall (dry season) in Hoag’s Pond, Washington, USA. This is the first study of CDOM optical properties on Hoag’s pond. Data shows that there is an increase of CDOM in Hoag’s Pond during wet season as compared to dry. Three-dimensional fluorescence excitation-emission matrices (EEM’s) showed that Hoag’s Pond contains …

Characterizing The Behavior Of Mutated Proteins With Emcap: The Energy Minimization Curve Analysis Pipeline, Matthew Lee, Bodi Van Roy, Filip Jagodzinski

WWU Honors College Senior Projects

Studies of protein mutants in wet laboratory experiments are expensive and time consuming. Computational experiments that simulate the motions of protein with amino acid substitutions can complement wet lab experiments for studying the effects of mutations. In this work we present a computational pipeline that performs exhaustive single-point amino acid substitutions in silico. We perform energy minimization as part of molecular dynamics (MD) of our generated mutant proteins, and the wild type, and log the energy potentials for each step of the simulations. We motivate several metrics that rely on the energy minimization curves of the wild type and mutant, …

A Continental Shelf Pump For Co2 On The Adélie Land Coast, East Antarctica, Mar C. Arroyo, Elizabeth H. Shadwick, Stephen R. Rintoul, Kazuya Kusahara

VIMS Articles

We quantify the transport of inorganic carbon from the continental shelf to the deep ocean in Dense Shelf Water (DSW) from the Mertz and Ninnis Polynyas along the Adélie Land coast in East Antarctica. For this purpose, observations of total dissolved inorganic carbon (TCO₂) from two summer hydrographic surveys in 2015 and 2017 were paired with DSW volume transport estimates derived from a coupled ocean‐sea ice‐ice shelf model to examine the fate of inorganic carbon in DSW from Adélie Land. Transports indicate a net outflow of 227 ± 115 Tg C yr⁻¹ with DSW in the postglacial …

Estuarine Forecasts At Daily Weather To Subseasonal Time Scales, Andrew C. Ross, Charles A. Stock, Keith W. Dixon, Marjorie A.M. Friedrichs, Et Al

VIMS Articles

Most present forecast systems for estuaries predict conditions for only a few days into the future. However, there are many reasons to expect that skillful estuarine forecasts are possible for longer time periods, including increasingly skillful extended atmospheric forecasts, the potential for lasting impacts of atmospheric forcing on estuarine conditions, and the predictability of tidal cycles. In this study, we test whether skillful estuarine forecasts are possible for up to 35 days into the future by combining an estuarine model of Chesapeake Bay with 35-day atmospheric forecasts from an operational weather model. When compared with both a hindcast simulation from …

The Infosys Times, Vol. 6, No. 1, St. Cloud State University

The Infosys TIMES

• Husky Create-a-Thon Event Winner
• Virtual Guest Speaker Presentations
• Inspirational Story of Osama Chishti
• IS Department ABET Accreditation
• DOD/NSA Grants Received
• $9,332 Research Fund

Toi-824 B: A New Planet On The Lower Edge Of The Hot Neptune Desert, J. A. Burt, L. D. Nielsen, S. N. Quinn, E. E. Mamajek, E. C. Matthews, G. Zhou, J. V. Seidel, C. X. Huang, E. Lopez, M. Soto, J. Otegi, K. G. Stassun, L. Kreidberg, K. A. Collins, J. D. Eastman, J. E. Rodriguez, A. Vanderburg, S. P. Halverson, J. K. Teske, S. X. Wang, R. P. Butler, F. Bouchy, X. Dumusque, D. Segransen, S. A. Shectman, J. D. Crane, F. Feng, B. T. Montet, A. D. Feinstein, Y. Beletski, E. Flowers, M. N. Günther, T. Daylan, K. I. Collins, D. M. Conti, T. Gan, Eric L.N. Jensen, J. F. Kielkopf, T.-G. Tan, R. Helled, C. Dorn, J. Haldemann, J. J. Lissauer, G. R. Ricker, R. Vanderspek, D. W. Latham, S. Seager, J. N. Winn, J. M. Jenkins, J. D. Twicken, J. C. Smith, P. Tenenbaum, S. Cartwright, T. Barclay, J. Pepper, G. Esquerdo, W. Fong

Physics & Astronomy Faculty Works

We report the detection of a transiting hot Neptune exoplanet orbiting TOI-824 (SCR J1448-5735), a nearby (d = 64 pc) K4V star, using data from the Transiting Exoplanet Survey Satellite. The newly discovered planet has a radius R_p = 2.93 ± 0.20 R_⊕ and an orbital period of 1.393 days. Radial velocity measurements using the Planet Finder Spectrograph and the High Accuracy Radial velocity Planet Searcher spectrograph confirm the existence of the planet, and we estimate its mass to be 18.47 ± 1.84 M_⊕. The planet's mean density is ρ_p = 4.03 (+0.98)/(-0.78) g …

Effect Of Lanthanum Doping On The Reactivity Of Unsupported Comos2 Catalysts, Carolina Valdes, Diego Gonzalez, Kenneth Flores, Thomas Eubanks, John Valle, Agnelia Tiffany Hernandez, Carlos Hernandez, Jorge Lopez, Mataz Alcoutlabi, Jason Parsons

Chemistry Faculty Publications and Presentations

In the present study, catalytic systems based on La-doping were developed to improve the activity and performance of CoMoS2 hydrodesulfurization catalysts. Lanthanum-doped at 5, 10, or 25% of the Co content in CoMoS2 hydrodesulfurization catalysts were synthesized through a solvothermal process. X-ray diffraction (XRD) and X-ray photoelectron spectroscopy (XPS) analyses confirmed the catalysts were triphasic consisting of Co9S8, MoS2, and La2S3. The La doped catalysts showed enhanced catalytic activity compared with CoMoS2 synthesized under the same conditions. The CoMoS2 prepared under solvothermal synthesis conditions showed a catalytic activity of 6.80 mol g-1 s-1, however, the La0.05Co0.95MoS2 doping showed a catalytic …

Trace Metals And The Environment: Studying The Behaviour Of Iceland’S Glacially Sourced Trace Metals, Owen Bailey

Independent Study Project (ISP) Collection

Trace metal contamination in marine ecosystems is a problem for every trophic level, from zooplankton up to humans. The mobility and uptake availability of these metals depend on such environmental parameters as salinity, temperature, and pH, among others. To explore the effects of varying parameters on dissolved metal behaviour, I studied the Jökulsárlón glacial lagoon, into which the Breidamerkurjökull glacier deposits trace metals from volcanic ash through glacial melt. In this study I develop and follow a sampling procedure to analyze trace metal concentrations in the lagoon, while additionally discussing the behaviour and impact of trace metals, focusing on cadmium, …

Iron Speciation In Pm2.5 From Urban, Agriculture, And Mixed Environments In Colorado, Usa, Joseph R. Salazar, David J. Pfotenhauer, Frank Leresche, Fernando L. Rosario-Ortiz, Michael P. Hannigan, Sirine C. Fakra, Brian Majestic

Chemistry and Biochemistry: Faculty Scholarship

Atmospheric iron solubility varies depending on whether the particles are collected in rural or urban areas, with urban areas showing increased iron solubility. In this study, we investigate if the iron species present in different environments affects its ultimate solubility. Field data are presented from the Platte River Air Pollution and Photochemistry Experiment (PRAPPE), aimed at understanding the interactions between organic carbon and trace elements in atmospheric particulate matter (PM). 24-hr PM2.5 samples were collected during the summer and winter (2016–2017), at three different sites on the Eastern Colorado plains: an urban, agricultural, and a mixed site. Downtown Denver had …

Global Patterns In Seagrass Herbivory: Why, Despite Existing Evidence, There Are Solid Arguments In Favor Of Latitudinal Gradients In Seagrass Herbivory, K. L. Heck Jr, M. Samsonova, A. G. B. Poore, Glenn A. Hyndes

Research outputs 2014 to 2021

© 2020, Coastal and Estuarine Research Federation. The ecological paradigm that biological interactions are more intense in the tropics than in temperate or polar regions has existed since the mid-twentieth century, but several recent meta-analyses have provided scant evidence for latitudinal gradients in the intensity of herbivory. This contradictory evidence led us to carefully review the data and results of several of those papers that failed to find latitudinal gradients in rates of seagrass herbivory. To re-evaluate the arguments around the presence or absence of latitudinal gradients in herbivory in seagrass, we began by expanding the selection criteria to include …

Volkilau: Volcano Rapid Response Balloon Campaign During The 2018 Kilauea Eruption, Jean Paul Vernier, Lars E. Kalnajs, Jorge Andrés Diaz, Tom Reese, Ernesto Corrales, Alfredo Alan, Hazel Vernier, Et Al

VIMS Articles

After nearly 35 years of stable activity, the Kilauea volcanic system in Hawaii went through sudden changes in May 2018 with the emergence of 20 volcanic fissures along the Lower Eastern Rift Zone (LERZ), destroying 700 homes in Leilani Estates and forcing more than 2,000 people to evacuate. Elevated volcanic emissions lasted for several months between May and September 2018, leading to low visibility and poor air quality in Hawaii and across the western Pacific. The NASA-funded VolKilau mission was rapidly mounted and conducted between 11 and 18 June 2018 to (i) profile volcanic emissions with SO2 and aerosol measurements, …

3d Face Reconstruction From Single 2d Image Using Distinctive Features, H. M. Rehan Afzal, Suhuai Luo, M. Kamran Afzal, Gopal Chaudhary, Manju Khari, Sathish Kumar

Electrical and Computer Engineering Faculty Publications

3D face reconstruction is considered to be a useful computer vision tool, though it is difficult to build. This paper proposes a 3D face reconstruction method, which is easy to implement and computationally efficient. It takes a single 2D image as input, and gives 3D reconstructed images as output. Our method primarily consists of three main steps: feature extraction, depth calculation, and creation of a 3D image from the processed image using a Basel face model (BFM). First, the features of a single 2D image are extracted using a two-step process. Before distinctive-features extraction, a face must be detected to …

A Brief Overview Of Analyzing Testing Procedures In The Quality Control Lab At Elanco Animal Health, Gina Fedrighi

Annual Student Research Poster Session

The study of testing procedures within the quality control lab was conducted at Elanco Animal Health through the summer internship program. The internship program focuses on the development of young professionals as research and manufacturing leaders in the pharmaceutical industry. The purpose of this project was to determine ways in which to save both time and money in the quality control lab through the study of various quality testing procedures. Quality Control plays a vital role in the manufacturing process in order to ensure quality of products and consistency between batches. It is important to improve upon the current testing …

Conceptualizing And Analyzing Metal-Organic Frameworks And The Role Of The Ionic Liquid, Sydney Forbes, Aaron Wills, Hilary Eppley

Annual Student Research Poster Session

The synthesis of Metal-Organic Frameworks, or MOFs, can be easily changed or manipulated simply by changing the solvent medium. The research focused primarily on the role ionic liquids (ILs) had in MOF synthesis. ILs can be defined as salts that are liquid at room temperature. IL ligands were found one of three ways in the final structure; either acting as the anion, cation, or neither and just acting as a medium for a reaction. This research primarily revolved around Cambridge Structural Database (CSD). The purpose of CSD was a way to look more closely at these crystalline structures from previous …

Bentonite Reinforced Chitosan Scaffold: Effect Of Bentonite Exfoliation On Scaffold Properties, Soma Chakraborty, Cristine Joy M. Pimentel

Chemistry Faculty Publications

Chitosan is under investigation as biodegradable scaffolding material for tissue engineering. Crosslinked chitosan alone cannot form a self-supporting scaffold hence it needs reinforcement. The group reported fabrication of chitosan scaffolds reinforced by exfoliated and non-exfoliated bentonite and compared their properties. Scaffolds were fabricated by freeze-drying technique. Bentonite was exfoliated by allowing it to swell in water for a certain time interval. XRD profile showed that swelling reduced the crystallinity of bentonite. Both types of bentonite dispersed well in the chitosan matrix and imparted structural stability to the scaffolds. Scaffolds had interconnected pores, apparent porosity of scaffold with exfoliated bentonite was …

Genome-Wide Association Study In Accessions Of The Mini-Core Collection Of Mungbean (Vigna Radiata) From The World Vegetable Gene Bank (Taiwan), Alena Sokolkova, Marina Burlyaeva, Tatjana Valiannikova, Margarita Vishnyakova, Roland Schafleitner, Cheng Ruei Lee, Chau Ti Ting, Ramakrishnan Madhavan Nair, Sergey Nuzhdin, Maria Samsonova, Eric Von Wettberg

College of Agriculture and Life Sciences Faculty Publications

Background: Mungbean (Vigna radiata (L.) R. Wilczek, or green gram) is important tropical and sub-tropical legume and a rich source of dietary protein and micronutrients. In this study we employ GWAS to examine the genetic basis of variation in several important traits in mungbean, using the mini-core collection established by the World Vegetable Center, which includes 296 accessions that represent the major market classes. This collection has been grown in a common field plot in southern European part of Russia in 2018. Results: We used 5041 SNPs in 293 accessions that passed strict filtering for genetic diversity, linkage disequilibrium, population …

A Tree Frog (Boana Pugnax) Dataset Of Skin Transcriptome For The Identification Of Biomolecules With Potential Antimicrobial Activities, Yamil Liscano Martinez, Claudia Marcela Arenas Gómez, Jeramiah J. Smith, Jean Paul Delgado

Biology Faculty Publications

Increases in the prevalence of multiply resistant microbes have necessitated the search for new molecules with antimicrobial properties. One noteworthy avenue in this search is inspired by the presence of native antimicrobial peptides in the skin of amphibians. Having the second highest diversity of frogs worldwide, Colombian anurans represent an extensive natural reservoir that could be tapped in this search. Among this diversity, species such as Boana pugnax (the Chirique-Flusse Treefrog) are particularly notable, in that they thrive in a diversity of marginal habitats, utilize both aquatic and arboreal habitats, and are members of one of few genera that are …

Iowa Waste Reduction Center Newsletter, October 2020, University Of Northern Iowa. Iowa Waste Reduction Center.

Iowa Waste Reduction Center Newsletter

Inside this Issue:

--- IWRC Begins Work on New Rural Development, USDA Grant
--- WRC Welcomes New Student Intern: Meet Elle Olthoff
--- Iowa Strategic Goals Program to Host Upcoming Webinars
--- Industry News

Interpretations Of Lava Flow Properties From Radar Remote Sensing Data, Gavin Douglas Tolometti, Catherine Neish, Gordon R. Osinski, Scott S. Hughes, Shannon E. Kobs-Nawotniak

Earth Sciences Publications

The surface morphology and roughness of a lava flow provides insight on its lava properties and emplacement processes. This is essential information for understanding the eruption history of lava fields, and magmatic processes beneath the surface of Earth and other planetary bodies such as the Moon. The surface morphology is influenced by lava properties such as viscosity, temperature, composition, and rate of shear. In this work, we seek to understand how we can interpret the emplacement processes and lava properties of lava flows using remote sensing data. Craters of the Moon (COTM) National Monument and Preserve in Idaho hosts a …